Wall clock time and date at job start Tue Mar 31 2020 15:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47197 * 2 1 4 4 C 1.53001 * 109.46922 * 179.97438 * 3 2 1 5 5 O 1.42910 * 109.47056 * 180.02562 * 4 3 2 6 6 C 1.42897 * 114.00003 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46918 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47292 * 65.00174 * 7 6 5 9 9 S 1.65597 * 120.00470 * 165.80729 * 8 7 6 10 10 O 1.42101 * 106.39843 * 313.34714 * 9 8 7 11 11 O 1.42101 * 106.40540 * 180.42565 * 9 8 7 12 12 C 1.76199 * 107.21685 * 66.88224 * 9 8 7 13 13 C 1.37645 * 120.12807 * 113.08359 * 12 9 8 14 14 C 1.38610 * 120.24630 * 180.32331 * 13 12 9 15 15 C 1.38654 * 120.50424 * 359.66500 * 14 13 12 16 16 C 1.37599 * 120.24897 * 0.02562 * 15 14 13 17 17 C 1.40701 * 120.13061 * 292.77391 * 12 9 8 18 18 C 1.41396 * 120.23852 * 359.97438 * 17 12 9 19 19 H 1.07998 * 120.00265 * 330.61290 * 18 17 12 20 20 C 1.39953 * 119.99498 * 150.61695 * 18 17 12 21 21 N 1.30824 * 119.99994 * 337.78191 * 20 18 17 22 22 Si 1.86797 * 119.99914 * 157.78807 * 20 18 17 23 23 H 1.48502 * 109.46958 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47272 * 299.99626 * 22 20 18 25 25 H 1.48504 * 109.47076 * 59.99763 * 22 20 18 26 26 H 1.09004 * 109.46973 * 60.00175 * 1 2 3 27 27 H 1.08999 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47222 * 300.00171 * 1 2 3 29 29 H 1.09001 * 109.47021 * 240.00344 * 2 1 3 30 30 H 1.08999 * 109.47022 * 120.00561 * 2 1 3 31 31 H 1.09001 * 109.46854 * 60.00242 * 3 2 1 32 32 H 1.08999 * 109.47592 * 300.00212 * 3 2 1 33 33 H 1.09001 * 109.46972 * 60.00543 * 4 3 2 34 34 H 1.09001 * 109.47692 * 300.00191 * 4 3 2 35 35 H 1.09003 * 109.47208 * 59.99941 * 6 5 4 36 36 H 1.09010 * 109.47013 * 299.99989 * 6 5 4 37 37 H 1.08998 * 109.47107 * 304.99876 * 7 6 5 38 38 H 1.08998 * 109.47033 * 184.99820 * 7 6 5 39 39 H 0.97003 * 120.00039 * 345.80637 * 8 7 6 40 40 H 1.08000 * 119.87532 * 0.02562 * 13 12 9 41 41 H 1.08007 * 119.74787 * 179.69025 * 14 13 12 42 42 H 1.08001 * 119.87489 * 180.02562 * 15 14 13 43 43 H 1.07995 * 120.12769 * 180.02562 * 16 15 14 44 44 H 0.97004 * 119.99698 * 354.31597 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.4709 2.9025 0.0013 7 6 5.8654 4.3808 0.0026 8 7 5.4274 5.0020 1.2550 9 16 6.0150 6.4871 1.6924 10 8 7.4215 6.4357 1.4966 11 8 5.4152 6.8042 2.9410 12 6 5.3933 7.6568 0.5305 13 6 4.4948 8.6191 0.9322 14 6 3.9991 9.5362 0.0188 15 6 4.4063 9.5004 -1.3062 16 6 5.3084 8.5513 -1.7287 17 6 5.8184 7.6149 -0.8101 18 6 6.7464 6.6354 -1.2326 19 1 7.4736 6.2445 -0.5364 20 6 6.7226 6.1724 -2.5532 21 7 5.6319 6.2859 -3.2665 22 14 8.2482 5.3923 -3.2970 23 1 7.9646 4.9879 -4.6975 24 1 9.3635 6.3726 -3.2806 25 1 8.6290 4.1958 -2.5041 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9336 0.9285 -0.8892 34 1 3.9330 0.9286 0.8908 35 1 5.8737 2.4193 -0.8889 36 1 5.8737 2.4185 0.8911 37 1 5.3896 4.8845 -0.8387 38 1 6.9482 4.4679 -0.0869 39 1 4.7932 4.5434 1.8280 40 1 4.1712 8.6566 1.9619 41 1 3.2906 10.2848 0.3416 42 1 4.0138 10.2203 -2.0092 43 1 5.6245 8.5254 -2.7610 44 1 4.8163 6.6145 -2.8567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601321130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:12 Heat of formation + Delta-G solvation = -148.052729 kcal Electronic energy + Delta-G solvation = -26662.021049 eV Core-core repulsion = 22897.377476 eV Total energy + Delta-G solvation = -3764.643573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.71318 -39.24068 -38.16113 -36.75329 -36.57624 -35.86758 -35.22001 -31.98854 -31.24949 -30.61335 -28.92714 -27.20745 -24.22165 -23.75436 -23.29274 -22.98561 -21.91718 -20.43420 -19.90834 -18.68529 -17.94406 -17.54490 -17.43982 -16.91350 -16.61338 -16.27998 -15.78669 -15.63931 -15.60263 -15.16222 -14.89751 -14.76740 -14.31721 -14.11828 -13.87635 -13.63411 -13.44732 -13.20716 -13.04732 -13.02368 -12.96026 -12.75712 -12.72146 -12.30646 -12.25415 -12.11890 -11.94874 -11.82632 -11.81427 -11.55658 -11.51725 -11.08934 -10.99283 -10.52277 -10.21421 -10.00473 -9.61977 -9.26108 -6.67552 -0.19284 0.43275 0.87410 1.53492 1.63224 1.82523 2.27682 2.32460 2.58261 2.73082 2.92170 3.36900 3.69387 3.97065 4.00062 4.17029 4.21120 4.22962 4.29724 4.32886 4.42518 4.49260 4.51488 4.62271 4.68819 4.73011 4.82193 4.90334 4.92396 4.96386 5.06889 5.11968 5.23649 5.25886 5.35289 5.36566 5.44564 5.50385 5.59620 5.76951 5.85504 6.00135 6.16819 6.26401 6.33750 6.58768 6.77796 7.94258 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009889 B = 0.004601 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.842429 B = 6084.221859 C = 6933.581701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.120 4.120 4 C 0.055 3.945 5 O -0.408 6.408 6 C 0.056 3.944 7 C 0.124 3.876 8 N -1.103 6.103 9 S 2.727 3.273 10 O -0.998 6.998 11 O -1.011 7.011 12 C -0.800 4.800 13 C -0.003 4.003 14 C -0.263 4.263 15 C -0.056 4.056 16 C -0.234 4.234 17 C 0.145 3.855 18 C -0.543 4.543 19 H 0.112 0.888 20 C 0.021 3.979 21 N -0.788 5.788 22 Si 1.089 2.911 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.240 1.240 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.420 0.580 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -12.329 1.671 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.157 4.157 4 C -0.021 4.021 5 O -0.328 6.328 6 C -0.022 4.022 7 C -0.002 4.002 8 N -0.863 5.863 9 S 2.823 3.177 10 O -0.988 6.988 11 O -1.002 7.002 12 C -0.894 4.894 13 C -0.023 4.023 14 C -0.282 4.282 15 C -0.075 4.075 16 C -0.254 4.254 17 C 0.141 3.859 18 C -0.570 4.570 19 H 0.129 0.871 20 C -0.199 4.199 21 N -0.409 5.409 22 Si 0.906 3.094 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.164 1.164 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.255 0.745 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.137 -12.592 0.850 13.004 hybrid contribution -1.349 1.168 0.888 1.993 sum -4.487 -11.423 1.739 12.395 Atomic orbital electron populations 1.21768 0.95144 1.02290 1.01816 1.21413 0.96469 0.94636 1.02838 1.21567 0.93335 0.98372 1.02448 1.22706 0.95400 0.82993 1.01045 1.87922 1.21419 1.27856 1.95606 1.22840 0.81489 0.95572 1.02251 1.21784 1.00109 0.92727 0.85556 1.55077 1.62004 1.36339 1.32915 1.00132 0.72982 0.72764 0.71840 1.93431 1.31706 1.86915 1.86733 1.93421 1.79080 1.84772 1.42912 1.30165 1.22522 1.23345 1.13374 1.20645 0.91087 0.91906 0.98680 1.20882 1.08604 1.04875 0.93889 1.21204 0.94289 0.96063 0.95951 1.21423 1.04938 0.99428 0.99586 1.17335 0.88287 0.90534 0.89776 1.21591 1.14766 1.19785 1.00808 0.87054 1.28173 1.04075 0.94292 0.93396 1.70558 1.01827 1.28220 1.40265 0.83391 0.71027 0.77998 0.77028 1.19114 1.19388 1.16365 0.93062 0.91448 0.92787 0.91283 0.90941 0.91891 0.92519 0.92605 0.92003 0.90607 0.90829 0.91329 0.89197 0.74520 0.85961 0.85336 0.85652 0.88030 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.48 16 2 C -0.12 -1.77 5.93 30.59 0.18 -1.59 16 3 C -0.12 -2.48 5.58 30.59 0.17 -2.31 16 4 C 0.05 1.21 5.94 71.98 0.43 1.64 16 5 O -0.41 -12.25 10.15 -148.98 -1.51 -13.76 16 6 C 0.06 1.59 6.13 71.98 0.44 2.03 16 7 C 0.12 4.51 4.74 86.38 0.41 4.92 16 8 N -1.10 -40.80 5.97 -187.50 -1.12 -41.92 16 9 S 2.73 119.77 5.44 -56.49 -0.31 119.46 16 10 O -1.00 -48.11 15.00 -128.00 -1.92 -50.03 16 11 O -1.01 -46.09 16.97 -128.00 -2.17 -48.27 16 12 C -0.80 -38.50 5.97 22.73 0.14 -38.37 16 13 C 0.00 -0.16 9.54 22.22 0.21 0.06 16 14 C -0.26 -11.10 10.05 22.46 0.23 -10.87 16 15 C -0.06 -2.45 10.02 22.22 0.22 -2.22 16 16 C -0.23 -11.39 7.89 22.73 0.18 -11.21 16 17 C 0.15 7.31 5.20 -21.29 -0.11 7.20 16 18 C -0.54 -26.24 4.73 23.46 0.11 -26.13 16 19 H 0.11 5.44 4.14 -2.91 -0.01 5.43 16 20 C 0.02 0.97 4.26 85.26 0.36 1.33 16 21 N -0.79 -37.55 12.41 21.83 0.27 -37.28 16 22 Si 1.09 38.61 29.99 68.60 2.06 40.67 16 23 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 24 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 25 H -0.24 -7.44 7.11 99.48 0.71 -6.73 16 26 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.07 2.90 5.84 -2.39 -0.01 2.89 16 38 H 0.09 3.32 6.28 -2.39 -0.01 3.30 16 39 H 0.42 13.53 8.51 -96.75 -0.82 12.71 16 40 H 0.12 5.09 7.32 -2.91 -0.02 5.07 16 41 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 42 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.10 5.02 6.65 -2.91 -0.02 5.00 16 44 H 0.29 14.55 6.58 -92.71 -0.61 13.94 16 Total: -1.00 -61.46 364.15 -0.67 -62.13 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: 0.35 Total: 46.01 kcal Atomic # 6 Polarization: -80.69 SS G_CDS: 3.68 Total: -77.01 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -0.85 Total: -79.20 kcal Atomic # 8 Polarization: -106.45 SS G_CDS: -5.60 Total: -112.05 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.06 Total: 40.67 kcal Atomic # 16 Polarization: 119.77 SS G_CDS: -0.31 Total: 119.46 kcal Total: -61.46 -0.67 -62.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.918 kcal (2) G-P(sol) polarization free energy of solvation -61.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds