Wall clock time and date at job start Tue Mar 31 2020 14:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47579 * 2 1 4 4 C 1.53002 * 109.47268 * 239.99443 * 2 1 3 5 5 C 1.52996 * 109.47260 * 295.00625 * 4 2 1 6 6 H 1.09000 * 109.47181 * 54.99173 * 5 4 2 7 7 C 1.52996 * 109.47105 * 174.99956 * 5 4 2 8 8 O 1.42896 * 109.47528 * 54.99592 * 7 5 4 9 9 N 1.46506 * 109.46808 * 294.99374 * 5 4 2 10 10 S 1.65596 * 119.99882 * 144.99816 * 9 5 4 11 11 O 1.42098 * 106.40347 * 178.54005 * 10 9 5 12 12 O 1.42098 * 106.40420 * 311.46729 * 10 9 5 13 13 C 1.76205 * 107.21729 * 65.00307 * 10 9 5 14 14 C 1.38660 * 119.87244 * 269.72680 * 13 10 9 15 15 C 1.38622 * 120.49698 * 179.71860 * 14 13 10 16 16 C 1.37634 * 120.24753 * 0.55614 * 15 14 13 17 17 C 1.40698 * 119.74658 * 359.72242 * 16 15 14 18 18 C 1.41400 * 120.24667 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00125 * 155.25433 * 18 17 16 20 20 C 1.39944 * 119.99589 * 335.24809 * 18 17 16 21 21 N 1.30815 * 120.00309 * 342.25295 * 20 18 17 22 22 Si 1.86809 * 119.99678 * 162.25244 * 20 18 17 23 23 H 1.48500 * 109.46825 * 59.99804 * 22 20 18 24 24 H 1.48499 * 109.46992 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46968 * 300.00106 * 22 20 18 26 26 C 1.37597 * 119.87674 * 89.99687 * 13 10 9 27 27 H 1.08998 * 109.46970 * 59.99915 * 1 2 3 28 28 H 1.08998 * 109.47367 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46848 * 300.00495 * 1 2 3 30 30 H 1.09010 * 109.47105 * 119.99673 * 2 1 3 31 31 H 1.08998 * 109.47646 * 59.99354 * 3 2 1 32 32 H 1.08998 * 109.47827 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46635 * 299.99961 * 3 2 1 34 34 H 1.08997 * 109.46550 * 55.00271 * 4 2 1 35 35 H 1.09003 * 109.47359 * 174.99687 * 4 2 1 36 36 H 1.09006 * 109.47323 * 174.99603 * 7 5 4 37 37 H 1.08998 * 109.47353 * 294.99471 * 7 5 4 38 38 H 0.96702 * 114.00207 * 179.97438 * 8 7 5 39 39 H 0.97001 * 119.99874 * 325.00687 * 9 5 4 40 40 H 1.07991 * 119.75435 * 0.02562 * 14 13 10 41 41 H 1.07997 * 119.87505 * 180.25506 * 15 14 13 42 42 H 1.08006 * 120.12865 * 179.74651 * 16 15 14 43 43 H 0.97002 * 120.00003 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.12353 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6352 -2.1955 -1.1879 6 1 0.5562 -2.2707 -1.0526 7 6 2.0353 -2.8889 -2.4917 8 8 3.4306 -2.6906 -2.7280 9 7 2.3147 -2.8421 -0.0624 10 16 1.5460 -4.0312 0.7963 11 8 2.4677 -4.4728 1.7836 12 8 0.2538 -3.5293 1.1084 13 6 1.3009 -5.3898 -0.2986 14 6 0.1373 -5.4714 -1.0483 15 6 -0.0664 -6.5315 -1.9180 16 6 0.8817 -7.5220 -2.0378 17 6 2.0637 -7.4526 -1.2777 18 6 3.0450 -8.4641 -1.3928 19 1 4.0754 -8.2467 -1.1532 20 6 2.6810 -9.7470 -1.8173 21 7 1.4274 -10.1187 -1.7752 22 14 3.9852 -10.9286 -2.4439 23 1 4.9851 -11.1748 -1.3739 24 1 3.3458 -12.2122 -2.8297 25 1 4.6612 -10.3377 -3.6266 26 6 2.2624 -6.3687 -0.4023 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6054 -0.2619 -2.1369 35 1 3.1264 -0.6444 -1.2951 36 1 1.8281 -3.9563 -2.4140 37 1 1.4633 -2.4670 -3.3180 38 1 3.7548 -3.1043 -3.5397 39 1 3.2148 -2.5736 0.1797 40 1 -0.6137 -4.7007 -0.9577 41 1 -0.9746 -6.5829 -2.5001 42 1 0.7192 -8.3492 -2.7129 43 1 1.1752 -11.0081 -2.0691 44 1 3.1661 -6.3051 0.1855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594840668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:46 Heat of formation + Delta-G solvation = -152.504980 kcal Electronic energy + Delta-G solvation = -26866.861445 eV Core-core repulsion = 23102.024808 eV Total energy + Delta-G solvation = -3764.836637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.56678 -39.30134 -38.20173 -36.93774 -36.82746 -35.67408 -34.87964 -31.91557 -31.58990 -30.33042 -27.93424 -27.36709 -26.91378 -23.65097 -22.82301 -22.43227 -20.81499 -20.67277 -19.71555 -18.68831 -17.97820 -17.73190 -17.21155 -16.78515 -16.57514 -16.13864 -15.82334 -15.58141 -15.28879 -15.08800 -14.94422 -14.49447 -14.30144 -13.81056 -13.70761 -13.38231 -13.26848 -13.19286 -13.06982 -13.04839 -12.99138 -12.90223 -12.85629 -12.56461 -12.51214 -12.32693 -12.21370 -11.65446 -11.55643 -11.44185 -11.42222 -11.30404 -11.14230 -10.76013 -10.34487 -9.81611 -9.54484 -8.73357 -6.45406 -0.47835 0.41566 0.85357 1.36770 1.46063 1.49417 2.13185 2.18060 2.55188 2.80007 3.43227 3.50035 3.52026 3.71924 4.03083 4.10199 4.28826 4.31710 4.38350 4.45363 4.49082 4.59197 4.75184 4.85063 4.85546 4.90815 4.91688 4.94249 5.06613 5.09702 5.11501 5.19149 5.20530 5.32050 5.41207 5.44361 5.57513 5.58826 5.61451 5.89228 5.93920 6.11090 6.15489 6.52801 6.79910 6.85031 6.93959 8.24595 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.003615 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.614910 B = 7743.320249 C = 8047.789016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.101 4.101 5 C 0.146 3.854 6 H 0.105 0.895 7 C 0.051 3.949 8 O -0.576 6.576 9 N -1.092 6.092 10 S 2.711 3.289 11 O -1.003 7.003 12 O -0.981 6.981 13 C -0.633 4.633 14 C -0.143 4.143 15 C -0.120 4.120 16 C -0.139 4.139 17 C 0.066 3.934 18 C -0.500 4.500 19 H 0.078 0.922 20 C 0.038 3.962 21 N -0.824 5.824 22 Si 0.983 3.017 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.257 1.257 26 C -0.143 4.143 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.390 0.610 39 H 0.424 0.576 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.292 0.708 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 16.000 -4.808 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.123 4.123 3 C -0.199 4.199 4 C -0.140 4.140 5 C 0.040 3.960 6 H 0.123 0.877 7 C -0.028 4.028 8 O -0.383 6.383 9 N -0.854 5.854 10 S 2.804 3.196 11 O -0.993 6.993 12 O -0.971 6.971 13 C -0.723 4.723 14 C -0.164 4.164 15 C -0.139 4.139 16 C -0.159 4.159 17 C 0.063 3.937 18 C -0.529 4.529 19 H 0.096 0.904 20 C -0.178 4.178 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.191 1.191 25 H -0.181 1.181 26 C -0.164 4.164 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.239 0.761 39 H 0.261 0.739 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.451 16.139 -3.435 16.507 hybrid contribution 0.865 -1.768 -1.048 2.230 sum 0.414 14.371 -4.483 15.060 Atomic orbital electron populations 1.21968 0.95262 1.01874 1.02290 1.21180 0.96105 0.96880 0.98172 1.21794 1.01000 0.94926 1.02186 1.21744 1.02359 0.91152 0.98721 1.21246 0.96979 0.94273 0.83545 0.87688 1.22838 0.83145 0.99406 0.97459 1.86369 1.23891 1.79296 1.48743 1.55204 1.29856 1.53122 1.47176 1.00987 0.72666 0.72970 0.73019 1.93495 1.64977 1.82448 1.58419 1.93496 1.40959 1.79679 1.82991 1.30184 1.03652 1.18650 1.19772 1.20428 0.95941 1.00538 0.99507 1.21128 0.98861 0.94554 0.99336 1.21619 0.95642 0.98561 1.00032 1.17986 0.93557 0.92204 0.89961 1.19839 0.95993 0.95273 1.41836 0.90421 1.26741 0.98356 1.00303 0.92394 1.69811 1.19821 1.21047 1.34311 0.85233 0.78195 0.76616 0.79611 1.18716 1.19065 1.18070 1.20767 0.98528 0.97131 1.00017 0.91204 0.93193 0.92800 0.92450 0.92643 0.92526 0.91743 0.88993 0.90441 0.94219 0.90507 0.76088 0.73944 0.84954 0.85437 0.87007 0.89748 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.95 71.98 0.64 -2.41 16 2 C -0.10 -2.01 2.86 -10.79 -0.03 -2.04 16 3 C -0.14 -2.16 9.19 71.98 0.66 -1.50 16 4 C -0.10 -1.88 4.00 30.59 0.12 -1.76 16 5 C 0.15 3.46 2.57 44.99 0.12 3.57 16 6 H 0.11 2.48 5.70 -2.39 -0.01 2.47 16 7 C 0.05 1.20 6.88 71.98 0.50 1.70 16 8 O -0.58 -13.19 12.83 -148.98 -1.91 -15.10 16 9 N -1.09 -30.63 4.79 -169.39 -0.81 -31.45 16 10 S 2.71 100.42 5.72 -56.49 -0.32 100.10 16 11 O -1.00 -43.62 17.27 -128.00 -2.21 -45.83 16 12 O -0.98 -37.84 16.60 -128.00 -2.12 -39.97 16 13 C -0.63 -26.97 4.93 22.22 0.11 -26.87 16 14 C -0.14 -5.77 8.73 22.46 0.20 -5.58 16 15 C -0.12 -5.07 10.02 22.22 0.22 -4.84 16 16 C -0.14 -6.84 8.70 22.73 0.20 -6.64 16 17 C 0.07 3.46 5.57 -21.29 -0.12 3.34 16 18 C -0.50 -26.36 9.05 23.46 0.21 -26.15 16 19 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 20 C 0.04 1.83 5.14 85.26 0.44 2.27 16 21 N -0.82 -41.62 10.97 21.83 0.24 -41.38 16 22 Si 0.98 36.98 29.60 68.60 2.03 39.01 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 25 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 26 C -0.14 -7.02 9.26 22.73 0.21 -6.81 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.15 6.46 -2.39 -0.02 1.14 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.27 7.62 -2.38 -0.02 1.25 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.49 7.73 -2.39 -0.02 1.47 16 36 H 0.04 1.17 6.19 -2.38 -0.01 1.15 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.39 6.46 9.12 -74.06 -0.68 5.79 16 39 H 0.42 10.69 8.84 -96.74 -0.85 9.84 16 40 H 0.13 4.57 7.59 -2.92 -0.02 4.55 16 41 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.11 5.69 6.18 -2.91 -0.02 5.67 16 43 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 44 H 0.10 5.02 7.60 -2.91 -0.02 5.00 16 Total: -1.00 -66.04 369.23 -2.14 -68.18 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -0.50 Total: 40.14 kcal Atomic # 6 Polarization: -77.19 SS G_CDS: 3.48 Total: -73.72 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -0.57 Total: -72.82 kcal Atomic # 8 Polarization: -94.65 SS G_CDS: -6.25 Total: -100.89 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 16 Polarization: 100.42 SS G_CDS: -0.32 Total: 100.10 kcal Total: -66.04 -2.14 -68.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594840668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.327 kcal (2) G-P(sol) polarization free energy of solvation -66.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds