Wall clock time and date at job start Tue Mar 31 2020 14:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47311 * 119.99826 * 2 1 3 5 5 C 1.53010 * 109.46756 * 60.00332 * 4 2 1 6 6 O 1.42898 * 109.47288 * 300.00356 * 4 2 1 7 7 C 1.52996 * 109.47238 * 179.97438 * 4 2 1 8 8 N 1.46509 * 109.47111 * 185.00090 * 7 4 2 9 9 S 1.65598 * 120.00050 * 164.28757 * 8 7 4 10 10 O 1.42102 * 106.40194 * 307.75687 * 9 8 7 11 11 O 1.42095 * 106.40514 * 174.83510 * 9 8 7 12 12 C 1.76196 * 107.21785 * 61.29306 * 9 8 7 13 13 C 1.37649 * 120.13061 * 244.37839 * 12 9 8 14 14 C 1.38602 * 120.24957 * 180.29593 * 13 12 9 15 15 C 1.38657 * 120.50097 * 359.45102 * 14 13 12 16 16 C 1.37601 * 120.25203 * 0.54981 * 15 14 13 17 17 C 1.40694 * 120.12771 * 64.40142 * 12 9 8 18 18 C 1.41400 * 120.24469 * 359.95907 * 17 12 9 19 19 H 1.07998 * 119.99546 * 331.83809 * 18 17 12 20 20 C 1.39939 * 119.99926 * 151.83835 * 18 17 12 21 21 N 1.30824 * 120.00389 * 347.97421 * 20 18 17 22 22 Si 1.86804 * 119.99854 * 167.97435 * 20 18 17 23 23 H 1.48497 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47015 * 120.00043 * 22 20 18 25 25 H 1.48496 * 109.47498 * 239.99936 * 22 20 18 26 26 H 1.08998 * 109.46687 * 299.99733 * 1 2 3 27 27 H 1.09002 * 109.46617 * 59.99756 * 1 2 3 28 28 H 1.08999 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47424 * 240.00158 * 2 1 3 30 30 H 1.09008 * 109.47425 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47356 * 299.99947 * 3 2 1 32 32 H 1.08998 * 109.47083 * 60.00509 * 3 2 1 33 33 H 1.08997 * 109.46775 * 180.02562 * 5 4 2 34 34 H 1.09003 * 109.46833 * 299.99609 * 5 4 2 35 35 H 1.08992 * 109.47122 * 59.99734 * 5 4 2 36 36 H 0.96698 * 113.99873 * 299.99403 * 6 4 2 37 37 H 1.08994 * 109.47274 * 65.00771 * 7 4 2 38 38 H 1.09003 * 109.47760 * 305.00245 * 7 4 2 39 39 H 0.96994 * 119.99943 * 344.29053 * 8 7 4 40 40 H 1.08002 * 119.86698 * 0.02696 * 13 12 9 41 41 H 1.07999 * 119.75259 * 179.70013 * 14 13 12 42 42 H 1.08000 * 119.87867 * 180.30362 * 15 14 13 43 43 H 1.07990 * 120.13190 * 179.74727 * 16 15 14 44 44 H 0.97000 * 120.00227 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5301 -2.1638 1.2492 6 8 1.5637 -0.0476 2.4160 7 6 3.5700 -0.7217 1.2489 8 7 4.0583 -1.5140 2.3804 9 16 5.6357 -2.0165 2.4199 10 8 5.8801 -2.6690 1.1814 11 8 5.8253 -2.6450 3.6801 12 6 6.6435 -0.5712 2.4281 13 6 7.4844 -0.3092 1.3703 14 6 8.2827 0.8238 1.3771 15 6 8.2362 1.7112 2.4414 16 6 7.4031 1.4695 3.5096 17 6 6.5922 0.3193 3.5162 18 6 5.7319 0.0607 4.6082 19 1 4.8237 -0.5041 4.4581 20 6 6.0574 0.5366 5.8833 21 7 7.2538 1.0106 6.1190 22 14 4.7835 0.4951 7.2490 23 1 3.5190 -0.0842 6.7289 24 1 5.2860 -0.3400 8.3694 25 1 4.5331 1.8759 7.7345 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.8930 -2.6775 2.1394 34 1 0.4400 -2.1638 1.2492 35 1 1.8934 -2.6775 0.3592 36 1 1.8491 0.8739 2.4822 37 1 3.9337 0.3018 1.3383 38 1 3.9331 -1.1563 0.3175 39 1 3.4577 -1.7442 3.1064 40 1 7.5254 -0.9914 0.5340 41 1 8.9431 1.0191 0.5451 42 1 8.8590 2.5935 2.4340 43 1 7.3714 2.1599 4.3394 44 1 7.4792 1.3408 7.0027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601353778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:45 Heat of formation + Delta-G solvation = -146.440652 kcal Electronic energy + Delta-G solvation = -27553.013685 eV Core-core repulsion = 23788.440016 eV Total energy + Delta-G solvation = -3764.573668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27562 -39.37164 -38.01598 -36.66020 -35.73385 -35.38621 -34.71759 -32.03359 -31.35378 -30.94913 -28.66034 -27.35373 -26.36332 -23.44304 -23.29786 -22.91509 -20.83024 -20.09776 -19.49628 -18.51847 -18.21386 -17.57492 -17.15131 -16.72130 -16.33778 -15.99643 -15.78783 -15.51831 -15.12371 -14.95406 -14.83026 -14.47657 -13.94548 -13.69274 -13.49425 -13.33293 -13.25511 -13.05960 -12.99701 -12.96109 -12.93478 -12.84114 -12.80498 -12.70066 -12.65019 -12.46992 -12.11005 -12.03028 -11.66853 -11.64577 -11.34130 -11.19749 -11.11368 -10.68169 -10.18240 -9.83453 -9.42923 -8.79882 -6.60689 -0.15118 0.53318 0.97075 1.36907 1.49081 1.52257 2.15995 2.35302 2.63269 2.99010 3.38656 3.48412 3.67412 3.80959 3.91658 3.95609 4.21788 4.33887 4.45892 4.49011 4.51180 4.66116 4.71885 4.76876 4.86129 4.91809 4.96438 4.99226 5.06485 5.09257 5.12737 5.16216 5.22324 5.30816 5.38056 5.52582 5.52867 5.54344 5.71434 5.83544 6.01295 6.09189 6.22056 6.48836 6.68600 6.84033 6.86513 8.16202 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.005688 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.286830 B = 4921.119704 C = 5694.945782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C -0.160 4.160 4 C 0.137 3.863 5 C -0.146 4.146 6 O -0.562 6.562 7 C 0.091 3.909 8 N -1.103 6.103 9 S 2.718 3.282 10 O -1.009 7.009 11 O -1.003 7.003 12 C -0.791 4.791 13 C -0.017 4.017 14 C -0.250 4.250 15 C -0.075 4.075 16 C -0.185 4.185 17 C 0.163 3.837 18 C -0.471 4.471 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.807 5.807 22 Si 0.974 3.026 23 H -0.249 1.249 24 H -0.270 1.270 25 H -0.254 1.254 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.383 0.617 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.419 0.581 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 2.570 -8.336 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.217 4.217 4 C 0.095 3.905 5 C -0.203 4.203 6 O -0.370 6.370 7 C -0.035 4.035 8 N -0.864 5.864 9 S 2.815 3.185 10 O -0.999 6.999 11 O -0.993 6.993 12 C -0.885 4.885 13 C -0.036 4.036 14 C -0.270 4.270 15 C -0.094 4.094 16 C -0.205 4.205 17 C 0.159 3.841 18 C -0.499 4.499 19 H 0.111 0.889 20 C -0.178 4.178 21 N -0.432 5.432 22 Si 0.794 3.206 23 H -0.172 1.172 24 H -0.195 1.195 25 H -0.178 1.178 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.233 0.767 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.255 0.745 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.496 1.230 -8.181 14.163 hybrid contribution 0.401 1.191 1.012 1.614 sum -11.095 2.421 -7.169 13.429 Atomic orbital electron populations 1.21762 0.93511 1.02264 1.02050 1.21712 0.97593 0.96865 0.97368 1.21979 1.01155 0.95597 1.02966 1.21360 0.89272 0.93828 0.86078 1.21861 1.02416 0.93189 1.02847 1.86503 1.76521 1.29960 1.44060 1.22144 0.97059 0.95806 0.88504 1.55179 1.28156 1.70944 1.32123 1.00369 0.72838 0.73739 0.71550 1.93418 1.85682 1.74245 1.46603 1.93485 1.85508 1.76051 1.44288 1.30121 1.25729 1.24518 1.08174 1.20572 0.92422 0.95800 0.94837 1.20879 1.06482 0.98433 1.01179 1.21245 0.96436 0.98299 0.93419 1.21571 1.01420 0.98824 0.98693 1.17295 0.89039 0.88536 0.89238 1.20177 1.07249 1.29607 0.92894 0.88862 1.26773 0.97424 0.91243 1.02371 1.69824 1.19942 1.28423 1.24969 0.85259 0.78966 0.79573 0.76833 1.17234 1.19548 1.17772 0.92642 0.91766 0.92180 0.89505 0.92799 0.91048 0.91980 0.92823 0.90370 0.90165 0.76702 0.91353 0.89891 0.74461 0.86045 0.85521 0.86024 0.86791 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.69 71.98 0.63 -1.56 16 2 C -0.12 -2.08 2.34 -10.79 -0.03 -2.10 16 3 C -0.16 -2.76 8.54 71.98 0.61 -2.14 16 4 C 0.14 3.12 0.50 -10.79 -0.01 3.12 16 5 C -0.15 -3.22 8.26 71.99 0.59 -2.63 16 6 O -0.56 -13.76 12.06 -148.98 -1.80 -15.56 16 7 C 0.09 2.60 4.81 86.38 0.42 3.02 16 8 N -1.10 -38.29 4.42 -187.48 -0.83 -39.12 16 9 S 2.72 119.32 4.94 -56.49 -0.28 119.04 16 10 O -1.01 -45.25 16.56 -128.00 -2.12 -47.36 16 11 O -1.00 -51.29 16.62 -128.00 -2.13 -53.41 16 12 C -0.79 -37.58 5.86 22.73 0.13 -37.45 16 13 C -0.02 -0.73 9.53 22.22 0.21 -0.52 16 14 C -0.25 -10.34 10.05 22.46 0.23 -10.11 16 15 C -0.08 -3.25 10.02 22.22 0.22 -3.03 16 16 C -0.19 -9.12 8.66 22.73 0.20 -8.92 16 17 C 0.16 8.32 5.55 -21.29 -0.12 8.21 16 18 C -0.47 -23.79 7.67 23.46 0.18 -23.61 16 19 H 0.09 4.45 5.77 -2.91 -0.02 4.43 16 20 C 0.04 1.93 5.23 85.26 0.45 2.37 16 21 N -0.81 -40.25 10.87 21.82 0.24 -40.01 16 22 Si 0.97 36.97 29.58 68.60 2.03 39.00 16 23 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 24 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 26 H 0.05 0.95 7.68 -2.39 -0.02 0.93 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.91 6.43 -2.39 -0.02 0.90 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.05 6.54 -2.38 -0.02 1.03 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.01 6.78 -2.39 -0.02 1.00 16 33 H 0.05 1.32 6.91 -2.39 -0.02 1.30 16 34 H 0.08 1.50 6.43 -2.39 -0.02 1.49 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.38 8.00 7.33 -74.06 -0.54 7.45 16 37 H 0.07 1.97 6.71 -2.39 -0.02 1.96 16 38 H 0.08 2.30 7.83 -2.39 -0.02 2.28 16 39 H 0.42 13.88 7.45 -96.75 -0.72 13.16 16 40 H 0.12 4.90 7.33 -2.91 -0.02 4.88 16 41 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 42 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 43 H 0.11 5.75 6.22 -2.92 -0.02 5.74 16 44 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 Total: -1.00 -65.04 358.50 -1.39 -66.43 By element: Atomic # 1 Polarization: 46.57 SS G_CDS: -0.23 Total: 46.35 kcal Atomic # 6 Polarization: -79.07 SS G_CDS: 3.72 Total: -75.35 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -0.59 Total: -79.13 kcal Atomic # 8 Polarization: -110.29 SS G_CDS: -6.04 Total: -116.34 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 119.32 SS G_CDS: -0.28 Total: 119.04 kcal Total: -65.04 -1.39 -66.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601353778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.012 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds