Wall clock time and date at job start Tue Mar 31 2020 15:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.53004 * 109.47321 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.46492 * 119.99895 * 275.00156 * 5 4 3 7 7 C 1.53008 * 109.47065 * 275.69825 * 6 5 4 8 8 O 1.42900 * 109.46979 * 65.00544 * 7 6 5 9 9 S 1.65602 * 119.99613 * 95.00382 * 5 4 3 10 10 O 1.42095 * 106.39827 * 164.52037 * 9 5 4 11 11 O 1.42102 * 106.40411 * 31.60018 * 9 5 4 12 12 C 1.76202 * 107.21869 * 278.06111 * 9 5 4 13 13 C 1.37632 * 120.13156 * 112.85782 * 12 9 5 14 14 C 1.38609 * 120.25242 * 180.31843 * 13 12 9 15 15 C 1.38660 * 120.49817 * 359.68075 * 14 13 12 16 16 C 1.37594 * 120.24799 * 359.97438 * 15 14 13 17 17 C 1.40703 * 120.12338 * 292.56065 * 12 9 5 18 18 C 1.41388 * 120.24626 * 359.97357 * 17 12 9 19 19 H 1.08007 * 120.00218 * 328.62819 * 18 17 12 20 20 C 1.39946 * 120.00259 * 148.63435 * 18 17 12 21 21 N 1.30826 * 119.99496 * 339.85739 * 20 18 17 22 22 Si 1.86798 * 120.00549 * 159.86170 * 20 18 17 23 23 H 1.48498 * 109.46792 * 269.99841 * 22 20 18 24 24 H 1.48500 * 109.47165 * 29.99419 * 22 20 18 25 25 H 1.48495 * 109.47280 * 149.99647 * 22 20 18 26 26 H 1.08998 * 109.47121 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47370 * 300.00218 * 1 2 3 28 28 H 1.09006 * 109.46843 * 60.00259 * 1 2 3 29 29 H 1.09001 * 109.47334 * 240.00327 * 2 1 3 30 30 H 1.08998 * 109.47439 * 119.99887 * 2 1 3 31 31 H 1.08999 * 109.47177 * 59.99664 * 3 2 1 32 32 H 1.09002 * 109.47570 * 300.00145 * 3 2 1 33 33 H 1.09001 * 109.47041 * 60.00384 * 4 3 2 34 34 H 1.08992 * 109.46848 * 300.00171 * 4 3 2 35 35 H 1.08991 * 109.47566 * 35.70000 * 6 5 4 36 36 H 1.09005 * 109.46728 * 155.70598 * 6 5 4 37 37 H 1.08998 * 109.47192 * 185.00360 * 7 6 5 38 38 H 1.08998 * 109.46957 * 305.00141 * 7 6 5 39 39 H 0.96691 * 114.00395 * 180.02562 * 8 7 6 40 40 H 1.08009 * 119.87376 * 0.02562 * 13 12 9 41 41 H 1.07996 * 119.75373 * 179.69879 * 14 13 12 42 42 H 1.08001 * 119.87641 * 180.02562 * 15 14 13 43 43 H 1.08003 * 120.12673 * 180.02562 * 16 15 14 44 44 H 0.97004 * 120.00248 * 354.08197 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.1986 3.5505 -1.2642 7 6 5.5486 3.2120 -1.8999 8 8 5.5743 1.8279 -2.2546 9 16 4.4516 3.5636 1.4285 10 8 5.2140 4.7134 1.0882 11 8 4.9301 2.5411 2.2915 12 6 2.9517 4.1539 2.1404 13 6 2.4760 3.6002 3.3072 14 6 1.2930 4.0581 3.8659 15 6 0.5792 5.0817 3.2614 16 6 1.0396 5.6548 2.0982 17 6 2.2390 5.1973 1.5215 18 6 2.7216 5.7784 0.3263 19 1 3.7846 5.8321 0.1428 20 6 1.8220 6.2841 -0.6189 21 7 0.5749 5.8889 -0.6117 22 14 2.4017 7.5233 -1.8908 23 1 2.2287 8.8981 -1.3570 24 1 3.8361 7.2870 -2.1942 25 1 1.6014 7.3698 -3.1321 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9287 -0.8892 34 1 3.9329 0.9289 0.8908 35 1 3.3953 3.2604 -1.9412 36 1 4.1450 4.6227 -1.0748 37 1 5.6916 3.8189 -2.7939 38 1 6.3476 3.4196 -1.1882 39 1 6.4025 1.5420 -2.6637 40 1 3.0241 2.8027 3.7868 41 1 0.9246 3.6146 4.7790 42 1 -0.3412 5.4310 3.7056 43 1 0.4822 6.4522 1.6293 44 1 0.2931 5.1832 -0.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601352980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:54 Heat of formation + Delta-G solvation = -146.141396 kcal Electronic energy + Delta-G solvation = -28170.696445 eV Core-core repulsion = 24406.135753 eV Total energy + Delta-G solvation = -3764.560692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.66567 -38.77135 -38.25859 -36.98138 -36.75446 -35.87395 -34.96596 -31.99771 -31.26555 -30.94489 -28.48486 -27.18474 -24.49711 -23.59359 -23.24360 -22.94778 -21.88832 -20.20947 -19.55205 -18.94505 -18.02259 -17.81577 -17.32414 -16.70289 -16.32706 -16.15213 -15.80207 -15.54528 -15.33007 -15.03862 -14.74475 -14.49468 -14.35211 -14.15305 -14.05398 -13.60576 -13.46570 -13.16939 -13.07642 -13.02479 -12.87163 -12.78588 -12.75475 -12.36360 -12.22541 -12.14944 -11.95326 -11.90918 -11.81102 -11.53925 -11.40570 -11.09344 -10.97561 -10.84345 -10.05151 -9.76457 -9.61034 -9.24062 -6.70287 -0.25179 0.41609 0.85839 1.51579 1.61342 1.79443 2.18518 2.27821 2.58997 2.92072 3.32572 3.47298 3.62519 3.85115 4.03115 4.14045 4.18946 4.26641 4.29457 4.31467 4.41638 4.52545 4.59822 4.63280 4.76876 4.78560 4.79875 4.95183 4.98998 5.04085 5.09855 5.11829 5.22641 5.31261 5.36355 5.45349 5.49345 5.51441 5.58144 5.76413 5.83926 5.87394 6.01287 6.17738 6.58475 6.79044 6.98640 7.97388 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008789 B = 0.007650 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.169956 B = 3659.374448 C = 4483.487073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.136 4.136 4 C 0.124 3.876 5 N -0.978 5.978 6 C 0.113 3.887 7 C 0.061 3.939 8 O -0.577 6.577 9 S 2.712 3.288 10 O -0.996 6.996 11 O -1.009 7.009 12 C -0.790 4.790 13 C -0.004 4.004 14 C -0.255 4.255 15 C -0.055 4.055 16 C -0.231 4.231 17 C 0.154 3.846 18 C -0.548 4.548 19 H 0.110 0.890 20 C 0.019 3.981 21 N -0.797 5.797 22 Si 1.092 2.908 23 H -0.267 1.267 24 H -0.249 1.249 25 H -0.264 1.264 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.393 0.607 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -7.077 -5.312 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.176 4.176 4 C -0.001 4.001 5 N -0.814 5.814 6 C -0.012 4.012 7 C -0.018 4.018 8 O -0.385 6.385 9 S 2.810 3.190 10 O -0.987 6.987 11 O -1.000 7.000 12 C -0.884 4.884 13 C -0.024 4.024 14 C -0.275 4.275 15 C -0.074 4.074 16 C -0.251 4.251 17 C 0.149 3.851 18 C -0.575 4.575 19 H 0.128 0.872 20 C -0.200 4.200 21 N -0.419 5.419 22 Si 0.909 3.091 23 H -0.192 1.192 24 H -0.173 1.173 25 H -0.188 1.188 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.242 0.758 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.117 0.883 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.563 -6.072 -5.993 8.908 hybrid contribution -0.077 -0.500 1.594 1.672 sum 2.487 -6.572 -4.399 8.290 Atomic orbital electron populations 1.21742 0.95665 1.02095 1.01173 1.21432 0.96104 0.94954 1.02861 1.22014 0.96054 0.98095 1.01414 1.21468 0.93307 0.80947 1.04353 1.57055 1.81888 1.22363 1.20130 1.21717 0.97398 0.97528 0.84592 1.22678 0.96902 0.83299 0.98929 1.86439 1.43274 1.25212 1.83592 1.00640 0.74167 0.71946 0.72273 1.93415 1.70489 1.50944 1.83850 1.93401 1.80557 1.59364 1.66674 1.30192 1.28827 1.15332 1.14004 1.20613 0.94454 0.95072 0.92266 1.20862 0.98490 1.04267 1.03921 1.21191 0.97899 0.94361 0.93925 1.21401 1.00897 1.03747 0.99040 1.17299 0.90200 0.86558 0.91048 1.21540 0.98884 1.34706 1.02345 0.87210 1.28159 0.92197 0.98771 1.00902 1.70519 1.17694 1.21197 1.32471 0.83354 0.77749 0.74199 0.73844 1.19213 1.17255 1.18830 0.90953 0.94085 0.93270 0.90319 0.91467 0.94110 0.92672 0.87496 0.90635 0.89874 0.88198 0.90147 0.94359 0.75800 0.86267 0.85331 0.85698 0.88305 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.12 -2.97 5.93 30.59 0.18 -2.79 16 3 C -0.14 -4.49 5.54 30.60 0.17 -4.32 16 4 C 0.12 4.11 5.53 86.38 0.48 4.58 16 5 N -0.98 -36.98 2.77 -515.78 -1.43 -38.41 16 6 C 0.11 3.94 5.41 86.38 0.47 4.40 16 7 C 0.06 1.70 7.39 71.98 0.53 2.23 16 8 O -0.58 -13.97 11.92 -148.98 -1.78 -15.74 16 9 S 2.71 121.52 5.10 -56.49 -0.29 121.23 16 10 O -1.00 -48.43 14.46 -128.00 -1.85 -50.28 16 11 O -1.01 -46.87 15.72 -128.00 -2.01 -48.88 16 12 C -0.79 -37.68 5.67 22.73 0.13 -37.55 16 13 C 0.00 -0.19 9.53 22.21 0.21 0.02 16 14 C -0.26 -10.57 10.05 22.46 0.23 -10.35 16 15 C -0.06 -2.35 10.02 22.22 0.22 -2.13 16 16 C -0.23 -11.17 7.86 22.73 0.18 -11.00 16 17 C 0.15 7.70 5.21 -21.29 -0.11 7.59 16 18 C -0.55 -26.77 6.44 23.46 0.15 -26.62 16 19 H 0.11 5.45 4.06 -2.91 -0.01 5.43 16 20 C 0.02 0.90 5.03 85.26 0.43 1.33 16 21 N -0.80 -38.61 12.45 21.83 0.27 -38.33 16 22 Si 1.09 39.43 29.98 68.60 2.06 41.48 16 23 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 24 H -0.25 -8.20 7.11 99.48 0.71 -7.50 16 25 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.57 7.84 -2.39 -0.02 1.55 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 3.14 6.54 -2.39 -0.02 3.12 16 34 H 0.08 2.54 7.04 -2.39 -0.02 2.52 16 35 H 0.08 2.77 8.11 -2.39 -0.02 2.75 16 36 H 0.10 3.89 4.39 -2.38 -0.01 3.88 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.39 5.56 9.12 -74.06 -0.68 4.89 16 40 H 0.12 4.95 7.32 -2.91 -0.02 4.93 16 41 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 43 H 0.10 4.90 6.73 -2.91 -0.02 4.88 16 44 H 0.29 14.64 6.51 -92.70 -0.60 14.03 16 Total: -1.00 -61.90 362.18 -0.55 -62.45 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: 0.51 Total: 44.07 kcal Atomic # 6 Polarization: -81.56 SS G_CDS: 3.98 Total: -77.58 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.16 Total: -76.75 kcal Atomic # 8 Polarization: -109.26 SS G_CDS: -5.64 Total: -114.90 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.06 Total: 41.48 kcal Atomic # 16 Polarization: 121.52 SS G_CDS: -0.29 Total: 121.23 kcal Total: -61.90 -0.55 -62.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601352980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.696 kcal (2) G-P(sol) polarization free energy of solvation -61.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds