Wall clock time and date at job start Tue Mar 31 2020 15:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99812 * 2 1 4 4 C 1.53001 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46724 * 175.75346 * 4 3 2 6 6 N 1.46497 * 109.47029 * 295.75007 * 4 3 2 7 7 S 1.65597 * 120.00207 * 239.53264 * 6 4 3 8 8 O 1.42102 * 106.40383 * 310.86086 * 7 6 4 9 9 O 1.42098 * 106.40366 * 177.94051 * 7 6 4 10 10 C 1.76193 * 107.21774 * 64.39936 * 7 6 4 11 11 C 1.37641 * 120.13189 * 244.15397 * 10 7 6 12 12 C 1.38614 * 120.24841 * 180.32253 * 11 10 7 13 13 C 1.38655 * 120.50148 * 359.66462 * 12 11 10 14 14 C 1.37597 * 120.25255 * 0.02562 * 13 12 11 15 15 C 1.40703 * 120.12727 * 63.84642 * 10 7 6 16 16 C 1.41398 * 120.24244 * 359.97438 * 15 10 7 17 17 H 1.07996 * 119.99844 * 29.96999 * 16 15 10 18 18 C 1.39949 * 119.99782 * 209.96751 * 16 15 10 19 19 N 1.30822 * 119.99442 * 193.44627 * 18 16 15 20 20 Si 1.86800 * 120.00114 * 13.45271 * 18 16 15 21 21 H 1.48505 * 109.46716 * 267.04375 * 20 18 16 22 22 H 1.48491 * 109.47196 * 27.04252 * 20 18 16 23 23 H 1.48497 * 109.47247 * 147.04769 * 20 18 16 24 24 C 1.52997 * 109.46976 * 55.75667 * 4 3 2 25 25 C 1.52995 * 109.47420 * 63.79590 * 24 4 3 26 26 C 1.53006 * 109.46699 * 183.79531 * 24 4 3 27 27 H 1.08994 * 109.47048 * 300.00181 * 1 2 3 28 28 H 1.09001 * 109.47318 * 60.00171 * 1 2 3 29 29 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47530 * 59.99576 * 3 2 1 31 31 H 1.09000 * 109.46787 * 300.00129 * 3 2 1 32 32 H 0.97005 * 119.99904 * 59.53906 * 6 4 3 33 33 H 1.08001 * 119.87237 * 0.02562 * 11 10 7 34 34 H 1.08002 * 119.74698 * 179.69035 * 12 11 10 35 35 H 1.08007 * 119.87488 * 180.02562 * 13 12 11 36 36 H 1.07994 * 120.13267 * 180.02562 * 14 13 12 37 37 H 0.97001 * 119.99446 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.47002 * 303.79212 * 24 4 3 39 39 H 1.09004 * 109.47151 * 62.83144 * 25 24 4 40 40 H 1.09005 * 109.47215 * 182.83177 * 25 24 4 41 41 H 1.08998 * 109.47112 * 302.82846 * 25 24 4 42 42 H 1.09003 * 109.46971 * 64.09087 * 26 24 4 43 43 H 1.09001 * 109.46853 * 184.08512 * 26 24 4 44 44 H 1.08992 * 109.47051 * 304.08650 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1777 -0.0755 6 7 3.9743 0.5482 1.2450 7 16 5.0019 1.3492 2.2671 8 8 6.0704 1.8324 1.4645 9 8 5.1957 0.4987 3.3889 10 6 4.1445 2.7690 2.8614 11 6 4.5986 4.0307 2.5507 12 6 3.9298 5.1494 3.0225 13 6 2.7938 5.0120 3.8056 14 6 2.3182 3.7605 4.1235 15 6 2.9892 2.6176 3.6501 16 6 2.5094 1.3265 3.9699 17 1 3.1996 0.5007 4.0588 18 6 1.1401 1.1190 4.1712 19 7 0.7206 0.0070 4.7179 20 14 -0.0885 2.4296 3.6590 21 1 -0.3709 3.3211 4.8126 22 1 0.4769 3.2288 2.5426 23 1 -1.3482 1.7807 3.2149 24 6 3.9802 0.3351 -1.1915 25 6 3.6053 1.0465 -2.4930 26 6 5.4962 0.1353 -1.1379 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8465 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.6631 -0.3425 1.4701 33 1 5.4821 4.1494 1.9410 34 1 4.2960 6.1355 2.7779 35 1 2.2803 5.8905 4.1675 36 1 1.4330 3.6558 4.7332 37 1 -0.2285 -0.1367 4.8578 38 1 3.4843 -0.6348 -1.1515 39 1 4.1404 1.9940 -2.5564 40 1 3.8767 0.4185 -3.3416 41 1 2.5316 1.2338 -2.5084 42 1 5.7562 -0.4353 -0.2462 43 1 5.8226 -0.4079 -2.0248 44 1 5.9897 1.1065 -1.1045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601356227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:44 Heat of formation + Delta-G solvation = -115.380680 kcal Electronic energy + Delta-G solvation = -28300.941137 eV Core-core repulsion = 24537.714330 eV Total energy + Delta-G solvation = -3763.226807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.49540 -37.89279 -36.39117 -35.95761 -34.88676 -33.89503 -32.45264 -30.74583 -30.15639 -28.71727 -26.66294 -25.78752 -25.42790 -22.79093 -22.07957 -21.22536 -19.86031 -18.67915 -17.76770 -17.10361 -16.42434 -16.11309 -15.72145 -15.48955 -15.26701 -15.09355 -14.39040 -14.24702 -13.95071 -13.67192 -13.54425 -13.06415 -12.89078 -12.57551 -12.35852 -12.20496 -11.97923 -11.95170 -11.82556 -11.38282 -11.30680 -11.26592 -11.15387 -11.10906 -10.98579 -10.81207 -10.67605 -10.55320 -10.39089 -10.31326 -10.02103 -9.53676 -9.36242 -9.28141 -8.75418 -8.26391 -7.87344 -7.22817 -4.90462 1.50700 2.04631 2.48428 2.87058 2.94597 3.03607 3.68509 3.86778 4.09258 4.21424 4.68073 4.92446 5.05312 5.14771 5.27043 5.44884 5.45875 5.54882 5.58527 5.63329 5.69183 5.79741 5.80740 5.87547 5.88602 5.95139 6.10618 6.12349 6.16555 6.17688 6.31067 6.35228 6.40657 6.60249 6.67106 6.75800 6.92062 7.05639 7.21945 7.39397 7.43676 7.52364 7.75105 7.80499 8.14079 8.28636 8.49773 9.75697 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.007740 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.377485 B = 3616.559184 C = 4717.853929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.045 3.955 4 C 0.174 3.826 5 H 0.097 0.903 6 N -1.101 6.101 7 S 2.704 3.296 8 O -0.992 6.992 9 O -0.971 6.971 10 C -0.774 4.774 11 C 0.017 3.983 12 C -0.261 4.261 13 C -0.043 4.043 14 C -0.238 4.238 15 C 0.164 3.836 16 C -0.447 4.447 17 H 0.127 0.873 18 C 0.091 3.909 19 N -0.774 5.774 20 Si 0.904 3.096 21 H -0.267 1.267 22 H -0.240 1.240 23 H -0.287 1.287 24 C -0.101 4.101 25 C -0.146 4.146 26 C -0.146 4.146 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.419 0.581 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.291 0.709 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 1.869 -10.718 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.033 4.033 4 C 0.065 3.935 5 H 0.115 0.885 6 N -0.857 5.857 7 S 2.800 3.200 8 O -0.983 6.983 9 O -0.961 6.961 10 C -0.868 4.868 11 C -0.003 4.003 12 C -0.281 4.281 13 C -0.062 4.062 14 C -0.258 4.258 15 C 0.158 3.842 16 C -0.474 4.474 17 H 0.144 0.856 18 C -0.133 4.133 19 N -0.395 5.395 20 Si 0.731 3.269 21 H -0.193 1.193 22 H -0.163 1.163 23 H -0.214 1.214 24 C -0.122 4.122 25 C -0.204 4.204 26 C -0.204 4.204 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.254 0.746 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.979 1.343 -10.449 10.580 hybrid contribution -1.853 1.005 0.313 2.131 sum -2.832 2.348 -10.136 10.783 Atomic orbital electron populations 1.22681 0.81820 1.02344 0.99520 1.87835 1.18875 1.27480 1.95324 1.23081 0.94126 0.85297 1.00822 1.20685 0.91906 0.96687 0.84203 0.88541 1.55367 1.68182 1.29699 1.32427 1.01031 0.72732 0.73762 0.72479 1.93464 1.52421 1.82214 1.70165 1.93525 1.85199 1.66738 1.50674 1.29929 1.19066 1.14209 1.23577 1.20411 0.95449 0.91558 0.92844 1.20488 1.00978 0.96975 1.09673 1.20820 0.94814 0.96079 0.94478 1.21198 1.03794 0.93203 1.07590 1.17073 0.88497 0.92975 0.85617 1.20327 0.94382 0.95869 1.36787 0.85565 1.26201 0.99733 0.96158 0.91161 1.69658 1.18314 1.24596 1.26982 0.86491 0.78359 0.80598 0.81492 1.19348 1.16333 1.21414 1.21387 0.96813 1.00318 0.93636 1.21861 1.01266 1.00456 0.96808 1.21833 0.94953 1.02538 1.01045 0.94304 0.94690 0.89922 0.91739 0.92975 0.74604 0.86819 0.88152 0.88376 0.87800 0.89832 0.89789 0.92660 0.92711 0.92616 0.92705 0.93304 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.38 -5.97 9.67 -35.23 -0.34 -6.31 16 3 C 0.04 0.70 5.39 37.16 0.20 0.90 16 4 C 0.17 2.73 2.27 -67.93 -0.15 2.57 16 5 H 0.10 1.49 7.69 -51.93 -0.40 1.09 16 6 N -1.10 -19.92 4.32 -4.89 -0.02 -19.95 16 7 S 2.70 57.41 4.92 -107.50 -0.53 56.88 16 8 O -0.99 -21.03 16.08 -57.17 -0.92 -21.95 16 9 O -0.97 -23.95 15.77 -57.17 -0.90 -24.85 16 10 C -0.77 -17.41 5.92 -38.87 -0.23 -17.64 16 11 C 0.02 0.36 9.53 -39.66 -0.38 -0.02 16 12 C -0.26 -5.17 10.05 -39.29 -0.39 -5.56 16 13 C -0.04 -0.88 10.02 -39.66 -0.40 -1.28 16 14 C -0.24 -5.44 7.03 -38.87 -0.27 -5.71 16 15 C 0.16 3.93 5.14 -106.82 -0.55 3.39 16 16 C -0.45 -11.27 8.69 -37.74 -0.33 -11.60 16 17 H 0.13 3.45 5.71 -52.49 -0.30 3.15 16 18 C 0.09 2.19 5.46 -17.34 -0.09 2.09 16 19 N -0.77 -18.95 13.93 55.55 0.77 -18.18 16 20 Si 0.90 18.84 24.40 -169.99 -4.15 14.69 16 21 H -0.27 -5.49 6.66 56.52 0.38 -5.12 16 22 H -0.24 -4.98 6.69 56.52 0.38 -4.61 16 23 H -0.29 -5.66 7.11 56.52 0.40 -5.25 16 24 C -0.10 -1.37 2.55 -90.62 -0.23 -1.60 16 25 C -0.15 -1.63 8.99 37.16 0.33 -1.30 16 26 C -0.15 -2.04 8.62 37.16 0.32 -1.71 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.68 6.68 -51.93 -0.35 0.34 16 32 H 0.42 7.46 8.91 -34.47 -0.31 7.15 16 33 H 0.11 2.15 7.33 -52.49 -0.38 1.76 16 34 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.10 2.33 4.38 -52.49 -0.23 2.10 16 37 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 38 H 0.08 1.16 7.45 -51.93 -0.39 0.77 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.60 6.49 -51.93 -0.34 0.26 16 42 H 0.05 0.82 7.65 -51.93 -0.40 0.42 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -28.86 361.86 -8.19 -37.05 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.49 Total: 13.09 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: -1.06 Total: -35.91 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.75 Total: -38.13 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -2.16 Total: -53.12 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.15 Total: 14.69 kcal Atomic # 16 Polarization: 57.41 SS G_CDS: -0.53 Total: 56.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.86 -8.19 -37.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601356227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.334 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds