Wall clock time and date at job start Tue Mar 31 2020 15:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99812 * 2 1 4 4 C 1.53001 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46724 * 175.75346 * 4 3 2 6 6 N 1.46497 * 109.47029 * 295.75007 * 4 3 2 7 7 S 1.65597 * 120.00207 * 239.53264 * 6 4 3 8 8 O 1.42102 * 106.40383 * 310.86086 * 7 6 4 9 9 O 1.42098 * 106.40366 * 177.94051 * 7 6 4 10 10 C 1.76193 * 107.21774 * 64.39936 * 7 6 4 11 11 C 1.37641 * 120.13189 * 244.15397 * 10 7 6 12 12 C 1.38614 * 120.24841 * 180.32253 * 11 10 7 13 13 C 1.38655 * 120.50148 * 359.66462 * 12 11 10 14 14 C 1.37597 * 120.25255 * 0.02562 * 13 12 11 15 15 C 1.40703 * 120.12727 * 63.84642 * 10 7 6 16 16 C 1.41398 * 120.24244 * 359.97438 * 15 10 7 17 17 H 1.07996 * 119.99844 * 29.96999 * 16 15 10 18 18 C 1.39949 * 119.99782 * 209.96751 * 16 15 10 19 19 N 1.30822 * 119.99442 * 193.44627 * 18 16 15 20 20 Si 1.86800 * 120.00114 * 13.45271 * 18 16 15 21 21 H 1.48505 * 109.46716 * 267.04375 * 20 18 16 22 22 H 1.48491 * 109.47196 * 27.04252 * 20 18 16 23 23 H 1.48497 * 109.47247 * 147.04769 * 20 18 16 24 24 C 1.52997 * 109.46976 * 55.75667 * 4 3 2 25 25 C 1.52995 * 109.47420 * 63.79590 * 24 4 3 26 26 C 1.53006 * 109.46699 * 183.79531 * 24 4 3 27 27 H 1.08994 * 109.47048 * 300.00181 * 1 2 3 28 28 H 1.09001 * 109.47318 * 60.00171 * 1 2 3 29 29 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47530 * 59.99576 * 3 2 1 31 31 H 1.09000 * 109.46787 * 300.00129 * 3 2 1 32 32 H 0.97005 * 119.99904 * 59.53906 * 6 4 3 33 33 H 1.08001 * 119.87237 * 0.02562 * 11 10 7 34 34 H 1.08002 * 119.74698 * 179.69035 * 12 11 10 35 35 H 1.08007 * 119.87488 * 180.02562 * 13 12 11 36 36 H 1.07994 * 120.13267 * 180.02562 * 14 13 12 37 37 H 0.97001 * 119.99446 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.47002 * 303.79212 * 24 4 3 39 39 H 1.09004 * 109.47151 * 62.83144 * 25 24 4 40 40 H 1.09005 * 109.47215 * 182.83177 * 25 24 4 41 41 H 1.08998 * 109.47112 * 302.82846 * 25 24 4 42 42 H 1.09003 * 109.46971 * 64.09087 * 26 24 4 43 43 H 1.09001 * 109.46853 * 184.08512 * 26 24 4 44 44 H 1.08992 * 109.47051 * 304.08650 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1777 -0.0755 6 7 3.9743 0.5482 1.2450 7 16 5.0019 1.3492 2.2671 8 8 6.0704 1.8324 1.4645 9 8 5.1957 0.4987 3.3889 10 6 4.1445 2.7690 2.8614 11 6 4.5986 4.0307 2.5507 12 6 3.9298 5.1494 3.0225 13 6 2.7938 5.0120 3.8056 14 6 2.3182 3.7605 4.1235 15 6 2.9892 2.6176 3.6501 16 6 2.5094 1.3265 3.9699 17 1 3.1996 0.5007 4.0588 18 6 1.1401 1.1190 4.1712 19 7 0.7206 0.0070 4.7179 20 14 -0.0885 2.4296 3.6590 21 1 -0.3709 3.3211 4.8126 22 1 0.4769 3.2288 2.5426 23 1 -1.3482 1.7807 3.2149 24 6 3.9802 0.3351 -1.1915 25 6 3.6053 1.0465 -2.4930 26 6 5.4962 0.1353 -1.1379 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8465 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.6631 -0.3425 1.4701 33 1 5.4821 4.1494 1.9410 34 1 4.2960 6.1355 2.7779 35 1 2.2803 5.8905 4.1675 36 1 1.4330 3.6558 4.7332 37 1 -0.2285 -0.1367 4.8578 38 1 3.4843 -0.6348 -1.1515 39 1 4.1404 1.9940 -2.5564 40 1 3.8767 0.4185 -3.3416 41 1 2.5316 1.2338 -2.5084 42 1 5.7562 -0.4353 -0.2462 43 1 5.8226 -0.4079 -2.0248 44 1 5.9897 1.1065 -1.1045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601356227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:43 Heat of formation + Delta-G solvation = -135.473123 kcal Electronic energy + Delta-G solvation = -28301.812411 eV Core-core repulsion = 24537.714330 eV Total energy + Delta-G solvation = -3764.098081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.75536 -39.54881 -38.07421 -37.23643 -36.67768 -35.65445 -33.73097 -32.47530 -31.83497 -29.94148 -27.67319 -27.20316 -26.90145 -24.02564 -23.72275 -22.94897 -21.04716 -20.28687 -19.55312 -18.70740 -18.04296 -17.48888 -17.15818 -16.96009 -16.63015 -16.30495 -15.90773 -15.87047 -15.50762 -15.22997 -14.93466 -14.60522 -14.17466 -14.08153 -13.71353 -13.60319 -13.50495 -13.12389 -13.04539 -13.01665 -12.94033 -12.82303 -12.73949 -12.53033 -12.40615 -12.30238 -12.12685 -11.94115 -11.73015 -11.65951 -11.44214 -11.25807 -11.02566 -10.48576 -10.18254 -9.92566 -9.59921 -9.00227 -6.74251 -0.16285 0.34134 0.77587 1.18412 1.29645 1.38912 2.00281 2.30612 2.49218 2.88586 2.99627 3.34426 3.74419 3.80010 4.01061 4.16694 4.21397 4.30003 4.33436 4.38555 4.46419 4.52860 4.61481 4.62660 4.67741 4.69872 4.83496 4.89791 4.92972 4.99939 5.03899 5.15263 5.19693 5.22843 5.33099 5.37653 5.55111 5.56749 5.65262 5.69119 5.83049 6.07351 6.22327 6.28298 6.32529 6.52189 6.68010 8.04374 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.007740 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.377485 B = 3616.559184 C = 4717.853929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.391 6.391 3 C 0.047 3.953 4 C 0.164 3.836 5 H 0.099 0.901 6 N -1.094 6.094 7 S 2.716 3.284 8 O -0.993 6.993 9 O -1.013 7.013 10 C -0.784 4.784 11 C 0.004 3.996 12 C -0.247 4.247 13 C -0.039 4.039 14 C -0.263 4.263 15 C 0.152 3.848 16 C -0.478 4.478 17 H 0.091 0.909 18 C 0.062 3.938 19 N -0.815 5.815 20 Si 0.949 3.051 21 H -0.261 1.261 22 H -0.239 1.239 23 H -0.272 1.272 24 C -0.095 4.095 25 C -0.142 4.142 26 C -0.148 4.148 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.419 0.581 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.299 0.701 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 4.380 -13.000 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.310 6.310 3 C -0.031 4.031 4 C 0.057 3.943 5 H 0.117 0.883 6 N -0.852 5.852 7 S 2.812 3.188 8 O -0.984 6.984 9 O -1.004 7.004 10 C -0.878 4.878 11 C -0.015 4.015 12 C -0.267 4.267 13 C -0.057 4.057 14 C -0.283 4.283 15 C 0.147 3.853 16 C -0.505 4.505 17 H 0.109 0.891 18 C -0.157 4.157 19 N -0.439 5.439 20 Si 0.772 3.228 21 H -0.187 1.187 22 H -0.162 1.162 23 H -0.198 1.198 24 C -0.115 4.115 25 C -0.200 4.200 26 C -0.205 4.205 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.253 0.747 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.585 3.861 -12.732 13.399 hybrid contribution -1.523 0.324 0.960 1.829 sum -3.108 4.184 -11.772 12.874 Atomic orbital electron populations 1.22846 0.80716 1.03444 0.99904 1.87815 1.20172 1.27646 1.95404 1.23051 0.93848 0.85330 1.00885 1.21008 0.92344 0.97152 0.83788 0.88271 1.55130 1.67871 1.29342 1.32831 1.00501 0.72951 0.73334 0.71992 1.93449 1.52795 1.82243 1.69871 1.93469 1.86095 1.67869 1.52929 1.30157 1.18559 1.15532 1.23535 1.20781 0.96307 0.91237 0.93212 1.21008 0.99848 0.98370 1.07466 1.21283 0.94714 0.96381 0.93363 1.21350 1.04437 0.93908 1.08586 1.17227 0.89213 0.93044 0.85786 1.20151 0.94724 0.95698 1.39946 0.89110 1.26777 1.00592 0.97696 0.90681 1.69684 1.19178 1.26186 1.28813 0.85793 0.76989 0.78724 0.81261 1.18681 1.16235 1.19845 1.21344 0.96302 1.00029 0.93840 1.21846 1.01813 1.00734 0.95609 1.21851 0.95330 1.02034 1.01299 0.96207 0.91888 0.88624 0.94573 0.89858 0.74659 0.84893 0.84210 0.84520 0.87839 0.88999 0.90129 0.92052 0.91086 0.91893 0.94576 0.90999 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.39 -12.17 9.67 -148.98 -1.44 -13.61 16 3 C 0.05 1.42 5.39 71.98 0.39 1.81 16 4 C 0.16 5.06 2.27 44.99 0.10 5.17 16 5 H 0.10 2.96 7.69 -2.39 -0.02 2.95 16 6 N -1.09 -40.79 4.32 -169.40 -0.73 -41.52 16 7 S 2.72 118.48 4.92 -56.49 -0.28 118.20 16 8 O -0.99 -42.11 16.08 -128.00 -2.06 -44.17 16 9 O -1.01 -52.83 15.77 -128.00 -2.02 -54.85 16 10 C -0.78 -35.29 5.92 22.73 0.13 -35.15 16 11 C 0.00 0.17 9.53 22.22 0.21 0.38 16 12 C -0.25 -8.81 10.05 22.46 0.23 -8.59 16 13 C -0.04 -1.46 10.02 22.22 0.22 -1.24 16 14 C -0.26 -11.70 7.03 22.73 0.16 -11.54 16 15 C 0.15 7.40 5.14 -21.29 -0.11 7.29 16 16 C -0.48 -25.23 8.69 23.46 0.20 -25.03 16 17 H 0.09 5.35 5.71 -2.91 -0.02 5.33 16 18 C 0.06 3.09 5.46 85.26 0.47 3.56 16 19 N -0.82 -41.73 13.93 21.83 0.30 -41.43 16 20 Si 0.95 38.70 24.40 68.60 1.67 40.38 16 21 H -0.26 -10.26 6.66 99.48 0.66 -9.59 16 22 H -0.24 -9.59 6.69 99.48 0.67 -8.93 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 24 C -0.09 -2.42 2.55 -10.79 -0.03 -2.45 16 25 C -0.14 -2.75 8.99 71.98 0.65 -2.11 16 26 C -0.15 -3.95 8.62 71.98 0.62 -3.33 16 27 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.97 6.68 -2.39 -0.02 1.96 16 32 H 0.42 15.81 8.91 -96.74 -0.86 14.95 16 33 H 0.13 4.67 7.33 -2.91 -0.02 4.65 16 34 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.10 4.54 4.38 -2.91 -0.01 4.53 16 37 H 0.30 13.61 8.30 -92.71 -0.77 12.85 16 38 H 0.08 2.13 7.45 -2.39 -0.02 2.11 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.06 1.13 6.49 -2.39 -0.02 1.12 16 42 H 0.04 1.08 7.65 -2.39 -0.02 1.06 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 1.58 7.94 -2.39 -0.02 1.56 16 Total: -1.00 -64.30 361.86 0.01 -64.28 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: 0.07 Total: 41.97 kcal Atomic # 6 Polarization: -73.76 SS G_CDS: 4.49 Total: -69.26 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -0.43 Total: -82.95 kcal Atomic # 8 Polarization: -107.11 SS G_CDS: -5.52 Total: -112.63 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.67 Total: 40.38 kcal Atomic # 16 Polarization: 118.48 SS G_CDS: -0.28 Total: 118.20 kcal Total: -64.30 0.01 -64.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601356227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.188 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds