Wall clock time and date at job start Tue Mar 31 2020 15:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 H 1.09006 * 109.47078 * 55.00148 * 3 2 1 5 5 C 1.53003 * 109.47122 * 174.99529 * 3 2 1 6 6 O 1.42892 * 109.47013 * 295.00268 * 3 2 1 7 7 C 1.35898 * 117.00047 * 155.07871 * 6 3 2 8 8 C 1.38755 * 120.05803 * 5.43167 * 7 6 3 9 9 C 1.38117 * 119.94942 * 179.97438 * 8 7 6 10 10 C 1.38289 * 120.05286 * 0.25958 * 9 8 7 11 11 C 1.38245 * 120.11238 * 359.48451 * 10 9 8 12 12 S 1.76201 * 119.97271 * 180.25912 * 11 10 9 13 13 O 1.42097 * 106.40141 * 23.79697 * 12 11 10 14 14 O 1.42099 * 106.39911 * 156.71464 * 12 11 10 15 15 N 1.65598 * 107.21756 * 270.25723 * 12 11 10 16 16 C 1.46499 * 120.00200 * 64.99956 * 15 12 11 17 17 C 1.52998 * 109.47080 * 165.00271 * 16 15 12 18 18 C 1.50697 * 109.47243 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00310 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00059 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00023 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47239 * 89.99665 * 22 20 18 24 24 H 1.48491 * 109.47285 * 209.99874 * 22 20 18 25 25 H 1.48500 * 109.47068 * 329.99909 * 22 20 18 26 26 C 1.38161 * 120.05222 * 0.51464 * 11 10 9 27 27 H 1.08994 * 109.47026 * 60.00293 * 1 2 3 28 28 H 1.09003 * 109.46744 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47030 * 299.99992 * 1 2 3 30 30 H 1.08990 * 109.47259 * 240.00017 * 2 1 3 31 31 H 1.09003 * 109.46958 * 119.99983 * 2 1 3 32 32 H 1.08997 * 109.47063 * 300.00606 * 5 3 2 33 33 H 1.09006 * 109.46638 * 60.00350 * 5 3 2 34 34 H 1.09003 * 109.46933 * 179.97438 * 5 3 2 35 35 H 1.08008 * 120.02271 * 359.95684 * 8 7 6 36 36 H 1.08006 * 119.97329 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.94462 * 179.74719 * 10 9 8 38 38 H 0.97001 * 120.00024 * 245.00604 * 15 12 11 39 39 H 1.09000 * 109.47022 * 284.99799 * 16 15 12 40 40 H 1.09000 * 109.47291 * 45.00097 * 16 15 12 41 41 H 1.08999 * 109.47330 * 299.99679 * 17 16 15 42 42 H 1.09000 * 109.47200 * 59.99771 * 17 16 15 43 43 H 0.97005 * 119.99992 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.02790 * 179.77022 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1258 6 8 1.6619 2.0814 -1.2210 7 6 1.5536 3.4359 -1.2008 8 6 1.9142 4.1451 -0.0640 9 6 1.8037 5.5217 -0.0461 10 6 1.3291 6.1929 -1.1581 11 6 0.9741 5.4892 -2.2939 12 16 0.3761 6.3487 -3.7110 13 8 0.8800 7.6741 -3.6187 14 8 0.6178 5.5012 -4.8258 15 7 -1.2688 6.4620 -3.5577 16 6 -1.8504 7.2493 -2.4677 17 6 -3.3312 7.5039 -2.7562 18 6 -3.9296 8.3132 -1.6347 19 1 -3.3153 8.6153 -0.7994 20 6 -5.2614 8.6679 -1.6748 21 7 -5.7835 9.3747 -0.6962 22 14 -6.3241 8.1447 -3.1192 23 1 -6.9405 6.8254 -2.8280 24 1 -7.3924 9.1526 -3.3385 25 1 -5.4843 8.0401 -4.3394 26 6 1.0827 4.1120 -2.3167 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8531 0.9571 1.0572 33 1 3.9995 0.9054 -0.7160 34 1 3.9281 2.4721 0.1254 35 1 2.2808 3.6209 0.8063 36 1 2.0839 6.0741 0.8387 37 1 1.2395 7.2691 -1.1408 38 1 -1.8473 6.0071 -4.1896 39 1 -1.7519 6.7010 -1.5308 40 1 -1.3267 8.2019 -2.3880 41 1 -3.4298 8.0522 -3.6931 42 1 -3.8549 6.5513 -2.8359 43 1 -6.7204 9.6245 -0.7247 44 1 0.8018 3.5623 -3.2029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594773977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:53 Heat of formation + Delta-G solvation = -125.727701 kcal Electronic energy + Delta-G solvation = -25669.946356 eV Core-core repulsion = 21906.270869 eV Total energy + Delta-G solvation = -3763.675487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42948 -38.90984 -38.40467 -37.09810 -37.01294 -35.17675 -34.70317 -32.48542 -31.51428 -31.10994 -30.73104 -26.40181 -25.15397 -24.59705 -23.61457 -22.69581 -21.97842 -20.55724 -19.77917 -18.96870 -18.44407 -17.61621 -17.39090 -17.19319 -16.73046 -16.32296 -16.23767 -15.70616 -15.60299 -15.22887 -14.88384 -14.81054 -14.61755 -14.44355 -14.27381 -13.59383 -13.57199 -13.45374 -13.31276 -13.27393 -13.24551 -13.09532 -12.82638 -12.72598 -12.60207 -12.27036 -12.03400 -11.92194 -11.80011 -11.75973 -11.68205 -11.50735 -11.43325 -10.76142 -10.49934 -10.37618 -9.37899 -8.27081 -6.31908 -0.70914 -0.30966 0.25779 1.39400 1.42122 1.52803 1.93006 2.10512 2.38483 2.41795 2.71975 3.08809 3.31365 3.61453 3.73473 3.81742 3.92984 4.02974 4.06576 4.14562 4.16787 4.35594 4.38641 4.49335 4.57011 4.64588 4.66117 4.69959 4.79911 4.87843 4.90329 4.96235 5.05310 5.11761 5.13954 5.17441 5.23280 5.37980 5.38292 5.46528 5.53818 5.63289 6.06364 6.28373 6.35282 6.75898 7.32553 8.88951 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.003211 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.621303 B = 8717.123102 C = 9674.108952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C 0.068 3.932 4 H 0.083 0.917 5 C -0.179 4.179 6 O -0.319 6.319 7 C 0.106 3.894 8 C -0.152 4.152 9 C -0.096 4.096 10 C -0.074 4.074 11 C -0.640 4.640 12 S 2.713 3.287 13 O -0.982 6.982 14 O -0.982 6.982 15 N -1.109 6.109 16 C 0.136 3.864 17 C -0.018 4.018 18 C -0.532 4.532 19 H 0.043 0.957 20 C 0.008 3.992 21 N -0.948 5.948 22 Si 0.946 3.054 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.244 1.244 26 C -0.073 4.073 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.425 0.575 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.034 0.966 43 H 0.266 0.734 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.179 -19.172 2.885 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C 0.012 3.988 4 H 0.101 0.899 5 C -0.236 4.236 6 O -0.233 6.233 7 C 0.060 3.940 8 C -0.171 4.171 9 C -0.115 4.115 10 C -0.094 4.094 11 C -0.728 4.728 12 S 2.804 3.196 13 O -0.972 6.972 14 O -0.972 6.972 15 N -0.871 5.871 16 C 0.010 3.990 17 C -0.057 4.057 18 C -0.570 4.570 19 H 0.061 0.939 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.770 3.230 23 H -0.190 1.190 24 H -0.214 1.214 25 H -0.168 1.168 26 C -0.093 4.093 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.183 0.817 36 H 0.184 0.816 37 H 0.163 0.837 38 H 0.261 0.739 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.624 -18.821 2.225 26.571 hybrid contribution -1.072 -0.218 0.175 1.108 sum 17.551 -19.039 2.400 26.006 Atomic orbital electron populations 1.21791 0.95761 1.02382 1.01600 1.21672 0.96231 0.93050 1.04290 1.22894 0.96189 0.94650 0.85034 0.89913 1.22396 0.93856 1.03179 1.04185 1.86138 1.83948 1.15667 1.37570 1.19065 0.96766 0.83587 0.94616 1.21940 1.01365 0.95495 0.98255 1.21484 0.97155 0.93983 0.98852 1.21154 0.95480 1.00989 0.91758 1.30603 1.17316 1.05036 1.19863 1.01057 0.72255 0.73057 0.73226 1.93551 1.79285 1.37332 1.87073 1.93539 1.84612 1.68902 1.50187 1.55313 1.25065 1.65092 1.41625 1.21179 0.95667 0.94276 0.87879 1.19703 0.92393 0.96996 0.96640 1.21307 0.95554 1.33691 1.06483 0.93914 1.25938 0.99560 0.94596 0.98879 1.70053 1.14302 1.39898 1.34600 0.85715 0.78435 0.78336 0.80528 1.19044 1.21388 1.16768 1.20191 0.98840 0.91733 0.98543 0.93956 0.91363 0.92583 0.91008 0.87500 0.88519 0.91769 0.92201 0.81737 0.81629 0.83658 0.73880 0.91390 0.91236 0.95257 0.94771 0.92473 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.81 71.98 0.71 -1.46 16 2 C -0.12 -1.27 5.64 30.60 0.17 -1.10 16 3 C 0.07 0.91 2.22 30.60 0.07 0.98 16 4 H 0.08 0.96 6.31 -2.38 -0.02 0.95 16 5 C -0.18 -1.82 9.17 71.98 0.66 -1.16 16 6 O -0.32 -6.65 9.33 -92.41 -0.86 -7.52 16 7 C 0.11 2.43 6.60 22.51 0.15 2.58 16 8 C -0.15 -2.82 8.24 22.36 0.18 -2.64 16 9 C -0.10 -1.89 10.04 22.25 0.22 -1.66 16 10 C -0.07 -1.86 9.52 22.28 0.21 -1.65 16 11 C -0.64 -17.62 5.94 22.25 0.13 -17.49 16 12 S 2.71 83.25 5.74 -56.49 -0.32 82.92 16 13 O -0.98 -35.35 16.75 -128.00 -2.14 -37.49 16 14 O -0.98 -32.90 17.28 -128.00 -2.21 -35.11 16 15 N -1.11 -34.00 6.00 -187.49 -1.12 -35.12 16 16 C 0.14 4.97 6.16 86.38 0.53 5.51 16 17 C -0.02 -0.80 4.18 29.85 0.12 -0.68 16 18 C -0.53 -29.26 9.66 25.60 0.25 -29.01 16 19 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 20 C 0.01 0.43 5.47 84.65 0.46 0.89 16 21 N -0.95 -58.01 13.96 21.45 0.30 -57.71 16 22 Si 0.95 42.77 27.47 68.60 1.88 44.65 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 26 C -0.07 -1.93 9.46 22.36 0.21 -1.72 16 27 H 0.04 0.76 7.82 -2.39 -0.02 0.74 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.06 0.67 6.91 -2.39 -0.02 0.65 16 35 H 0.17 1.98 5.43 -2.91 -0.02 1.96 16 36 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.15 3.53 7.62 -2.91 -0.02 3.50 16 38 H 0.42 11.38 8.65 -96.75 -0.84 10.54 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.63 7.75 -2.39 -0.02 2.61 16 41 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 42 H 0.03 1.40 7.57 -2.39 -0.02 1.39 16 43 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 44 H 0.15 3.71 7.62 -2.91 -0.02 3.68 16 Total: -1.00 -73.30 373.64 -0.29 -73.59 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.11 Total: 20.41 kcal Atomic # 6 Polarization: -52.70 SS G_CDS: 4.09 Total: -48.62 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -0.83 Total: -92.84 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: -5.22 Total: -80.12 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Atomic # 16 Polarization: 83.25 SS G_CDS: -0.32 Total: 82.92 kcal Total: -73.30 -0.29 -73.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594773977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.137 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds