Wall clock time and date at job start Tue Mar 31 2020 15:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.52999 * 109.47103 * 240.00469 * 2 1 3 5 5 C 1.52993 * 109.47520 * 64.78688 * 4 2 1 6 6 O 1.42897 * 109.47464 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47527 * 119.99988 * 2 1 3 8 8 N 1.46502 * 109.46999 * 305.94229 * 7 2 1 9 9 S 1.65603 * 120.00021 * 162.94977 * 8 7 2 10 10 O 1.42099 * 106.39902 * 313.42432 * 9 8 7 11 11 O 1.42096 * 106.40435 * 180.50979 * 9 8 7 12 12 C 1.76193 * 107.22228 * 66.96308 * 9 8 7 13 13 C 1.37640 * 120.13027 * 113.17827 * 12 9 8 14 14 C 1.38614 * 120.25350 * 180.32416 * 13 12 9 15 15 C 1.38658 * 120.49510 * 359.67133 * 14 13 12 16 16 C 1.37596 * 120.25340 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.13039 * 292.87688 * 12 9 8 18 18 C 1.41396 * 120.23956 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99861 * 323.45146 * 18 17 12 20 20 C 1.39947 * 119.99821 * 143.45840 * 18 17 12 21 21 N 1.30826 * 119.99755 * 347.67596 * 20 18 17 22 22 Si 1.86793 * 119.99908 * 167.68381 * 20 18 17 23 23 H 1.48500 * 109.47324 * 184.91707 * 22 20 18 24 24 H 1.48501 * 109.47521 * 304.91808 * 22 20 18 25 25 H 1.48508 * 109.47143 * 64.91919 * 22 20 18 26 26 H 1.08996 * 109.47216 * 299.99717 * 1 2 3 27 27 H 1.09000 * 109.47091 * 60.00064 * 1 2 3 28 28 H 1.08997 * 109.46588 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47360 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47535 * 300.00274 * 3 2 1 31 31 H 1.09004 * 109.47504 * 59.99849 * 3 2 1 32 32 H 1.09006 * 109.46918 * 184.78766 * 4 2 1 33 33 H 1.09003 * 109.47142 * 304.78497 * 4 2 1 34 34 H 1.08997 * 109.47080 * 300.00101 * 5 4 2 35 35 H 1.09003 * 109.47069 * 59.99764 * 5 4 2 36 36 H 0.96694 * 114.00275 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47529 * 185.93797 * 7 2 1 38 38 H 1.08998 * 109.47167 * 65.93898 * 7 2 1 39 39 H 0.96998 * 120.00172 * 342.94368 * 8 7 2 40 40 H 1.08005 * 119.87579 * 0.02562 * 13 12 9 41 41 H 1.07997 * 119.75411 * 179.69418 * 14 13 12 42 42 H 1.08000 * 119.87062 * 180.02562 * 15 14 13 43 43 H 1.07994 * 120.12838 * 180.02562 * 16 15 14 44 44 H 0.96993 * 120.00394 * 353.91459 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6307 0.0662 -2.4956 6 8 2.1065 -0.6076 -3.6624 7 6 2.0401 -0.7212 1.2492 8 7 1.4385 -0.1181 2.4411 9 16 1.4615 -0.9328 3.8826 10 8 1.0515 -2.2633 3.5981 11 8 0.7992 -0.1003 4.8247 12 6 3.1429 -1.0302 4.4001 13 6 3.5600 -0.3546 5.5244 14 6 4.8836 -0.4241 5.9301 15 6 5.8004 -1.1786 5.2139 16 6 5.4042 -1.8681 4.0910 17 6 4.0631 -1.8041 3.6693 18 6 3.6445 -2.5080 2.5166 19 1 2.6638 -2.9593 2.4860 20 6 4.5011 -2.6198 1.4156 21 7 5.5797 -1.8825 1.3484 22 14 4.1041 -3.8216 0.0418 23 1 5.2178 -3.8363 -0.9403 24 1 3.9273 -5.1822 0.6100 25 1 2.8515 -3.4018 -0.6366 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1267 -0.7960 -1.2074 33 1 1.6083 -1.7211 -1.2933 34 1 0.5441 0.1411 -2.5374 35 1 2.0624 1.0662 -2.4516 36 1 1.8832 -0.1634 -4.4917 37 1 3.1249 -0.6301 1.3039 38 1 1.7662 -1.7750 1.1976 39 1 1.0269 0.7585 2.3859 40 1 2.8543 0.2358 6.0901 41 1 5.2032 0.1133 6.8107 42 1 6.8291 -1.2260 5.5392 43 1 6.1198 -2.4555 3.5350 44 1 5.7408 -1.1969 2.0153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601360234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:29 Heat of formation + Delta-G solvation = -127.413401 kcal Electronic energy + Delta-G solvation = -27918.150230 eV Core-core repulsion = 24154.401645 eV Total energy + Delta-G solvation = -3763.748585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.66352 -37.91501 -36.48577 -36.21678 -34.92588 -34.17669 -32.95129 -30.26065 -29.48213 -28.56507 -27.16101 -26.22917 -25.21451 -22.50053 -21.90981 -21.22110 -18.81119 -18.57379 -18.18953 -17.52525 -16.73285 -16.17685 -15.52060 -15.30910 -14.90891 -14.75399 -14.28211 -14.05071 -13.92137 -13.73248 -13.53196 -13.14208 -13.00583 -12.82594 -12.46732 -12.20187 -11.67466 -11.60697 -11.45574 -11.42980 -11.33998 -11.28029 -11.18348 -11.13538 -10.96498 -10.66396 -10.59700 -10.49412 -10.43272 -10.00692 -9.79935 -9.77035 -9.39870 -9.24340 -8.62071 -8.28109 -7.77903 -7.38357 -4.86839 1.49220 2.15812 2.59287 3.11879 3.15075 3.30121 3.86948 3.93168 4.27863 4.35022 4.64007 4.91040 4.99002 5.10560 5.14596 5.26458 5.41755 5.47160 5.53598 5.72183 5.76632 5.86520 5.95926 6.00518 6.02190 6.05210 6.16386 6.22442 6.27656 6.31753 6.46990 6.50564 6.57625 6.66312 6.81480 6.83632 7.11634 7.25645 7.34500 7.52431 7.63392 7.64113 7.67230 7.81080 7.95563 8.35343 8.57540 9.85419 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.006288 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.507952 B = 4451.886834 C = 5657.133428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.145 4.145 4 C -0.114 4.114 5 C 0.075 3.925 6 O -0.574 6.574 7 C 0.136 3.864 8 N -1.118 6.118 9 S 2.709 3.291 10 O -0.973 6.973 11 O -1.000 7.000 12 C -0.772 4.772 13 C 0.008 3.992 14 C -0.253 4.253 15 C -0.059 4.059 16 C -0.204 4.204 17 C 0.171 3.829 18 C -0.536 4.536 19 H 0.117 0.883 20 C 0.045 3.955 21 N -0.792 5.792 22 Si 1.046 2.954 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.258 1.258 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.374 0.626 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.404 0.596 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 5.400 -7.367 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.152 4.152 5 C -0.003 4.003 6 O -0.379 6.379 7 C 0.010 3.990 8 N -0.875 5.875 9 S 2.806 3.194 10 O -0.963 6.963 11 O -0.991 6.991 12 C -0.867 4.867 13 C -0.012 4.012 14 C -0.274 4.274 15 C -0.078 4.078 16 C -0.223 4.223 17 C 0.167 3.833 18 C -0.564 4.564 19 H 0.135 0.865 20 C -0.178 4.178 21 N -0.416 5.416 22 Si 0.868 3.132 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.183 1.183 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.220 0.780 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.237 0.763 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.130 0.870 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.841 3.869 -7.922 10.058 hybrid contribution 0.101 1.623 1.201 2.022 sum -4.740 5.493 -6.721 9.890 Atomic orbital electron populations 1.21939 0.94598 1.02319 1.01277 1.20779 0.95809 0.95866 0.94957 1.21966 1.01756 0.95263 1.01247 1.21599 1.02753 0.99565 0.91276 1.22362 0.97258 0.95171 0.85492 1.86521 1.81237 1.53870 1.16280 1.21820 0.98704 0.96845 0.81624 1.55507 1.74173 1.32441 1.25398 1.00770 0.74292 0.72949 0.71424 1.93475 1.81962 1.36678 1.84186 1.93452 1.74928 1.69456 1.61282 1.29996 1.24278 1.19122 1.13272 1.20347 0.95355 0.92745 0.92788 1.20526 0.94004 1.09213 1.03613 1.20888 0.97428 0.94899 0.94580 1.21428 0.97509 1.04636 0.98755 1.17099 0.90619 0.85838 0.89785 1.21479 1.06421 1.29708 0.98825 0.86536 1.26997 0.91356 0.98339 1.01067 1.70480 1.21923 1.13583 1.35589 0.83939 0.78181 0.76018 0.75020 1.19481 1.19668 1.18273 0.92355 0.92949 0.92174 0.92035 0.92792 0.92530 0.90361 0.90578 0.93712 0.93445 0.78018 0.89513 0.89679 0.76258 0.87171 0.88357 0.88487 0.87032 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.99 37.16 0.30 -1.50 16 2 C -0.07 -1.03 0.56 -154.51 -0.09 -1.11 16 3 C -0.15 -1.83 7.87 37.16 0.29 -1.53 16 4 C -0.11 -1.66 4.59 -26.73 -0.12 -1.78 16 5 C 0.07 0.88 6.32 37.15 0.23 1.11 16 6 O -0.57 -7.10 13.66 -35.23 -0.48 -7.58 16 7 C 0.14 2.42 3.15 -4.04 -0.01 2.41 16 8 N -1.12 -19.69 5.28 -10.62 -0.06 -19.75 16 9 S 2.71 57.88 5.44 -107.50 -0.58 57.29 16 10 O -0.97 -23.16 14.97 -57.18 -0.86 -24.01 16 11 O -1.00 -22.34 16.97 -57.18 -0.97 -23.31 16 12 C -0.77 -17.93 5.97 -38.87 -0.23 -18.16 16 13 C 0.01 0.17 9.53 -39.66 -0.38 -0.21 16 14 C -0.25 -5.35 10.05 -39.29 -0.39 -5.74 16 15 C -0.06 -1.27 10.02 -39.66 -0.40 -1.66 16 16 C -0.20 -4.80 7.72 -38.87 -0.30 -5.10 16 17 C 0.17 4.17 5.18 -106.82 -0.55 3.61 16 18 C -0.54 -12.77 4.68 -37.74 -0.18 -12.94 16 19 H 0.12 2.85 4.65 -52.49 -0.24 2.61 16 20 C 0.05 1.02 3.87 -17.34 -0.07 0.95 16 21 N -0.79 -18.69 12.59 55.55 0.70 -17.99 16 22 Si 1.05 20.37 29.95 -169.99 -5.09 15.28 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.26 -4.60 6.28 56.52 0.35 -4.24 16 26 H 0.06 0.70 6.89 -51.93 -0.36 0.34 16 27 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.56 6.35 -51.93 -0.33 0.23 16 31 H 0.06 0.68 6.93 -51.93 -0.36 0.32 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.17 7.37 -51.93 -0.38 0.79 16 34 H 0.04 0.46 6.56 -51.93 -0.34 0.12 16 35 H 0.05 0.50 6.35 -51.93 -0.33 0.17 16 36 H 0.37 2.67 9.12 45.56 0.42 3.09 16 37 H 0.09 1.72 5.79 -51.93 -0.30 1.42 16 38 H 0.09 1.64 6.13 -51.93 -0.32 1.32 16 39 H 0.40 5.98 6.53 -34.47 -0.23 5.75 16 40 H 0.11 2.26 7.32 -52.48 -0.38 1.87 16 41 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.11 2.66 6.82 -52.49 -0.36 2.30 16 44 H 0.30 7.26 6.11 -40.82 -0.25 7.01 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -29.48 346.86 -9.07 -38.56 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -5.06 Total: 17.95 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: -1.90 Total: -41.67 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.64 Total: -37.74 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -2.31 Total: -54.90 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.09 Total: 15.28 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.58 Total: 57.29 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.48 -9.07 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601360234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.858 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds