Wall clock time and date at job start Tue Mar 31 2020 14:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46788 * 2 1 4 4 O 1.42904 * 109.47239 * 60.48470 * 3 2 1 5 5 C 1.52995 * 109.47453 * 180.48345 * 3 2 1 6 6 C 1.53005 * 109.47024 * 301.49304 * 5 3 2 7 7 C 1.53001 * 109.47489 * 300.48356 * 3 2 1 8 8 N 1.46497 * 109.47560 * 184.99997 * 7 3 2 9 9 S 1.65600 * 120.00054 * 161.89219 * 8 7 3 10 10 O 1.42104 * 106.40252 * 313.02116 * 9 8 7 11 11 O 1.42101 * 106.40090 * 180.10685 * 9 8 7 12 12 C 1.76197 * 107.22193 * 66.56254 * 9 8 7 13 13 C 1.37638 * 120.12553 * 111.84572 * 12 9 8 14 14 C 1.38617 * 120.24718 * 180.32377 * 13 12 9 15 15 C 1.38658 * 120.49760 * 359.67275 * 14 13 12 16 16 C 1.37589 * 120.24878 * 0.02562 * 15 14 13 17 17 C 1.40690 * 120.12940 * 291.54849 * 12 9 8 18 18 C 1.41396 * 120.24602 * 359.97438 * 17 12 9 19 19 H 1.08006 * 119.99798 * 332.56978 * 18 17 12 20 20 C 1.39943 * 120.00529 * 152.57228 * 18 17 12 21 21 N 1.30824 * 119.99599 * 337.05719 * 20 18 17 22 22 Si 1.86800 * 120.00100 * 157.06041 * 20 18 17 23 23 H 1.48502 * 109.47001 * 269.99684 * 22 20 18 24 24 H 1.48499 * 109.47341 * 29.99926 * 22 20 18 25 25 H 1.48503 * 109.46830 * 149.99767 * 22 20 18 26 26 H 1.08994 * 109.47285 * 63.96949 * 1 2 3 27 27 H 1.09000 * 109.46637 * 183.96752 * 1 2 3 28 28 H 1.09003 * 109.46912 * 303.96297 * 1 2 3 29 29 H 1.09002 * 109.47147 * 240.00857 * 2 1 3 30 30 H 1.08991 * 109.47692 * 119.99939 * 2 1 3 31 31 H 0.96702 * 113.99642 * 300.00047 * 4 3 2 32 32 H 1.09005 * 109.47136 * 61.49216 * 5 3 2 33 33 H 1.08994 * 109.47470 * 181.49236 * 5 3 2 34 34 H 1.09004 * 109.46931 * 66.55836 * 6 5 3 35 35 H 1.09000 * 109.47323 * 186.55390 * 6 5 3 36 36 H 1.08998 * 109.47232 * 306.55936 * 6 5 3 37 37 H 1.09000 * 109.47050 * 64.99689 * 7 3 2 38 38 H 1.09002 * 109.47173 * 305.00102 * 7 3 2 39 39 H 0.97001 * 120.00036 * 341.88944 * 8 7 3 40 40 H 1.08005 * 119.88193 * 0.02562 * 13 12 9 41 41 H 1.08003 * 119.75185 * 179.69678 * 14 13 12 42 42 H 1.08007 * 119.86807 * 180.02562 * 15 14 13 43 43 H 1.08004 * 120.12491 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00057 * 354.80797 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5729 2.1129 1.1725 5 6 3.5699 1.4427 -0.0122 6 6 4.0897 0.6857 1.2117 7 6 1.5200 2.1673 -1.2431 8 7 2.1036 3.5096 -1.3057 9 16 2.0925 4.3517 -2.7316 10 8 2.5413 3.4497 -3.7337 11 8 2.7243 5.5967 -2.4672 12 6 0.4106 4.7173 -3.1084 13 6 -0.0400 6.0171 -3.0662 14 6 -1.3643 6.3069 -3.3557 15 6 -2.2478 5.2942 -3.6971 16 6 -1.8178 3.9884 -3.7516 17 6 -0.4755 3.6824 -3.4597 18 6 -0.0223 2.3441 -3.5129 19 1 1.0153 2.1335 -3.7265 20 6 -0.9180 1.2925 -3.2890 21 7 -2.0168 1.5024 -2.6107 22 14 -0.5446 -0.4110 -3.9585 23 1 -1.1171 -0.5432 -5.3224 24 1 0.9260 -0.6083 -4.0177 25 1 -1.1461 -1.4357 -3.0677 26 1 -0.3633 0.4510 -0.9234 27 1 -0.3632 -1.0252 0.0711 28 1 -0.3633 0.5741 0.8524 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 0.6095 2.1508 1.2463 32 1 3.9261 0.9548 -0.9195 33 1 3.9333 2.4699 0.0146 34 1 3.8248 -0.3682 1.1265 35 1 5.1738 0.7845 1.2666 36 1 3.6408 1.1015 2.1137 37 1 0.4341 2.2453 -1.1906 38 1 1.8013 1.6069 -2.1347 39 1 2.4965 3.9052 -0.5119 40 1 0.6396 6.8139 -2.8019 41 1 -1.7105 7.3291 -3.3154 42 1 -3.2774 5.5315 -3.9211 43 1 -2.5076 3.2012 -4.0181 44 1 -2.1750 2.3664 -2.1990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601353329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:38 Heat of formation + Delta-G solvation = -129.471106 kcal Electronic energy + Delta-G solvation = -28331.750539 eV Core-core repulsion = 24567.912725 eV Total energy + Delta-G solvation = -3763.837814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.03455 -37.91443 -36.36171 -34.93555 -34.39536 -33.79434 -32.98055 -31.64335 -30.27552 -29.50798 -27.14023 -25.53077 -23.73303 -22.65996 -21.87048 -21.26188 -19.71018 -18.69459 -18.24288 -17.15702 -16.79046 -16.07872 -15.24621 -15.00619 -14.90572 -14.74237 -14.17966 -14.08526 -13.78375 -13.67461 -13.50309 -13.22734 -13.06523 -12.60078 -12.36704 -12.04443 -11.80396 -11.75713 -11.50364 -11.41027 -11.34432 -11.30758 -11.19135 -11.13185 -10.98142 -10.89470 -10.60595 -10.58376 -10.47636 -10.17488 -9.88879 -9.56437 -9.37622 -9.29596 -8.65103 -8.27691 -7.87333 -7.53995 -4.92474 1.49433 2.17672 2.57807 2.99604 3.08693 3.19348 3.73912 3.94362 4.23486 4.47125 4.64574 4.94014 4.96750 5.05870 5.10864 5.39455 5.47333 5.50583 5.60962 5.72066 5.87285 5.89950 5.94239 6.00835 6.07737 6.12617 6.21702 6.24456 6.27264 6.31503 6.39205 6.53415 6.57976 6.63064 6.70231 6.84077 7.09139 7.23199 7.33151 7.51165 7.62219 7.66249 7.74136 7.88147 7.91684 8.32584 8.50169 9.66551 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.007469 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.742824 B = 3747.871960 C = 5152.777677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.148 4.148 3 C 0.124 3.876 4 O -0.558 6.558 5 C -0.111 4.111 6 C -0.149 4.149 7 C 0.102 3.898 8 N -1.115 6.115 9 S 2.707 3.293 10 O -0.974 6.974 11 O -0.999 6.999 12 C -0.781 4.781 13 C 0.013 3.987 14 C -0.262 4.262 15 C -0.056 4.056 16 C -0.213 4.213 17 C 0.168 3.832 18 C -0.529 4.529 19 H 0.120 0.880 20 C 0.046 3.954 21 N -0.774 5.774 22 Si 1.047 2.953 23 H -0.270 1.270 24 H -0.264 1.264 25 H -0.269 1.269 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.375 0.625 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.409 0.591 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -4.563 5.925 8.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C 0.082 3.918 4 O -0.365 6.365 5 C -0.148 4.148 6 C -0.206 4.206 7 C -0.024 4.024 8 N -0.873 5.873 9 S 2.804 3.196 10 O -0.964 6.964 11 O -0.990 6.990 12 C -0.875 4.875 13 C -0.006 4.006 14 C -0.282 4.282 15 C -0.074 4.074 16 C -0.232 4.232 17 C 0.163 3.837 18 C -0.556 4.556 19 H 0.137 0.863 20 C -0.179 4.179 21 N -0.396 5.396 22 Si 0.869 3.131 23 H -0.195 1.195 24 H -0.189 1.189 25 H -0.194 1.194 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.223 0.777 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.243 0.757 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.922 -5.912 5.297 8.854 hybrid contribution -0.968 1.847 0.332 2.112 sum 2.954 -4.064 5.628 7.545 Atomic orbital electron populations 1.22010 0.95001 1.02195 1.03564 1.22198 0.97027 0.96562 1.02824 1.21541 0.94432 0.90863 0.84936 1.86451 1.26965 1.79626 1.43455 1.21493 0.92646 1.01706 0.98982 1.21759 1.00049 1.00022 0.98757 1.22399 0.99022 0.82370 0.98643 1.55430 1.75523 1.27114 1.29188 1.00838 0.74465 0.71811 0.72520 1.93467 1.81049 1.64888 1.57042 1.93453 1.76122 1.44040 1.85388 1.29816 1.24381 1.00831 1.32506 1.20322 0.95061 0.94018 0.91246 1.20478 0.94333 0.97579 1.15812 1.20848 0.97362 0.93586 0.95647 1.21371 0.97313 0.95584 1.08977 1.17031 0.90768 0.91436 0.84474 1.21644 1.01727 0.91070 1.41118 0.86260 1.27027 0.91638 1.06000 0.93197 1.70469 1.22451 1.28886 1.17827 0.83898 0.78062 0.73171 0.77969 1.19518 1.18868 1.19375 0.89975 0.92609 0.93017 0.90923 0.91043 0.77689 0.90562 0.91127 0.92875 0.93286 0.91907 0.89766 0.89008 0.75734 0.87281 0.88506 0.88644 0.87009 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.23 37.16 0.34 -2.02 16 2 C -0.15 -1.94 4.80 -26.73 -0.13 -2.06 16 3 C 0.12 1.77 0.50 -90.62 -0.05 1.72 16 4 O -0.56 -7.77 12.00 -35.23 -0.42 -8.19 16 5 C -0.11 -1.49 4.96 -26.73 -0.13 -1.62 16 6 C -0.15 -1.71 9.26 37.16 0.34 -1.37 16 7 C 0.10 1.76 3.07 -4.04 -0.01 1.74 16 8 N -1.12 -19.87 5.35 -10.61 -0.06 -19.92 16 9 S 2.71 57.91 5.44 -107.50 -0.58 57.32 16 10 O -0.97 -23.04 14.91 -57.17 -0.85 -23.89 16 11 O -1.00 -22.67 16.97 -57.17 -0.97 -23.64 16 12 C -0.78 -18.00 5.97 -38.88 -0.23 -18.24 16 13 C 0.01 0.30 9.53 -39.66 -0.38 -0.08 16 14 C -0.26 -5.55 10.05 -39.29 -0.39 -5.94 16 15 C -0.06 -1.19 10.02 -39.66 -0.40 -1.58 16 16 C -0.21 -4.92 7.88 -38.88 -0.31 -5.22 16 17 C 0.17 3.99 5.28 -106.83 -0.56 3.42 16 18 C -0.53 -12.08 4.80 -37.74 -0.18 -12.27 16 19 H 0.12 2.82 3.98 -52.48 -0.21 2.61 16 20 C 0.05 0.98 3.39 -17.34 -0.06 0.92 16 21 N -0.77 -16.79 11.96 55.55 0.66 -16.13 16 22 Si 1.05 19.12 29.52 -169.99 -5.02 14.11 16 23 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 24 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 25 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 26 H 0.08 1.34 4.52 -51.93 -0.23 1.10 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.65 6.60 -51.93 -0.34 0.31 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.84 6.58 -51.93 -0.34 0.50 16 31 H 0.37 4.62 7.26 45.56 0.33 4.95 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.97 7.01 -51.93 -0.36 0.61 16 34 H 0.05 0.56 6.79 -51.93 -0.35 0.21 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.76 7.54 -51.93 -0.39 0.37 16 37 H 0.08 1.56 5.20 -51.93 -0.27 1.29 16 38 H 0.09 1.70 5.92 -51.93 -0.31 1.40 16 39 H 0.41 6.53 7.70 -34.47 -0.27 6.27 16 40 H 0.11 2.26 7.33 -52.48 -0.38 1.88 16 41 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 43 H 0.11 2.59 6.52 -52.48 -0.34 2.25 16 44 H 0.30 6.80 6.51 -40.82 -0.27 6.53 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -27.08 344.36 -9.27 -36.34 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -5.07 Total: 21.40 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: -2.14 Total: -42.59 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.61 Total: -36.05 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -2.25 Total: -55.72 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 57.91 SS G_CDS: -0.58 Total: 57.32 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.08 -9.27 -36.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601353329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.128 kcal (2) G-P(sol) polarization free energy of solvation -27.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds