Wall clock time and date at job start Tue Mar 31 2020 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47579 * 2 1 4 4 C 1.53002 * 109.47268 * 239.99443 * 2 1 3 5 5 C 1.52996 * 109.47260 * 295.00625 * 4 2 1 6 6 H 1.09000 * 109.47181 * 54.99173 * 5 4 2 7 7 C 1.52996 * 109.47105 * 174.99956 * 5 4 2 8 8 O 1.42896 * 109.47528 * 54.99592 * 7 5 4 9 9 N 1.46506 * 109.46808 * 294.99374 * 5 4 2 10 10 S 1.65596 * 119.99882 * 144.99816 * 9 5 4 11 11 O 1.42098 * 106.40347 * 178.54005 * 10 9 5 12 12 O 1.42098 * 106.40420 * 311.46729 * 10 9 5 13 13 C 1.76205 * 107.21729 * 65.00307 * 10 9 5 14 14 C 1.38660 * 119.87244 * 269.72680 * 13 10 9 15 15 C 1.38622 * 120.49698 * 179.71860 * 14 13 10 16 16 C 1.37634 * 120.24753 * 0.55614 * 15 14 13 17 17 C 1.40698 * 119.74658 * 359.72242 * 16 15 14 18 18 C 1.41400 * 120.24667 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00125 * 155.25433 * 18 17 16 20 20 C 1.39944 * 119.99589 * 335.24809 * 18 17 16 21 21 N 1.30815 * 120.00309 * 342.25295 * 20 18 17 22 22 Si 1.86809 * 119.99678 * 162.25244 * 20 18 17 23 23 H 1.48500 * 109.46825 * 59.99804 * 22 20 18 24 24 H 1.48499 * 109.46992 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46968 * 300.00106 * 22 20 18 26 26 C 1.37597 * 119.87674 * 89.99687 * 13 10 9 27 27 H 1.08998 * 109.46970 * 59.99915 * 1 2 3 28 28 H 1.08998 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46848 * 300.00495 * 1 2 3 30 30 H 1.09010 * 109.47105 * 119.99673 * 2 1 3 31 31 H 1.08998 * 109.47646 * 59.99354 * 3 2 1 32 32 H 1.08998 * 109.47827 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46635 * 299.99961 * 3 2 1 34 34 H 1.08997 * 109.46550 * 55.00271 * 4 2 1 35 35 H 1.09003 * 109.47359 * 174.99687 * 4 2 1 36 36 H 1.09006 * 109.47323 * 174.99603 * 7 5 4 37 37 H 1.08998 * 109.47353 * 294.99471 * 7 5 4 38 38 H 0.96702 * 114.00207 * 179.97438 * 8 7 5 39 39 H 0.97001 * 119.99874 * 325.00687 * 9 5 4 40 40 H 1.07991 * 119.75435 * 0.02562 * 14 13 10 41 41 H 1.07997 * 119.87505 * 180.25506 * 15 14 13 42 42 H 1.08006 * 120.12865 * 179.74651 * 16 15 14 43 43 H 0.97002 * 120.00003 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.12353 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6352 -2.1955 -1.1879 6 1 0.5562 -2.2707 -1.0526 7 6 2.0353 -2.8889 -2.4917 8 8 3.4306 -2.6906 -2.7280 9 7 2.3147 -2.8421 -0.0624 10 16 1.5460 -4.0312 0.7963 11 8 2.4677 -4.4728 1.7836 12 8 0.2538 -3.5293 1.1084 13 6 1.3009 -5.3898 -0.2986 14 6 0.1373 -5.4714 -1.0483 15 6 -0.0664 -6.5315 -1.9180 16 6 0.8817 -7.5220 -2.0378 17 6 2.0637 -7.4526 -1.2777 18 6 3.0450 -8.4641 -1.3928 19 1 4.0754 -8.2467 -1.1532 20 6 2.6810 -9.7470 -1.8173 21 7 1.4274 -10.1187 -1.7752 22 14 3.9852 -10.9286 -2.4439 23 1 4.9851 -11.1748 -1.3739 24 1 3.3458 -12.2122 -2.8297 25 1 4.6612 -10.3377 -3.6266 26 6 2.2624 -6.3687 -0.4023 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6054 -0.2619 -2.1369 35 1 3.1264 -0.6444 -1.2951 36 1 1.8281 -3.9563 -2.4140 37 1 1.4633 -2.4670 -3.3180 38 1 3.7548 -3.1043 -3.5397 39 1 3.2148 -2.5736 0.1797 40 1 -0.6137 -4.7007 -0.9577 41 1 -0.9746 -6.5829 -2.5001 42 1 0.7192 -8.3492 -2.7129 43 1 1.1752 -11.0081 -2.0691 44 1 3.1661 -6.3051 0.1855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594840668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:47 Heat of formation + Delta-G solvation = -130.727645 kcal Electronic energy + Delta-G solvation = -26865.917109 eV Core-core repulsion = 23102.024808 eV Total energy + Delta-G solvation = -3763.892301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.43347 -37.66164 -36.59701 -35.96404 -35.26900 -33.90997 -33.79511 -30.11121 -29.82870 -29.26783 -27.16469 -26.05574 -25.49414 -21.90160 -21.46656 -21.00108 -19.94270 -19.20139 -18.10242 -17.32374 -16.78865 -16.03226 -15.84409 -15.18756 -15.06330 -14.87060 -14.62318 -14.54120 -14.01057 -13.62386 -13.48439 -13.35346 -12.67876 -12.59881 -12.53483 -12.18754 -12.05598 -11.94414 -11.60643 -11.56819 -11.45706 -11.39648 -11.34680 -11.26714 -11.08346 -10.87593 -10.72447 -10.64544 -10.61163 -10.55017 -9.81648 -9.78276 -9.67471 -9.35966 -9.09729 -8.05465 -7.72672 -6.94748 -4.56077 1.05309 2.17678 2.61334 2.97786 2.99915 3.05455 3.57517 3.80900 4.24683 4.37756 4.42257 4.64558 4.87550 4.91468 5.02034 5.22947 5.31173 5.37410 5.44150 5.51191 5.57055 5.66022 5.73844 5.83988 5.90547 5.97214 6.00388 6.03881 6.14047 6.17620 6.27737 6.39079 6.49296 6.63897 6.73448 6.82912 7.00901 7.18369 7.30698 7.36336 7.69225 7.75424 7.77915 7.91605 8.37409 8.64304 8.69092 10.00842 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.003615 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.614910 B = 7743.320249 C = 8047.789016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.155 3.845 6 H 0.104 0.896 7 C 0.050 3.950 8 O -0.566 6.566 9 N -1.107 6.107 10 S 2.685 3.315 11 O -0.973 6.973 12 O -0.974 6.974 13 C -0.630 4.630 14 C -0.152 4.152 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.793 5.793 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.377 0.623 39 H 0.416 0.584 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.284 0.716 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 14.331 -3.698 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.120 4.120 3 C -0.203 4.203 4 C -0.149 4.149 5 C 0.048 3.952 6 H 0.122 0.878 7 C -0.030 4.030 8 O -0.371 6.371 9 N -0.865 5.865 10 S 2.780 3.220 11 O -0.964 6.964 12 O -0.964 6.964 13 C -0.722 4.722 14 C -0.174 4.174 15 C -0.140 4.140 16 C -0.140 4.140 17 C 0.089 3.911 18 C -0.490 4.490 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.736 3.264 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.142 4.142 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.223 0.777 39 H 0.250 0.750 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.095 0.905 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.194 14.483 -2.307 14.667 hybrid contribution 0.861 -1.420 -1.406 2.176 sum 0.667 13.063 -3.713 13.597 Atomic orbital electron populations 1.21954 0.95162 1.02835 1.01303 1.21154 0.96157 0.95824 0.98854 1.21831 1.00806 0.96172 1.01452 1.21788 1.02294 0.92947 0.97856 1.20943 0.96966 0.92917 0.84399 0.87846 1.22894 0.82486 1.01002 0.96598 1.86407 1.24037 1.79136 1.47540 1.55537 1.29416 1.54790 1.46747 1.01777 0.73089 0.73389 0.73722 1.93539 1.64236 1.81639 1.56955 1.93509 1.40202 1.79853 1.82874 1.29772 1.04197 1.18215 1.20001 1.20053 0.95915 1.00531 1.00861 1.20799 0.98506 0.95358 0.99303 1.21615 0.94990 0.97811 0.99583 1.17668 0.92768 0.91453 0.89181 1.19592 0.95958 0.93958 1.39495 0.89971 1.25936 0.96231 0.99192 0.92958 1.69771 1.18146 1.20186 1.33691 0.86292 0.81104 0.78690 0.80291 1.18782 1.20240 1.18712 1.20755 0.97792 0.96234 0.99442 0.92969 0.91348 0.92889 0.90896 0.92911 0.92830 0.92897 0.91039 0.90396 0.91401 0.93257 0.77683 0.75014 0.87712 0.88465 0.85861 0.90473 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.95 37.16 0.33 -1.36 16 2 C -0.10 -1.08 2.86 -90.62 -0.26 -1.34 16 3 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 4 C -0.11 -1.18 4.00 -26.73 -0.11 -1.28 16 5 C 0.16 1.99 2.57 -67.93 -0.17 1.81 16 6 H 0.10 1.34 5.70 -51.93 -0.30 1.04 16 7 C 0.05 0.63 6.88 37.16 0.26 0.89 16 8 O -0.57 -6.98 12.83 -35.23 -0.45 -7.43 16 9 N -1.11 -16.08 4.79 -4.89 -0.02 -16.10 16 10 S 2.68 50.26 5.72 -107.50 -0.61 49.65 16 11 O -0.97 -20.98 17.27 -57.17 -0.99 -21.96 16 12 O -0.97 -19.36 16.60 -57.17 -0.95 -20.30 16 13 C -0.63 -13.39 4.93 -39.66 -0.20 -13.59 16 14 C -0.15 -3.15 8.73 -39.28 -0.34 -3.49 16 15 C -0.12 -2.58 10.02 -39.66 -0.40 -2.98 16 16 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 17 C 0.09 2.34 5.57 -106.82 -0.60 1.75 16 18 C -0.46 -11.66 9.05 -37.74 -0.34 -12.00 16 19 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 20 C 0.08 1.80 5.14 -17.35 -0.09 1.71 16 21 N -0.79 -19.58 10.97 55.55 0.61 -18.97 16 22 Si 0.91 17.85 29.60 -169.99 -5.03 12.82 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 26 C -0.12 -2.86 9.26 -38.87 -0.36 -3.22 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.85 6.46 -51.93 -0.34 0.52 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.86 7.62 -51.92 -0.40 0.46 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.86 7.73 -51.93 -0.40 0.45 16 36 H 0.07 1.03 6.19 -51.93 -0.32 0.71 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.38 3.40 9.12 45.56 0.42 3.82 16 39 H 0.42 5.43 8.84 -34.47 -0.30 5.12 16 40 H 0.10 1.94 7.59 -52.49 -0.40 1.54 16 41 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.12 3.04 6.18 -52.48 -0.32 2.72 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -30.30 369.23 -9.85 -40.14 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -5.69 Total: 13.90 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: -2.27 Total: -37.30 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.59 Total: -35.07 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -2.39 Total: -49.70 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 50.26 SS G_CDS: -0.61 Total: 49.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.30 -9.85 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594840668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.585 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds