Wall clock time and date at job start Tue Mar 31 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47311 * 119.99826 * 2 1 3 5 5 C 1.53010 * 109.46756 * 60.00332 * 4 2 1 6 6 O 1.42898 * 109.47288 * 300.00356 * 4 2 1 7 7 C 1.52996 * 109.47238 * 179.97438 * 4 2 1 8 8 N 1.46509 * 109.47111 * 185.00090 * 7 4 2 9 9 S 1.65598 * 120.00050 * 164.28757 * 8 7 4 10 10 O 1.42102 * 106.40194 * 307.75687 * 9 8 7 11 11 O 1.42095 * 106.40514 * 174.83510 * 9 8 7 12 12 C 1.76196 * 107.21785 * 61.29306 * 9 8 7 13 13 C 1.37649 * 120.13061 * 244.37839 * 12 9 8 14 14 C 1.38602 * 120.24957 * 180.29593 * 13 12 9 15 15 C 1.38657 * 120.50097 * 359.45102 * 14 13 12 16 16 C 1.37601 * 120.25203 * 0.54981 * 15 14 13 17 17 C 1.40694 * 120.12771 * 64.40142 * 12 9 8 18 18 C 1.41400 * 120.24469 * 359.95907 * 17 12 9 19 19 H 1.07998 * 119.99546 * 331.83809 * 18 17 12 20 20 C 1.39939 * 119.99926 * 151.83835 * 18 17 12 21 21 N 1.30824 * 120.00389 * 347.97421 * 20 18 17 22 22 Si 1.86804 * 119.99854 * 167.97435 * 20 18 17 23 23 H 1.48497 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47015 * 120.00043 * 22 20 18 25 25 H 1.48496 * 109.47498 * 239.99936 * 22 20 18 26 26 H 1.08998 * 109.46687 * 299.99733 * 1 2 3 27 27 H 1.09002 * 109.46617 * 59.99756 * 1 2 3 28 28 H 1.08999 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47424 * 240.00158 * 2 1 3 30 30 H 1.09008 * 109.47425 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47356 * 299.99947 * 3 2 1 32 32 H 1.08998 * 109.47083 * 60.00509 * 3 2 1 33 33 H 1.08997 * 109.46775 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.46833 * 299.99609 * 5 4 2 35 35 H 1.08992 * 109.47122 * 59.99734 * 5 4 2 36 36 H 0.96698 * 113.99873 * 299.99403 * 6 4 2 37 37 H 1.08994 * 109.47274 * 65.00771 * 7 4 2 38 38 H 1.09003 * 109.47760 * 305.00245 * 7 4 2 39 39 H 0.96994 * 119.99943 * 344.29053 * 8 7 4 40 40 H 1.08002 * 119.86698 * 0.02696 * 13 12 9 41 41 H 1.07999 * 119.75259 * 179.70013 * 14 13 12 42 42 H 1.08000 * 119.87867 * 180.30362 * 15 14 13 43 43 H 1.07990 * 120.13190 * 179.74727 * 16 15 14 44 44 H 0.97000 * 120.00227 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5301 -2.1638 1.2492 6 8 1.5637 -0.0476 2.4160 7 6 3.5700 -0.7217 1.2489 8 7 4.0583 -1.5140 2.3804 9 16 5.6357 -2.0165 2.4199 10 8 5.8801 -2.6690 1.1814 11 8 5.8253 -2.6450 3.6801 12 6 6.6435 -0.5712 2.4281 13 6 7.4844 -0.3092 1.3703 14 6 8.2827 0.8238 1.3771 15 6 8.2362 1.7112 2.4414 16 6 7.4031 1.4695 3.5096 17 6 6.5922 0.3193 3.5162 18 6 5.7319 0.0607 4.6082 19 1 4.8237 -0.5041 4.4581 20 6 6.0574 0.5366 5.8833 21 7 7.2538 1.0106 6.1190 22 14 4.7835 0.4951 7.2490 23 1 3.5190 -0.0842 6.7289 24 1 5.2860 -0.3400 8.3694 25 1 4.5331 1.8759 7.7345 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.8930 -2.6775 2.1394 34 1 0.4400 -2.1638 1.2492 35 1 1.8934 -2.6775 0.3592 36 1 1.8491 0.8739 2.4822 37 1 3.9337 0.3018 1.3383 38 1 3.9331 -1.1563 0.3175 39 1 3.4577 -1.7442 3.1064 40 1 7.5254 -0.9914 0.5340 41 1 8.9431 1.0191 0.5451 42 1 8.8590 2.5935 2.4340 43 1 7.3714 2.1599 4.3394 44 1 7.4792 1.3408 7.0027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601353778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:46 Heat of formation + Delta-G solvation = -125.065723 kcal Electronic energy + Delta-G solvation = -27552.086798 eV Core-core repulsion = 23788.440016 eV Total energy + Delta-G solvation = -3763.646782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.29862 -37.59603 -36.19194 -34.81254 -34.20562 -33.84461 -33.82345 -30.28723 -29.94068 -29.56207 -27.75941 -25.59959 -25.31447 -22.34517 -21.66407 -21.13863 -19.81632 -18.53808 -17.70406 -17.01386 -16.80136 -16.14251 -15.50519 -15.37254 -15.06793 -14.58835 -14.33973 -14.28354 -13.84426 -13.29825 -13.16702 -12.97170 -12.76655 -12.50842 -12.37170 -12.24347 -12.07864 -11.88238 -11.80189 -11.53426 -11.27188 -11.22335 -11.18608 -11.16370 -11.06055 -10.99146 -10.90767 -10.70972 -10.48148 -10.40018 -9.90151 -9.67782 -9.45446 -9.41761 -8.72545 -8.04493 -7.61549 -7.03604 -4.76302 1.55911 2.32944 2.71721 2.98487 3.05838 3.10608 3.78671 3.91919 4.33648 4.41276 4.67896 4.68610 4.74187 4.83914 5.08858 5.27415 5.33774 5.45926 5.56029 5.66123 5.66969 5.74187 5.78965 5.88101 5.88667 5.95067 6.01414 6.03757 6.14828 6.22894 6.28279 6.35367 6.38274 6.43432 6.77990 6.95086 7.08185 7.30399 7.48503 7.57740 7.68302 7.78581 7.80077 7.89346 8.29145 8.50332 8.64348 9.89202 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.005688 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.286830 B = 4921.119704 C = 5694.945782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C -0.159 4.159 4 C 0.132 3.868 5 C -0.141 4.141 6 O -0.552 6.552 7 C 0.099 3.901 8 N -1.115 6.115 9 S 2.700 3.300 10 O -1.000 7.000 11 O -0.965 6.965 12 C -0.776 4.776 13 C -0.003 4.003 14 C -0.251 4.251 15 C -0.077 4.077 16 C -0.159 4.159 17 C 0.186 3.814 18 C -0.443 4.443 19 H 0.090 0.910 20 C 0.080 3.920 21 N -0.776 5.776 22 Si 0.915 3.085 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.270 1.270 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.376 0.624 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.414 0.586 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.594 1.976 -7.311 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.216 4.216 4 C 0.089 3.911 5 C -0.198 4.198 6 O -0.359 6.359 7 C -0.028 4.028 8 N -0.873 5.873 9 S 2.798 3.202 10 O -0.990 6.990 11 O -0.956 6.956 12 C -0.871 4.871 13 C -0.023 4.023 14 C -0.272 4.272 15 C -0.096 4.096 16 C -0.178 4.178 17 C 0.181 3.819 18 C -0.472 4.472 19 H 0.108 0.892 20 C -0.141 4.141 21 N -0.399 5.399 22 Si 0.738 3.262 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.195 1.195 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.249 0.751 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.142 0.858 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.342 0.615 -7.143 12.584 hybrid contribution -0.012 1.369 0.818 1.595 sum -10.354 1.984 -6.325 12.295 Atomic orbital electron populations 1.21791 0.94519 1.01945 1.01706 1.21742 0.96883 0.96904 0.98493 1.21969 1.01894 0.95656 1.02106 1.21350 0.91337 0.93222 0.85147 1.21787 1.01463 0.93522 1.03035 1.86519 1.76543 1.29274 1.43527 1.21853 0.94937 0.96425 0.89616 1.55561 1.29976 1.70741 1.31028 1.01073 0.72195 0.74392 0.72588 1.93441 1.85018 1.74044 1.46544 1.93543 1.84418 1.75088 1.42540 1.29854 1.24826 1.24360 1.08109 1.20250 0.92468 0.94988 0.94626 1.20475 1.06846 0.99256 1.00581 1.20898 0.97142 0.97354 0.94203 1.21517 0.99858 0.98615 0.97841 1.17008 0.88412 0.87923 0.88536 1.19931 1.06719 1.28395 0.92113 0.89198 1.25963 0.95766 0.91851 1.00533 1.69790 1.18599 1.27587 1.23948 0.86123 0.81381 0.78875 0.79823 1.17534 1.19393 1.19518 0.92013 0.93094 0.92467 0.90210 0.91659 0.92332 0.92343 0.91484 0.91732 0.91067 0.77497 0.91219 0.90283 0.75101 0.87508 0.88806 0.88883 0.85759 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.69 37.16 0.32 -0.97 16 2 C -0.12 -1.20 2.34 -90.62 -0.21 -1.42 16 3 C -0.16 -1.51 8.54 37.16 0.32 -1.19 16 4 C 0.13 1.59 0.50 -90.62 -0.04 1.55 16 5 C -0.14 -1.66 8.26 37.16 0.31 -1.35 16 6 O -0.55 -7.07 12.06 -35.23 -0.42 -7.49 16 7 C 0.10 1.45 4.81 -4.04 -0.02 1.43 16 8 N -1.11 -19.42 4.42 -10.61 -0.05 -19.46 16 9 S 2.70 58.91 4.94 -107.50 -0.53 58.37 16 10 O -1.00 -22.61 16.56 -57.17 -0.95 -23.55 16 11 O -0.97 -24.22 16.62 -57.17 -0.95 -25.17 16 12 C -0.78 -18.35 5.86 -38.87 -0.23 -18.58 16 13 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 14 C -0.25 -5.43 10.05 -39.29 -0.39 -5.83 16 15 C -0.08 -1.71 10.02 -39.66 -0.40 -2.10 16 16 C -0.16 -3.86 8.66 -38.87 -0.34 -4.20 16 17 C 0.19 4.66 5.55 -106.82 -0.59 4.07 16 18 C -0.44 -10.99 7.67 -37.74 -0.29 -11.28 16 19 H 0.09 2.10 5.77 -52.49 -0.30 1.80 16 20 C 0.08 1.91 5.23 -17.34 -0.09 1.82 16 21 N -0.78 -19.01 10.87 55.55 0.60 -18.40 16 22 Si 0.91 18.06 29.58 -169.99 -5.03 13.03 16 23 H -0.25 -4.91 7.11 56.52 0.40 -4.51 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 26 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.67 6.54 -51.92 -0.34 0.33 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.52 6.78 -51.93 -0.35 0.17 16 33 H 0.07 0.85 6.91 -51.93 -0.36 0.49 16 34 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.38 4.10 7.33 45.56 0.33 4.44 16 37 H 0.07 1.02 6.71 -51.93 -0.35 0.67 16 38 H 0.08 1.13 7.83 -51.93 -0.41 0.73 16 39 H 0.41 6.85 7.45 -34.47 -0.26 6.59 16 40 H 0.11 2.23 7.33 -52.49 -0.38 1.84 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.12 3.06 6.22 -52.49 -0.33 2.73 16 44 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -30.53 358.50 -9.44 -39.97 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -5.48 Total: 15.81 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: -2.04 Total: -38.51 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.56 Total: -37.87 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -2.32 Total: -56.21 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 16 Polarization: 58.91 SS G_CDS: -0.53 Total: 58.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.53 -9.44 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601353778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.100 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds