Wall clock time and date at job start Tue Mar 31 2020 15:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47197 * 2 1 4 4 C 1.53001 * 109.46922 * 179.97438 * 3 2 1 5 5 O 1.42910 * 109.47056 * 180.02562 * 4 3 2 6 6 C 1.42897 * 114.00003 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46918 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47292 * 65.00174 * 7 6 5 9 9 S 1.65597 * 120.00470 * 165.80729 * 8 7 6 10 10 O 1.42101 * 106.39843 * 313.34714 * 9 8 7 11 11 O 1.42101 * 106.40540 * 180.42565 * 9 8 7 12 12 C 1.76199 * 107.21685 * 66.88224 * 9 8 7 13 13 C 1.37645 * 120.12807 * 113.08359 * 12 9 8 14 14 C 1.38610 * 120.24630 * 180.32331 * 13 12 9 15 15 C 1.38654 * 120.50424 * 359.66500 * 14 13 12 16 16 C 1.37599 * 120.24897 * 0.02562 * 15 14 13 17 17 C 1.40701 * 120.13061 * 292.77391 * 12 9 8 18 18 C 1.41396 * 120.23852 * 359.97438 * 17 12 9 19 19 H 1.07998 * 120.00265 * 330.61290 * 18 17 12 20 20 C 1.39953 * 119.99498 * 150.61695 * 18 17 12 21 21 N 1.30824 * 119.99994 * 337.78191 * 20 18 17 22 22 Si 1.86797 * 119.99914 * 157.78807 * 20 18 17 23 23 H 1.48502 * 109.46958 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47272 * 299.99626 * 22 20 18 25 25 H 1.48504 * 109.47076 * 59.99763 * 22 20 18 26 26 H 1.09004 * 109.46973 * 60.00175 * 1 2 3 27 27 H 1.08999 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47222 * 300.00171 * 1 2 3 29 29 H 1.09001 * 109.47021 * 240.00344 * 2 1 3 30 30 H 1.08999 * 109.47022 * 120.00561 * 2 1 3 31 31 H 1.09001 * 109.46854 * 60.00242 * 3 2 1 32 32 H 1.08999 * 109.47592 * 300.00212 * 3 2 1 33 33 H 1.09001 * 109.46972 * 60.00543 * 4 3 2 34 34 H 1.09001 * 109.47692 * 300.00191 * 4 3 2 35 35 H 1.09003 * 109.47208 * 59.99941 * 6 5 4 36 36 H 1.09010 * 109.47013 * 299.99989 * 6 5 4 37 37 H 1.08998 * 109.47107 * 304.99876 * 7 6 5 38 38 H 1.08998 * 109.47033 * 184.99820 * 7 6 5 39 39 H 0.97003 * 120.00039 * 345.80637 * 8 7 6 40 40 H 1.08000 * 119.87532 * 0.02562 * 13 12 9 41 41 H 1.08007 * 119.74787 * 179.69025 * 14 13 12 42 42 H 1.08001 * 119.87489 * 180.02562 * 15 14 13 43 43 H 1.07995 * 120.12769 * 180.02562 * 16 15 14 44 44 H 0.97004 * 119.99698 * 354.31597 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.4709 2.9025 0.0013 7 6 5.8654 4.3808 0.0026 8 7 5.4274 5.0020 1.2550 9 16 6.0150 6.4871 1.6924 10 8 7.4215 6.4357 1.4966 11 8 5.4152 6.8042 2.9410 12 6 5.3933 7.6568 0.5305 13 6 4.4948 8.6191 0.9322 14 6 3.9991 9.5362 0.0188 15 6 4.4063 9.5004 -1.3062 16 6 5.3084 8.5513 -1.7287 17 6 5.8184 7.6149 -0.8101 18 6 6.7464 6.6354 -1.2326 19 1 7.4736 6.2445 -0.5364 20 6 6.7226 6.1724 -2.5532 21 7 5.6319 6.2859 -3.2665 22 14 8.2482 5.3923 -3.2970 23 1 7.9646 4.9879 -4.6975 24 1 9.3635 6.3726 -3.2806 25 1 8.6290 4.1958 -2.5041 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9336 0.9285 -0.8892 34 1 3.9330 0.9286 0.8908 35 1 5.8737 2.4193 -0.8889 36 1 5.8737 2.4185 0.8911 37 1 5.3896 4.8845 -0.8387 38 1 6.9482 4.4679 -0.0869 39 1 4.7932 4.5434 1.8280 40 1 4.1712 8.6566 1.9619 41 1 3.2906 10.2848 0.3416 42 1 4.0138 10.2203 -2.0092 43 1 5.6245 8.5254 -2.7610 44 1 4.8163 6.6145 -2.8567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601321130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:13 Heat of formation + Delta-G solvation = -129.871578 kcal Electronic energy + Delta-G solvation = -26661.232655 eV Core-core repulsion = 22897.377476 eV Total energy + Delta-G solvation = -3763.855179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.20640 -37.85897 -36.36794 -35.43705 -34.90146 -34.40890 -33.81599 -30.21727 -29.64644 -29.45207 -27.73724 -25.44699 -23.37825 -22.24289 -21.74278 -21.21499 -21.09764 -18.71417 -18.17732 -17.00681 -16.49905 -16.32800 -16.10297 -15.54682 -14.89235 -14.77746 -14.66529 -14.28167 -14.05884 -13.71519 -13.55303 -13.28442 -12.91321 -12.79651 -12.51273 -12.36110 -12.02500 -11.78104 -11.60514 -11.36093 -11.26662 -11.23844 -11.19232 -11.12590 -10.97803 -10.92177 -10.75652 -10.66962 -10.51838 -10.44397 -9.82695 -9.47986 -9.33261 -9.30162 -8.61287 -8.22069 -7.81151 -7.46644 -4.85965 1.53848 2.23073 2.63955 3.04666 3.13459 3.26625 3.72340 3.82001 4.01773 4.31121 4.68188 4.77355 4.87937 4.94786 5.15524 5.16608 5.27645 5.34974 5.41964 5.49154 5.54164 5.64342 5.66678 5.70869 5.73174 5.92725 5.94819 6.05851 6.11369 6.15377 6.18699 6.29163 6.44122 6.63071 6.73963 6.89574 7.14988 7.28757 7.37121 7.38847 7.56550 7.66498 7.71988 7.80327 7.96909 8.37702 8.56516 9.75543 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.004601 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.842429 B = 6084.221859 C = 6933.581701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.060 3.940 5 O -0.381 6.381 6 C 0.052 3.948 7 C 0.127 3.873 8 N -1.116 6.116 9 S 2.709 3.291 10 O -0.976 6.976 11 O -0.999 6.999 12 C -0.778 4.778 13 C 0.013 3.987 14 C -0.261 4.261 15 C -0.056 4.056 16 C -0.210 4.210 17 C 0.169 3.831 18 C -0.533 4.533 19 H 0.118 0.882 20 C 0.042 3.958 21 N -0.776 5.776 22 Si 1.056 2.944 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.268 1.268 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.409 0.591 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 -10.909 1.508 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.016 4.016 5 O -0.300 6.300 6 C -0.026 4.026 7 C 0.001 3.999 8 N -0.874 5.874 9 S 2.805 3.195 10 O -0.966 6.966 11 O -0.990 6.990 12 C -0.873 4.873 13 C -0.007 4.007 14 C -0.281 4.281 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.164 3.836 18 C -0.560 4.560 19 H 0.135 0.865 20 C -0.182 4.182 21 N -0.397 5.397 22 Si 0.879 3.121 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.192 1.192 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.241 0.759 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.988 -11.178 0.671 11.590 hybrid contribution -1.300 0.685 0.901 1.724 sum -4.288 -10.493 1.573 11.444 Atomic orbital electron populations 1.21755 0.95530 1.01507 1.02124 1.21436 0.96160 0.96278 1.02006 1.21553 0.93773 0.96920 1.03573 1.22483 0.94987 0.84441 0.99737 1.87960 1.21252 1.25485 1.95334 1.22896 0.81280 0.98085 1.00325 1.21839 1.00557 0.90534 0.86956 1.55398 1.61913 1.37527 1.32522 1.00770 0.73609 0.72543 0.72531 1.93467 1.30173 1.86438 1.86518 1.93450 1.78996 1.84238 1.42332 1.29834 1.22124 1.22132 1.13232 1.20317 0.91001 0.91731 0.97652 1.20478 1.08655 1.04770 0.94210 1.20847 0.95300 0.96305 0.95082 1.21361 1.03420 0.98297 0.99915 1.17034 0.87623 0.89832 0.89098 1.21547 1.14804 1.19505 1.00100 0.86459 1.27107 1.02687 0.94916 0.93517 1.70471 1.01813 1.27109 1.40338 0.83753 0.73835 0.77554 0.77000 1.19587 1.19403 1.19241 0.92564 0.92785 0.92603 0.91943 0.92004 0.91117 0.91002 0.93611 0.93764 0.92251 0.93176 0.88631 0.88793 0.75852 0.87245 0.88481 0.88618 0.87113 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.31 5.58 -26.73 -0.15 -1.46 16 4 C 0.06 0.72 5.94 37.16 0.22 0.94 16 5 O -0.38 -5.94 10.15 -35.23 -0.36 -6.30 16 6 C 0.05 0.78 6.13 37.16 0.23 1.01 16 7 C 0.13 2.33 4.74 -4.04 -0.02 2.31 16 8 N -1.12 -20.83 5.97 -10.62 -0.06 -20.90 16 9 S 2.71 59.37 5.44 -107.50 -0.58 58.78 16 10 O -0.98 -23.39 15.00 -57.17 -0.86 -24.25 16 11 O -1.00 -22.97 16.97 -57.17 -0.97 -23.94 16 12 C -0.78 -18.55 5.97 -38.87 -0.23 -18.78 16 13 C 0.01 0.29 9.54 -39.66 -0.38 -0.08 16 14 C -0.26 -5.68 10.05 -39.29 -0.39 -6.08 16 15 C -0.06 -1.24 10.02 -39.66 -0.40 -1.64 16 16 C -0.21 -5.04 7.89 -38.87 -0.31 -5.35 16 17 C 0.17 4.18 5.20 -106.82 -0.56 3.62 16 18 C -0.53 -12.68 4.73 -37.74 -0.18 -12.86 16 19 H 0.12 2.82 4.14 -52.49 -0.22 2.61 16 20 C 0.04 0.95 4.26 -17.34 -0.07 0.88 16 21 N -0.78 -18.20 12.41 55.55 0.69 -17.52 16 22 Si 1.06 19.60 29.99 -169.99 -5.10 14.50 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.27 -4.55 7.11 56.52 0.40 -4.15 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.10 1.99 5.84 -51.93 -0.30 1.68 16 38 H 0.09 1.75 6.28 -51.93 -0.33 1.42 16 39 H 0.41 6.75 8.51 -34.46 -0.29 6.45 16 40 H 0.11 2.32 7.32 -52.49 -0.38 1.93 16 41 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.11 2.66 6.65 -52.49 -0.35 2.31 16 44 H 0.30 7.37 6.58 -40.82 -0.27 7.10 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -28.71 364.15 -10.22 -38.92 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.43 Total: 14.72 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: -2.03 Total: -39.52 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.63 Total: -38.41 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -2.19 Total: -54.48 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.10 Total: 14.50 kcal Atomic # 16 Polarization: 59.37 SS G_CDS: -0.58 Total: 58.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.71 -10.22 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.947 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds