Wall clock time and date at job start Tue Mar 31 2020 15:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.53004 * 109.47321 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.46492 * 119.99895 * 275.00156 * 5 4 3 7 7 C 1.53008 * 109.47065 * 275.69825 * 6 5 4 8 8 O 1.42900 * 109.46979 * 65.00544 * 7 6 5 9 9 S 1.65602 * 119.99613 * 95.00382 * 5 4 3 10 10 O 1.42095 * 106.39827 * 164.52037 * 9 5 4 11 11 O 1.42102 * 106.40411 * 31.60018 * 9 5 4 12 12 C 1.76202 * 107.21869 * 278.06111 * 9 5 4 13 13 C 1.37632 * 120.13156 * 112.85782 * 12 9 5 14 14 C 1.38609 * 120.25242 * 180.31843 * 13 12 9 15 15 C 1.38660 * 120.49817 * 359.68075 * 14 13 12 16 16 C 1.37594 * 120.24799 * 359.97438 * 15 14 13 17 17 C 1.40703 * 120.12338 * 292.56065 * 12 9 5 18 18 C 1.41388 * 120.24626 * 359.97357 * 17 12 9 19 19 H 1.08007 * 120.00218 * 328.62819 * 18 17 12 20 20 C 1.39946 * 120.00259 * 148.63435 * 18 17 12 21 21 N 1.30826 * 119.99496 * 339.85739 * 20 18 17 22 22 Si 1.86798 * 120.00549 * 159.86170 * 20 18 17 23 23 H 1.48498 * 109.46792 * 269.99841 * 22 20 18 24 24 H 1.48500 * 109.47165 * 29.99419 * 22 20 18 25 25 H 1.48495 * 109.47280 * 149.99647 * 22 20 18 26 26 H 1.08998 * 109.47121 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47370 * 300.00218 * 1 2 3 28 28 H 1.09006 * 109.46843 * 60.00259 * 1 2 3 29 29 H 1.09001 * 109.47334 * 240.00327 * 2 1 3 30 30 H 1.08998 * 109.47439 * 119.99887 * 2 1 3 31 31 H 1.08999 * 109.47177 * 59.99664 * 3 2 1 32 32 H 1.09002 * 109.47570 * 300.00145 * 3 2 1 33 33 H 1.09001 * 109.47041 * 60.00384 * 4 3 2 34 34 H 1.08992 * 109.46848 * 300.00171 * 4 3 2 35 35 H 1.08991 * 109.47566 * 35.70000 * 6 5 4 36 36 H 1.09005 * 109.46728 * 155.70598 * 6 5 4 37 37 H 1.08998 * 109.47192 * 185.00360 * 7 6 5 38 38 H 1.08998 * 109.46957 * 305.00141 * 7 6 5 39 39 H 0.96691 * 114.00395 * 180.02562 * 8 7 6 40 40 H 1.08009 * 119.87376 * 0.02562 * 13 12 9 41 41 H 1.07996 * 119.75373 * 179.69879 * 14 13 12 42 42 H 1.08001 * 119.87641 * 180.02562 * 15 14 13 43 43 H 1.08003 * 120.12673 * 180.02562 * 16 15 14 44 44 H 0.97004 * 120.00248 * 354.08197 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.1986 3.5505 -1.2642 7 6 5.5486 3.2120 -1.8999 8 8 5.5743 1.8279 -2.2546 9 16 4.4516 3.5636 1.4285 10 8 5.2140 4.7134 1.0882 11 8 4.9301 2.5411 2.2915 12 6 2.9517 4.1539 2.1404 13 6 2.4760 3.6002 3.3072 14 6 1.2930 4.0581 3.8659 15 6 0.5792 5.0817 3.2614 16 6 1.0396 5.6548 2.0982 17 6 2.2390 5.1973 1.5215 18 6 2.7216 5.7784 0.3263 19 1 3.7846 5.8321 0.1428 20 6 1.8220 6.2841 -0.6189 21 7 0.5749 5.8889 -0.6117 22 14 2.4017 7.5233 -1.8908 23 1 2.2287 8.8981 -1.3570 24 1 3.8361 7.2870 -2.1942 25 1 1.6014 7.3698 -3.1321 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9287 -0.8892 34 1 3.9329 0.9289 0.8908 35 1 3.3953 3.2604 -1.9412 36 1 4.1450 4.6227 -1.0748 37 1 5.6916 3.8189 -2.7939 38 1 6.3476 3.4196 -1.1882 39 1 6.4025 1.5420 -2.6637 40 1 3.0241 2.8027 3.7868 41 1 0.9246 3.6146 4.7790 42 1 -0.3412 5.4310 3.7056 43 1 0.4822 6.4522 1.6293 44 1 0.2931 5.1832 -0.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601352980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:55 Heat of formation + Delta-G solvation = -127.685069 kcal Electronic energy + Delta-G solvation = -28169.896119 eV Core-core repulsion = 24406.135753 eV Total energy + Delta-G solvation = -3763.760365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -37.92120 -37.46963 -36.48847 -35.76719 -34.93865 -34.15065 -33.68887 -30.23617 -29.71265 -29.47055 -27.18827 -25.41387 -23.21675 -21.95949 -21.79666 -21.21100 -20.62050 -18.46867 -17.90562 -17.52439 -16.63402 -16.22169 -15.75213 -15.06039 -14.89174 -14.70131 -14.28366 -13.97441 -13.87161 -13.52466 -13.35085 -13.12532 -12.75412 -12.70066 -12.43180 -12.24605 -12.01321 -11.59877 -11.52076 -11.32123 -11.25894 -11.16280 -11.03550 -11.01258 -10.88068 -10.67121 -10.62597 -10.52152 -10.42956 -10.13707 -9.83062 -9.71744 -9.38074 -9.23193 -8.39986 -8.18705 -7.81519 -7.44231 -4.88490 1.45724 2.19976 2.61768 3.04675 3.12951 3.23851 3.79485 3.83058 4.31217 4.52210 4.67643 5.06606 5.19938 5.22374 5.30220 5.39656 5.47537 5.51747 5.65360 5.69283 5.87912 5.90030 6.00062 6.03167 6.04717 6.11267 6.18722 6.25334 6.29611 6.38292 6.44346 6.50971 6.59454 6.77859 6.83406 6.87889 7.13699 7.23959 7.28196 7.41103 7.56213 7.65410 7.79961 7.80963 7.96113 8.36839 8.57293 9.78986 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008789 B = 0.007650 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.169956 B = 3659.374448 C = 4483.487073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.124 3.876 5 N -0.983 5.983 6 C 0.121 3.879 7 C 0.055 3.945 8 O -0.568 6.568 9 S 2.702 3.298 10 O -0.975 6.975 11 O -0.996 6.996 12 C -0.775 4.775 13 C 0.011 3.989 14 C -0.258 4.258 15 C -0.057 4.057 16 C -0.208 4.208 17 C 0.175 3.825 18 C -0.533 4.533 19 H 0.117 0.883 20 C 0.043 3.957 21 N -0.782 5.782 22 Si 1.058 2.942 23 H -0.271 1.271 24 H -0.267 1.267 25 H -0.273 1.273 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.369 0.631 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -6.028 -4.469 7.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.182 4.182 4 C -0.002 4.002 5 N -0.817 5.817 6 C -0.004 4.004 7 C -0.025 4.025 8 O -0.373 6.373 9 S 2.800 3.200 10 O -0.965 6.965 11 O -0.987 6.987 12 C -0.870 4.870 13 C -0.009 4.009 14 C -0.278 4.278 15 C -0.075 4.075 16 C -0.228 4.228 17 C 0.170 3.830 18 C -0.560 4.560 19 H 0.134 0.866 20 C -0.181 4.181 21 N -0.404 5.404 22 Si 0.880 3.120 23 H -0.196 1.196 24 H -0.191 1.191 25 H -0.198 1.198 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.215 0.785 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.335 -5.009 -5.166 7.565 hybrid contribution 0.001 -0.733 1.267 1.464 sum 2.337 -5.742 -3.899 7.323 Atomic orbital electron populations 1.21749 0.96096 1.00859 1.02074 1.21434 0.95743 0.97010 1.01579 1.22092 0.96296 0.96377 1.03457 1.21314 0.93176 0.82032 1.03638 1.57248 1.81863 1.21797 1.20779 1.21616 0.95174 0.98519 0.85142 1.22872 0.99409 0.82012 0.98187 1.86521 1.41331 1.26160 1.83257 1.01072 0.74626 0.72422 0.71853 1.93456 1.69848 1.49832 1.83411 1.93431 1.80315 1.59220 1.65692 1.29907 1.28495 1.15255 1.13313 1.20318 0.93668 0.94635 0.92311 1.20471 0.99191 1.04937 1.03211 1.20848 0.97038 0.94857 0.94805 1.21366 1.00506 1.03085 0.97829 1.17016 0.89548 0.86010 0.90389 1.21493 0.99032 1.33577 1.01930 0.86555 1.27077 0.92763 0.98250 1.00008 1.70427 1.17008 1.20846 1.32113 0.83733 0.76943 0.75948 0.75357 1.19595 1.19142 1.19770 0.93285 0.92665 0.92843 0.92255 0.92180 0.91188 0.91538 0.89428 0.90385 0.90350 0.86349 0.92953 0.93453 0.78502 0.87360 0.88507 0.88648 0.87205 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.14 -2.37 5.54 -26.73 -0.15 -2.51 16 4 C 0.12 2.10 5.53 -4.04 -0.02 2.08 16 5 N -0.98 -18.62 2.77 -114.38 -0.32 -18.93 16 6 C 0.12 2.14 5.41 -4.04 -0.02 2.12 16 7 C 0.05 0.80 7.39 37.16 0.27 1.08 16 8 O -0.57 -7.61 11.92 -35.23 -0.42 -8.03 16 9 S 2.70 59.83 5.10 -107.50 -0.55 59.28 16 10 O -0.97 -23.28 14.46 -57.17 -0.83 -24.11 16 11 O -1.00 -23.07 15.72 -57.17 -0.90 -23.97 16 12 C -0.78 -18.17 5.67 -38.87 -0.22 -18.39 16 13 C 0.01 0.24 9.53 -39.67 -0.38 -0.14 16 14 C -0.26 -5.48 10.05 -39.29 -0.39 -5.88 16 15 C -0.06 -1.22 10.02 -39.66 -0.40 -1.62 16 16 C -0.21 -4.94 7.86 -38.87 -0.31 -5.24 16 17 C 0.18 4.29 5.21 -106.83 -0.56 3.73 16 18 C -0.53 -12.73 6.44 -37.74 -0.24 -12.97 16 19 H 0.12 2.81 4.06 -52.48 -0.21 2.60 16 20 C 0.04 0.98 5.03 -17.34 -0.09 0.89 16 21 N -0.78 -18.54 12.45 55.55 0.69 -17.85 16 22 Si 1.06 19.80 29.98 -169.99 -5.10 14.70 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 24 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 25 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.32 7.84 -51.93 -0.41 0.91 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.37 6.54 -51.93 -0.34 1.03 16 34 H 0.08 1.34 7.04 -51.93 -0.37 0.97 16 35 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 36 H 0.12 2.28 4.39 -51.93 -0.23 2.05 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.37 3.18 9.12 45.56 0.42 3.60 16 40 H 0.11 2.27 7.32 -52.48 -0.38 1.88 16 41 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.11 2.64 6.73 -52.48 -0.35 2.29 16 44 H 0.30 7.37 6.51 -40.82 -0.27 7.10 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -28.60 362.18 -9.83 -38.43 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -5.59 Total: 15.27 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: -2.29 Total: -40.25 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.37 Total: -36.79 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -2.15 Total: -56.11 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.10 Total: 14.70 kcal Atomic # 16 Polarization: 59.83 SS G_CDS: -0.55 Total: 59.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.60 -9.83 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601352980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.253 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds