Wall clock time and date at job start Tue Mar 31 2020 14:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46788 * 2 1 4 4 O 1.42904 * 109.47239 * 60.48470 * 3 2 1 5 5 C 1.52995 * 109.47453 * 180.48345 * 3 2 1 6 6 C 1.53005 * 109.47024 * 301.49304 * 5 3 2 7 7 C 1.53001 * 109.47489 * 300.48356 * 3 2 1 8 8 N 1.46497 * 109.47560 * 184.99997 * 7 3 2 9 9 S 1.65600 * 120.00054 * 161.89219 * 8 7 3 10 10 O 1.42104 * 106.40252 * 313.02116 * 9 8 7 11 11 O 1.42101 * 106.40090 * 180.10685 * 9 8 7 12 12 C 1.76197 * 107.22193 * 66.56254 * 9 8 7 13 13 C 1.37638 * 120.12553 * 111.84572 * 12 9 8 14 14 C 1.38617 * 120.24718 * 180.32377 * 13 12 9 15 15 C 1.38658 * 120.49760 * 359.67275 * 14 13 12 16 16 C 1.37589 * 120.24878 * 0.02562 * 15 14 13 17 17 C 1.40690 * 120.12940 * 291.54849 * 12 9 8 18 18 C 1.41396 * 120.24602 * 359.97438 * 17 12 9 19 19 H 1.08006 * 119.99798 * 332.56978 * 18 17 12 20 20 C 1.39943 * 120.00529 * 152.57228 * 18 17 12 21 21 N 1.30824 * 119.99599 * 337.05719 * 20 18 17 22 22 Si 1.86800 * 120.00100 * 157.06041 * 20 18 17 23 23 H 1.48502 * 109.47001 * 269.99684 * 22 20 18 24 24 H 1.48499 * 109.47341 * 29.99926 * 22 20 18 25 25 H 1.48503 * 109.46830 * 149.99767 * 22 20 18 26 26 H 1.08994 * 109.47285 * 63.96949 * 1 2 3 27 27 H 1.09000 * 109.46637 * 183.96752 * 1 2 3 28 28 H 1.09003 * 109.46912 * 303.96297 * 1 2 3 29 29 H 1.09002 * 109.47147 * 240.00857 * 2 1 3 30 30 H 1.08991 * 109.47692 * 119.99939 * 2 1 3 31 31 H 0.96702 * 113.99642 * 300.00047 * 4 3 2 32 32 H 1.09005 * 109.47136 * 61.49216 * 5 3 2 33 33 H 1.08994 * 109.47470 * 181.49236 * 5 3 2 34 34 H 1.09004 * 109.46931 * 66.55836 * 6 5 3 35 35 H 1.09000 * 109.47323 * 186.55390 * 6 5 3 36 36 H 1.08998 * 109.47232 * 306.55936 * 6 5 3 37 37 H 1.09000 * 109.47050 * 64.99689 * 7 3 2 38 38 H 1.09002 * 109.47173 * 305.00102 * 7 3 2 39 39 H 0.97001 * 120.00036 * 341.88944 * 8 7 3 40 40 H 1.08005 * 119.88193 * 0.02562 * 13 12 9 41 41 H 1.08003 * 119.75185 * 179.69678 * 14 13 12 42 42 H 1.08007 * 119.86807 * 180.02562 * 15 14 13 43 43 H 1.08004 * 120.12491 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00057 * 354.80797 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5729 2.1129 1.1725 5 6 3.5699 1.4427 -0.0122 6 6 4.0897 0.6857 1.2117 7 6 1.5200 2.1673 -1.2431 8 7 2.1036 3.5096 -1.3057 9 16 2.0925 4.3517 -2.7316 10 8 2.5413 3.4497 -3.7337 11 8 2.7243 5.5967 -2.4672 12 6 0.4106 4.7173 -3.1084 13 6 -0.0400 6.0171 -3.0662 14 6 -1.3643 6.3069 -3.3557 15 6 -2.2478 5.2942 -3.6971 16 6 -1.8178 3.9884 -3.7516 17 6 -0.4755 3.6824 -3.4597 18 6 -0.0223 2.3441 -3.5129 19 1 1.0153 2.1335 -3.7265 20 6 -0.9180 1.2925 -3.2890 21 7 -2.0168 1.5024 -2.6107 22 14 -0.5446 -0.4110 -3.9585 23 1 -1.1171 -0.5432 -5.3224 24 1 0.9260 -0.6083 -4.0177 25 1 -1.1461 -1.4357 -3.0677 26 1 -0.3633 0.4510 -0.9234 27 1 -0.3632 -1.0252 0.0711 28 1 -0.3633 0.5741 0.8524 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 0.6095 2.1508 1.2463 32 1 3.9261 0.9548 -0.9195 33 1 3.9333 2.4699 0.0146 34 1 3.8248 -0.3682 1.1265 35 1 5.1738 0.7845 1.2666 36 1 3.6408 1.1015 2.1137 37 1 0.4341 2.2453 -1.1906 38 1 1.8013 1.6069 -2.1347 39 1 2.4965 3.9052 -0.5119 40 1 0.6396 6.8139 -2.8019 41 1 -1.7105 7.3291 -3.3154 42 1 -3.2774 5.5315 -3.9211 43 1 -2.5076 3.2012 -4.0181 44 1 -2.1750 2.3664 -2.1990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601353329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:37 Heat of formation + Delta-G solvation = -147.951611 kcal Electronic energy + Delta-G solvation = -28332.551914 eV Core-core repulsion = 24567.912725 eV Total energy + Delta-G solvation = -3764.639189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.24014 -39.58732 -38.13975 -36.73611 -36.02497 -35.21292 -34.12016 -32.68295 -31.98367 -31.22146 -28.38670 -27.20143 -24.97726 -23.75779 -23.51687 -22.96708 -20.87573 -20.33975 -19.91617 -18.69307 -18.24514 -17.68120 -16.75283 -16.56924 -16.32571 -16.07669 -15.65200 -15.62290 -15.12344 -15.08008 -14.77451 -14.57336 -14.46516 -14.22367 -13.87995 -13.39716 -13.19386 -13.05086 -13.02753 -12.97210 -12.85577 -12.83182 -12.71392 -12.48948 -12.42966 -12.24380 -12.01525 -11.87317 -11.61965 -11.54426 -11.33744 -11.04682 -10.94543 -10.69842 -10.16905 -9.99518 -9.61187 -9.25220 -6.66685 -0.19636 0.43933 0.87699 1.50230 1.58860 1.77136 2.22878 2.33888 2.58064 2.92550 3.35952 3.38689 3.66488 3.80298 3.87371 4.01654 4.22780 4.33637 4.37601 4.48830 4.57762 4.59777 4.62909 4.68931 4.80865 4.83284 4.93416 5.07532 5.10430 5.12754 5.17126 5.22906 5.29173 5.34294 5.36912 5.50847 5.55119 5.57250 5.61046 5.78726 5.87602 6.01066 6.17831 6.26623 6.59958 6.77214 6.81423 7.94118 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.007469 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.742824 B = 3747.871960 C = 5152.777677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.144 4.144 3 C 0.131 3.869 4 O -0.560 6.560 5 C -0.117 4.117 6 C -0.142 4.142 7 C 0.103 3.897 8 N -1.101 6.101 9 S 2.723 3.277 10 O -1.000 7.000 11 O -1.014 7.014 12 C -0.801 4.801 13 C -0.003 4.003 14 C -0.264 4.264 15 C -0.055 4.055 16 C -0.234 4.234 17 C 0.146 3.854 18 C -0.537 4.537 19 H 0.109 0.891 20 C 0.032 3.968 21 N -0.775 5.775 22 Si 1.071 2.929 23 H -0.271 1.271 24 H -0.255 1.255 25 H -0.252 1.252 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.381 0.619 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.419 0.581 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -5.375 6.933 9.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.182 4.182 3 C 0.089 3.911 4 O -0.368 6.368 5 C -0.155 4.155 6 C -0.199 4.199 7 C -0.023 4.023 8 N -0.862 5.862 9 S 2.819 3.181 10 O -0.990 6.990 11 O -1.005 7.005 12 C -0.895 4.895 13 C -0.022 4.022 14 C -0.284 4.284 15 C -0.074 4.074 16 C -0.253 4.253 17 C 0.141 3.859 18 C -0.563 4.563 19 H 0.126 0.874 20 C -0.191 4.191 21 N -0.395 5.395 22 Si 0.888 3.112 23 H -0.196 1.196 24 H -0.179 1.179 25 H -0.175 1.175 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.231 0.769 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.255 0.745 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.122 0.878 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.926 -6.700 6.317 10.010 hybrid contribution -1.004 2.166 0.038 2.388 sum 2.922 -4.534 6.355 8.335 Atomic orbital electron populations 1.22001 0.95539 1.02713 1.02638 1.22187 0.96491 0.95648 1.03854 1.21477 0.94987 0.91170 0.83454 1.86444 1.27685 1.79689 1.42962 1.21569 0.91973 1.01757 1.00192 1.21709 1.00720 1.00278 0.97233 1.22393 0.98308 0.81813 0.99789 1.55089 1.75355 1.27250 1.28492 1.00217 0.73776 0.71311 0.72759 1.93430 1.81414 1.65481 1.58629 1.93419 1.76373 1.44943 1.85739 1.30060 1.24952 1.01323 1.33186 1.20615 0.96039 0.94055 0.91535 1.20850 0.93866 0.99039 1.14647 1.21187 0.98876 0.92887 0.94453 1.21419 0.97175 0.96376 1.10370 1.17291 0.91392 0.92072 0.85133 1.21636 1.01512 0.91420 1.41739 0.87362 1.27803 0.90968 1.07710 0.92593 1.70531 1.22676 1.28252 1.18084 0.83631 0.78689 0.71068 0.77774 1.19593 1.17914 1.17526 0.92493 0.91621 0.92103 0.90759 0.89057 0.76939 0.90444 0.91869 0.91688 0.92100 0.92467 0.91121 0.90517 0.74541 0.86267 0.85579 0.85757 0.87764 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 9.23 71.98 0.66 -3.82 16 2 C -0.14 -3.47 4.80 30.60 0.15 -3.33 16 3 C 0.13 3.58 0.50 -10.79 -0.01 3.57 16 4 O -0.56 -14.75 12.00 -148.98 -1.79 -16.54 16 5 C -0.12 -2.98 4.96 30.59 0.15 -2.83 16 6 C -0.14 -2.93 9.26 71.98 0.67 -2.26 16 7 C 0.10 3.55 3.07 86.38 0.26 3.81 16 8 N -1.10 -39.32 5.35 -187.49 -1.00 -40.32 16 9 S 2.72 117.85 5.44 -56.49 -0.31 117.54 16 10 O -1.00 -48.15 14.91 -128.00 -1.91 -50.06 16 11 O -1.01 -46.10 16.97 -128.00 -2.17 -48.27 16 12 C -0.80 -37.33 5.97 22.73 0.14 -37.19 16 13 C 0.00 -0.12 9.53 22.22 0.21 0.09 16 14 C -0.26 -10.82 10.05 22.46 0.23 -10.60 16 15 C -0.06 -2.31 10.02 22.22 0.22 -2.08 16 16 C -0.23 -10.85 7.88 22.73 0.18 -10.67 16 17 C 0.15 7.03 5.28 -21.29 -0.11 6.92 16 18 C -0.54 -24.90 4.80 23.46 0.11 -24.79 16 19 H 0.11 5.23 3.98 -2.91 -0.01 5.22 16 20 C 0.03 1.35 3.39 85.26 0.29 1.64 16 21 N -0.77 -33.65 11.96 21.83 0.26 -33.39 16 22 Si 1.07 37.68 29.52 68.60 2.02 39.71 16 23 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 25 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 26 H 0.06 1.80 4.52 -2.39 -0.01 1.79 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.43 6.60 -2.39 -0.02 1.42 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 1.87 6.58 -2.39 -0.02 1.86 16 31 H 0.38 8.91 7.26 -74.06 -0.54 8.37 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.06 1.67 7.01 -2.39 -0.02 1.66 16 34 H 0.06 1.18 6.79 -2.38 -0.02 1.16 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.25 7.54 -2.39 -0.02 1.23 16 37 H 0.07 2.64 5.20 -2.39 -0.01 2.63 16 38 H 0.08 2.88 5.92 -2.39 -0.01 2.87 16 39 H 0.42 13.23 7.70 -96.75 -0.75 12.49 16 40 H 0.12 4.89 7.33 -2.91 -0.02 4.87 16 41 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.10 4.90 6.52 -2.91 -0.02 4.88 16 44 H 0.29 13.35 6.51 -92.71 -0.60 12.75 16 Total: -1.00 -57.01 344.36 -1.80 -58.81 By element: Atomic # 1 Polarization: 54.11 SS G_CDS: -0.06 Total: 54.05 kcal Atomic # 6 Polarization: -84.69 SS G_CDS: 3.15 Total: -81.53 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -0.74 Total: -73.71 kcal Atomic # 8 Polarization: -108.99 SS G_CDS: -5.87 Total: -114.86 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.02 Total: 39.71 kcal Atomic # 16 Polarization: 117.85 SS G_CDS: -0.31 Total: 117.54 kcal Total: -57.01 -1.80 -58.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601353329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.141 kcal (2) G-P(sol) polarization free energy of solvation -57.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds