Wall clock time and date at job start Tue Mar 31 2020 15:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00147 * 2 1 4 4 C 1.53000 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46974 * 182.06235 * 4 3 2 6 6 N 1.46501 * 109.47363 * 62.05936 * 4 3 2 7 7 S 1.65601 * 119.99933 * 141.39023 * 6 4 3 8 8 O 1.42098 * 106.40331 * 308.85308 * 7 6 4 9 9 O 1.42099 * 106.40177 * 175.93354 * 7 6 4 10 10 C 1.76200 * 107.21984 * 62.39416 * 7 6 4 11 11 C 1.37642 * 120.12883 * 246.28182 * 10 7 6 12 12 C 1.38610 * 120.24879 * 180.32017 * 11 10 7 13 13 C 1.38658 * 120.49825 * 359.66575 * 12 11 10 14 14 C 1.37596 * 120.25075 * 0.02562 * 13 12 11 15 15 C 1.40693 * 120.12783 * 65.96573 * 10 7 6 16 16 C 1.41398 * 120.24671 * 359.97438 * 15 10 7 17 17 H 1.08008 * 119.99441 * 329.67530 * 16 15 10 18 18 C 1.39938 * 120.00555 * 149.67846 * 16 15 10 19 19 N 1.30828 * 119.99781 * 336.78551 * 18 16 15 20 20 Si 1.86801 * 120.00107 * 156.78458 * 18 16 15 21 21 H 1.48506 * 109.47115 * 270.00012 * 20 18 16 22 22 H 1.48498 * 109.47294 * 29.99956 * 20 18 16 23 23 H 1.48503 * 109.47158 * 150.00392 * 20 18 16 24 24 C 1.53007 * 109.46889 * 302.05992 * 4 3 2 25 25 C 1.53003 * 109.46807 * 301.13069 * 24 4 3 26 26 C 1.53001 * 109.47016 * 61.13088 * 24 4 3 27 27 H 1.09002 * 109.46868 * 299.99398 * 1 2 3 28 28 H 1.08995 * 109.47232 * 59.99848 * 1 2 3 29 29 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47194 * 59.99770 * 3 2 1 31 31 H 1.09001 * 109.46794 * 300.00026 * 3 2 1 32 32 H 0.96997 * 119.99807 * 321.39129 * 6 4 3 33 33 H 1.07996 * 119.87443 * 0.02562 * 11 10 7 34 34 H 1.07996 * 119.74942 * 179.68863 * 12 11 10 35 35 H 1.08006 * 119.87196 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.12637 * 180.02562 * 14 13 12 37 37 H 0.96996 * 120.00279 * 353.36257 * 19 18 16 38 38 H 1.09004 * 109.46911 * 181.12982 * 24 4 3 39 39 H 1.09000 * 109.47136 * 299.99724 * 25 24 4 40 40 H 1.08990 * 109.47378 * 60.00172 * 25 24 4 41 41 H 1.09001 * 109.46560 * 180.02562 * 25 24 4 42 42 H 1.08993 * 109.47318 * 42.99904 * 26 24 4 43 43 H 1.09000 * 109.46650 * 163.00339 * 26 24 4 44 44 H 1.08999 * 109.46784 * 282.99839 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9788 2.1797 0.0363 6 7 3.9707 0.5011 -1.2211 7 16 5.3462 0.9940 -2.0005 8 8 5.2231 2.3979 -2.1825 9 8 5.5461 0.0856 -3.0748 10 6 6.6911 0.7526 -0.8880 11 6 7.3807 1.8358 -0.3923 12 6 8.4433 1.6484 0.4778 13 6 8.8195 0.3710 0.8642 14 6 8.1405 -0.7261 0.3862 15 6 7.0600 -0.5478 -0.4978 16 6 6.3543 -1.6678 -0.9948 17 1 5.3071 -1.5792 -1.2436 18 6 7.0127 -2.8909 -1.1642 19 7 8.3125 -2.9194 -1.3107 20 14 6.0358 -4.4830 -1.1813 21 1 5.9309 -5.0143 0.2016 22 1 4.6751 -4.2232 -1.7162 23 1 6.7248 -5.4774 -2.0425 24 6 3.9838 0.3807 1.2216 25 6 3.5049 1.0799 2.4955 26 6 3.3842 -1.0253 1.1553 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.4532 -0.2402 -1.5727 33 1 7.0958 2.8352 -0.6862 34 1 8.9819 2.5038 0.8579 35 1 9.6488 0.2367 1.5430 36 1 8.4350 -1.7201 0.6888 37 1 8.8089 -2.0907 -1.3985 38 1 5.0717 0.3118 1.2320 39 1 3.9321 2.0816 2.5427 40 1 2.4172 1.1489 2.4851 41 1 3.8248 0.5075 3.3662 42 1 3.4667 -1.4079 0.1380 43 1 3.9247 -1.6832 1.8359 44 1 2.3341 -0.9865 1.4448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601356228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:47 Heat of formation + Delta-G solvation = -135.912962 kcal Electronic energy + Delta-G solvation = -28228.961936 eV Core-core repulsion = 24464.844782 eV Total energy + Delta-G solvation = -3764.117154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.98050 -39.54096 -38.07024 -37.06004 -36.70017 -35.83799 -33.72148 -31.96601 -31.25772 -29.60313 -27.91011 -27.13777 -26.75692 -24.27824 -23.54540 -22.98469 -20.65040 -20.30525 -19.98148 -18.61737 -18.05618 -17.62767 -17.23639 -16.65257 -16.57644 -16.10920 -15.76400 -15.48132 -15.33545 -15.06663 -14.99129 -14.56957 -14.33500 -14.00700 -13.73963 -13.33614 -13.24932 -13.04131 -12.97863 -12.91549 -12.84756 -12.74537 -12.67366 -12.49104 -12.34812 -12.22452 -12.00988 -11.91802 -11.63426 -11.55159 -11.24103 -11.11051 -10.98957 -10.34097 -10.16966 -9.93816 -9.59421 -9.28261 -6.64813 -0.18700 0.45165 0.89187 1.48560 1.62476 1.75816 2.28241 2.29629 2.60115 2.95848 2.96723 3.36131 3.78832 3.84754 3.98116 4.23463 4.27895 4.35237 4.38075 4.49208 4.49883 4.58645 4.65247 4.68392 4.69583 4.84352 4.94369 4.98643 5.03804 5.09148 5.13736 5.24716 5.28756 5.34697 5.45857 5.51529 5.62529 5.67259 5.70438 5.80989 5.87595 6.03226 6.19704 6.24439 6.37187 6.58074 6.80409 7.94178 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.006862 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.836520 B = 4079.166487 C = 4978.095366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.061 3.939 4 C 0.158 3.842 5 H 0.096 0.904 6 N -1.099 6.099 7 S 2.715 3.285 8 O -1.010 7.010 9 O -1.003 7.003 10 C -0.787 4.787 11 C -0.002 4.002 12 C -0.257 4.257 13 C -0.055 4.055 14 C -0.230 4.230 15 C 0.156 3.844 16 C -0.517 4.517 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.803 5.803 20 Si 1.101 2.899 21 H -0.255 1.255 22 H -0.255 1.255 23 H -0.274 1.274 24 C -0.110 4.110 25 C -0.139 4.139 26 C -0.126 4.126 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.421 0.579 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.286 0.714 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.028 0.972 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 4.467 7.164 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C -0.018 4.018 4 C 0.051 3.949 5 H 0.114 0.886 6 N -0.859 5.859 7 S 2.811 3.189 8 O -1.000 7.000 9 O -0.993 6.993 10 C -0.881 4.881 11 C -0.022 4.022 12 C -0.277 4.277 13 C -0.073 4.073 14 C -0.250 4.250 15 C 0.151 3.849 16 C -0.544 4.544 17 H 0.110 0.890 18 C -0.209 4.209 19 N -0.425 5.425 20 Si 0.918 3.082 21 H -0.179 1.179 22 H -0.179 1.179 23 H -0.199 1.199 24 C -0.131 4.131 25 C -0.197 4.197 26 C -0.183 4.183 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.257 0.743 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.880 3.170 6.250 14.663 hybrid contribution 0.564 1.344 0.344 1.498 sum -12.315 4.514 6.595 14.681 Atomic orbital electron populations 1.22895 0.80492 1.03429 1.00668 1.88102 1.20477 1.27107 1.95261 1.22812 0.91116 0.85745 1.02079 1.21052 0.94909 0.95472 0.83493 0.88635 1.55296 1.42470 1.48560 1.39575 1.00462 0.73344 0.71748 0.73315 1.93423 1.87252 1.33134 1.86217 1.93489 1.85993 1.65669 1.54188 1.30066 1.27595 1.00037 1.30400 1.20630 0.92948 0.96442 0.92139 1.20835 1.02854 0.96763 1.07217 1.21168 0.96852 0.92933 0.96364 1.21334 1.02272 0.97706 1.03690 1.17165 0.89887 0.90567 0.87244 1.21046 0.99910 0.96163 1.37259 0.89010 1.28309 0.96050 1.06827 0.89710 1.70516 1.08883 1.34178 1.28873 0.83232 0.75271 0.70423 0.79266 1.17921 1.17913 1.19851 1.21502 0.99940 0.96858 0.94758 1.21834 1.01957 1.00015 0.95854 1.21750 1.01129 0.94531 1.00882 0.92782 0.93840 0.89097 0.89410 0.92344 0.74314 0.85886 0.85344 0.85897 0.88693 0.90151 0.93175 0.92402 0.90661 0.92697 0.93695 0.95313 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.39 -8.70 6.43 -148.98 -0.96 -9.66 16 3 C 0.06 1.32 5.29 71.98 0.38 1.70 16 4 C 0.16 4.57 2.65 44.99 0.12 4.69 16 5 H 0.10 2.76 7.57 -2.38 -0.02 2.74 16 6 N -1.10 -38.50 3.92 -169.37 -0.66 -39.16 16 7 S 2.71 118.93 4.92 -56.49 -0.28 118.65 16 8 O -1.01 -45.04 16.43 -128.00 -2.10 -47.14 16 9 O -1.00 -51.44 16.52 -128.00 -2.11 -53.56 16 10 C -0.79 -36.67 5.12 22.73 0.12 -36.56 16 11 C 0.00 -0.08 9.54 22.22 0.21 0.13 16 12 C -0.26 -10.35 10.05 22.46 0.23 -10.12 16 13 C -0.05 -2.30 10.02 22.22 0.22 -2.08 16 14 C -0.23 -11.13 7.96 22.73 0.18 -10.95 16 15 C 0.16 7.80 4.75 -21.29 -0.10 7.70 16 16 C -0.52 -26.06 7.49 23.46 0.18 -25.88 16 17 H 0.09 4.43 5.68 -2.91 -0.02 4.41 16 18 C 0.01 0.48 4.96 85.25 0.42 0.90 16 19 N -0.80 -42.53 12.43 21.82 0.27 -42.26 16 20 Si 1.10 42.65 29.99 68.60 2.06 44.70 16 21 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 22 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 23 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 24 C -0.11 -3.29 2.95 -10.79 -0.03 -3.32 16 25 C -0.14 -3.16 8.74 71.98 0.63 -2.53 16 26 C -0.13 -3.80 7.84 71.98 0.56 -3.23 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.45 6.52 -2.39 -0.02 1.43 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.42 14.06 7.59 -96.75 -0.73 13.32 16 33 H 0.12 4.84 7.32 -2.91 -0.02 4.82 16 34 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 36 H 0.09 4.77 6.77 -2.91 -0.02 4.75 16 37 H 0.29 15.83 6.77 -92.71 -0.63 15.20 16 38 H 0.05 1.87 6.87 -2.38 -0.02 1.85 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.37 6.45 -2.39 -0.02 1.35 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.04 1.50 6.17 -2.39 -0.01 1.48 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 2.18 6.04 -2.39 -0.01 2.17 16 Total: -1.00 -64.90 357.17 1.00 -63.90 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: 0.42 Total: 42.50 kcal Atomic # 6 Polarization: -82.34 SS G_CDS: 4.36 Total: -77.98 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -0.39 Total: -81.42 kcal Atomic # 8 Polarization: -105.18 SS G_CDS: -5.17 Total: -110.36 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.06 Total: 44.70 kcal Atomic # 16 Polarization: 118.93 SS G_CDS: -0.28 Total: 118.65 kcal Total: -64.90 1.00 -63.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601356228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.017 kcal (2) G-P(sol) polarization free energy of solvation -64.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds