Wall clock time and date at job start Tue Mar 31 2020 15:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00147 * 2 1 4 4 C 1.53000 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46974 * 182.06235 * 4 3 2 6 6 N 1.46501 * 109.47363 * 62.05936 * 4 3 2 7 7 S 1.65601 * 119.99933 * 141.39023 * 6 4 3 8 8 O 1.42098 * 106.40331 * 308.85308 * 7 6 4 9 9 O 1.42099 * 106.40177 * 175.93354 * 7 6 4 10 10 C 1.76200 * 107.21984 * 62.39416 * 7 6 4 11 11 C 1.37642 * 120.12883 * 246.28182 * 10 7 6 12 12 C 1.38610 * 120.24879 * 180.32017 * 11 10 7 13 13 C 1.38658 * 120.49825 * 359.66575 * 12 11 10 14 14 C 1.37596 * 120.25075 * 0.02562 * 13 12 11 15 15 C 1.40693 * 120.12783 * 65.96573 * 10 7 6 16 16 C 1.41398 * 120.24671 * 359.97438 * 15 10 7 17 17 H 1.08008 * 119.99441 * 329.67530 * 16 15 10 18 18 C 1.39938 * 120.00555 * 149.67846 * 16 15 10 19 19 N 1.30828 * 119.99781 * 336.78551 * 18 16 15 20 20 Si 1.86801 * 120.00107 * 156.78458 * 18 16 15 21 21 H 1.48506 * 109.47115 * 270.00012 * 20 18 16 22 22 H 1.48498 * 109.47294 * 29.99956 * 20 18 16 23 23 H 1.48503 * 109.47158 * 150.00392 * 20 18 16 24 24 C 1.53007 * 109.46889 * 302.05992 * 4 3 2 25 25 C 1.53003 * 109.46807 * 301.13069 * 24 4 3 26 26 C 1.53001 * 109.47016 * 61.13088 * 24 4 3 27 27 H 1.09002 * 109.46868 * 299.99398 * 1 2 3 28 28 H 1.08995 * 109.47232 * 59.99848 * 1 2 3 29 29 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47194 * 59.99770 * 3 2 1 31 31 H 1.09001 * 109.46794 * 300.00026 * 3 2 1 32 32 H 0.96997 * 119.99807 * 321.39129 * 6 4 3 33 33 H 1.07996 * 119.87443 * 0.02562 * 11 10 7 34 34 H 1.07996 * 119.74942 * 179.68863 * 12 11 10 35 35 H 1.08006 * 119.87196 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.12637 * 180.02562 * 14 13 12 37 37 H 0.96996 * 120.00279 * 353.36257 * 19 18 16 38 38 H 1.09004 * 109.46911 * 181.12982 * 24 4 3 39 39 H 1.09000 * 109.47136 * 299.99724 * 25 24 4 40 40 H 1.08990 * 109.47378 * 60.00172 * 25 24 4 41 41 H 1.09001 * 109.46560 * 180.02562 * 25 24 4 42 42 H 1.08993 * 109.47318 * 42.99904 * 26 24 4 43 43 H 1.09000 * 109.46650 * 163.00339 * 26 24 4 44 44 H 1.08999 * 109.46784 * 282.99839 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9788 2.1797 0.0363 6 7 3.9707 0.5011 -1.2211 7 16 5.3462 0.9940 -2.0005 8 8 5.2231 2.3979 -2.1825 9 8 5.5461 0.0856 -3.0748 10 6 6.6911 0.7526 -0.8880 11 6 7.3807 1.8358 -0.3923 12 6 8.4433 1.6484 0.4778 13 6 8.8195 0.3710 0.8642 14 6 8.1405 -0.7261 0.3862 15 6 7.0600 -0.5478 -0.4978 16 6 6.3543 -1.6678 -0.9948 17 1 5.3071 -1.5792 -1.2436 18 6 7.0127 -2.8909 -1.1642 19 7 8.3125 -2.9194 -1.3107 20 14 6.0358 -4.4830 -1.1813 21 1 5.9309 -5.0143 0.2016 22 1 4.6751 -4.2232 -1.7162 23 1 6.7248 -5.4774 -2.0425 24 6 3.9838 0.3807 1.2216 25 6 3.5049 1.0799 2.4955 26 6 3.3842 -1.0253 1.1553 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.4532 -0.2402 -1.5727 33 1 7.0958 2.8352 -0.6862 34 1 8.9819 2.5038 0.8579 35 1 9.6488 0.2367 1.5430 36 1 8.4350 -1.7201 0.6888 37 1 8.8089 -2.0907 -1.3985 38 1 5.0717 0.3118 1.2320 39 1 3.9321 2.0816 2.5427 40 1 2.4172 1.1489 2.4851 41 1 3.8248 0.5075 3.3662 42 1 3.4667 -1.4079 0.1380 43 1 3.9247 -1.6832 1.8359 44 1 2.3341 -0.9865 1.4448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601356228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:48 Heat of formation + Delta-G solvation = -117.065925 kcal Electronic energy + Delta-G solvation = -28228.144667 eV Core-core repulsion = 24464.844782 eV Total energy + Delta-G solvation = -3763.299885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.87593 -37.80855 -36.29124 -35.95190 -34.84847 -34.04284 -32.39807 -30.18853 -29.47348 -28.53709 -26.87016 -25.86432 -25.32197 -23.15941 -21.78954 -21.19428 -19.36366 -18.71616 -18.22596 -17.02734 -16.67343 -16.26375 -16.04733 -15.33659 -14.91675 -14.66091 -14.19538 -14.10214 -13.96376 -13.73905 -13.36306 -13.29241 -12.70450 -12.45957 -12.31346 -12.16243 -11.79087 -11.74339 -11.56991 -11.46916 -11.21861 -11.17487 -11.12435 -11.02803 -10.95311 -10.72087 -10.54491 -10.47092 -10.41729 -10.03583 -9.79902 -9.50740 -9.36047 -9.21432 -8.73457 -8.18526 -7.78611 -7.41880 -4.78595 1.52623 2.24651 2.67092 3.10620 3.20699 3.29572 3.75431 3.90911 3.98090 4.37695 4.71690 4.96221 5.04536 5.17333 5.26112 5.29403 5.37955 5.46291 5.52784 5.59617 5.61246 5.64266 5.72506 5.93336 6.00017 6.07892 6.19205 6.26947 6.31056 6.36046 6.47281 6.64563 6.67744 6.88363 6.91375 7.00287 7.16324 7.20369 7.31245 7.40084 7.56366 7.64712 7.68718 7.85685 8.01055 8.38662 8.61243 9.83916 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.006862 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.836520 B = 4079.166487 C = 4978.095366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.055 3.945 4 C 0.167 3.833 5 H 0.096 0.904 6 N -1.111 6.111 7 S 2.698 3.302 8 O -1.002 7.002 9 O -0.965 6.965 10 C -0.777 4.777 11 C 0.011 3.989 12 C -0.263 4.263 13 C -0.057 4.057 14 C -0.207 4.207 15 C 0.169 3.831 16 C -0.491 4.491 17 H 0.090 0.910 18 C 0.044 3.956 19 N -0.776 5.776 20 Si 1.064 2.936 21 H -0.272 1.272 22 H -0.269 1.269 23 H -0.274 1.274 24 C -0.112 4.112 25 C -0.144 4.144 26 C -0.132 4.132 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.416 0.584 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.303 0.697 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 3.423 5.755 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.288 6.288 3 C -0.023 4.023 4 C 0.059 3.941 5 H 0.114 0.886 6 N -0.867 5.867 7 S 2.796 3.204 8 O -0.992 6.992 9 O -0.955 6.955 10 C -0.872 4.872 11 C -0.009 4.009 12 C -0.283 4.283 13 C -0.076 4.076 14 C -0.227 4.227 15 C 0.163 3.837 16 C -0.517 4.517 17 H 0.108 0.892 18 C -0.180 4.180 19 N -0.398 5.398 20 Si 0.886 3.114 21 H -0.197 1.197 22 H -0.193 1.193 23 H -0.199 1.199 24 C -0.132 4.132 25 C -0.202 4.202 26 C -0.189 4.189 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.251 0.749 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.050 2.109 4.826 12.241 hybrid contribution 0.010 1.494 0.725 1.660 sum -11.040 3.603 5.551 12.871 Atomic orbital electron populations 1.22721 0.82339 1.02463 0.99542 1.88156 1.18526 1.27084 1.95047 1.22876 0.93660 0.85313 1.00443 1.20771 0.92376 0.95976 0.84999 0.88633 1.55652 1.44135 1.48214 1.38734 1.01118 0.73046 0.72356 0.73918 1.93444 1.86971 1.32765 1.86028 1.93545 1.85116 1.64721 1.52136 1.29818 1.26695 1.00001 1.30731 1.20310 0.92665 0.96024 0.91859 1.20419 1.03587 0.95904 1.08436 1.20816 0.96705 0.93316 0.96719 1.21308 1.01271 0.97465 1.02654 1.16944 0.89589 0.89967 0.87155 1.20912 0.99635 0.95494 1.35708 0.89241 1.27071 0.95906 1.03980 0.91057 1.70405 1.08130 1.35384 1.25864 0.83651 0.75872 0.73529 0.78303 1.19741 1.19341 1.19864 1.21572 1.02161 0.96420 0.93064 1.21872 1.00545 1.00114 0.97684 1.21800 1.00072 0.94746 1.02302 0.94482 0.94434 0.89871 0.92193 0.92905 0.74947 0.87451 0.88677 0.88781 0.87358 0.88342 0.89508 0.93095 0.92919 0.92698 0.91899 0.94122 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.60 6.43 -35.23 -0.23 -4.82 16 3 C 0.06 0.68 5.29 37.16 0.20 0.88 16 4 C 0.17 2.53 2.65 -67.93 -0.18 2.35 16 5 H 0.10 1.45 7.57 -51.93 -0.39 1.06 16 6 N -1.11 -19.60 3.92 -4.89 -0.02 -19.62 16 7 S 2.70 58.66 4.92 -107.50 -0.53 58.13 16 8 O -1.00 -22.59 16.43 -57.17 -0.94 -23.53 16 9 O -0.96 -24.16 16.52 -57.17 -0.94 -25.11 16 10 C -0.78 -17.94 5.12 -38.87 -0.20 -18.14 16 11 C 0.01 0.25 9.54 -39.66 -0.38 -0.13 16 12 C -0.26 -5.55 10.05 -39.29 -0.39 -5.94 16 13 C -0.06 -1.22 10.02 -39.66 -0.40 -1.62 16 14 C -0.21 -4.90 7.96 -38.87 -0.31 -5.21 16 15 C 0.17 4.10 4.75 -106.83 -0.51 3.59 16 16 C -0.49 -11.99 7.49 -37.74 -0.28 -12.28 16 17 H 0.09 2.09 5.68 -52.48 -0.30 1.79 16 18 C 0.04 1.08 4.96 -17.34 -0.09 0.99 16 19 N -0.78 -19.79 12.43 55.55 0.69 -19.10 16 20 Si 1.06 20.95 29.99 -169.99 -5.10 15.85 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 C -0.11 -1.73 2.95 -90.61 -0.27 -1.99 16 25 C -0.14 -1.81 8.74 37.16 0.32 -1.49 16 26 C -0.13 -2.04 7.84 37.16 0.29 -1.75 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.62 6.52 -51.93 -0.34 0.28 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.42 6.96 7.59 -34.47 -0.26 6.70 16 33 H 0.11 2.19 7.32 -52.49 -0.38 1.81 16 34 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.11 2.61 6.77 -52.49 -0.36 2.26 16 37 H 0.30 7.97 6.77 -40.82 -0.28 7.69 16 38 H 0.09 1.60 6.87 -51.93 -0.36 1.24 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.58 6.45 -51.93 -0.33 0.24 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.06 6.17 -51.93 -0.32 0.73 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.90 6.04 -51.93 -0.31 0.59 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -29.53 357.17 -8.99 -38.53 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.23 Total: 13.68 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: -1.08 Total: -39.39 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.67 Total: -38.73 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -2.11 Total: -53.46 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.10 Total: 15.85 kcal Atomic # 16 Polarization: 58.66 SS G_CDS: -0.53 Total: 58.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.53 -8.99 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601356228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.539 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds