Wall clock time and date at job start Tue Mar 31 2020 15:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.52999 * 109.47103 * 240.00469 * 2 1 3 5 5 C 1.52993 * 109.47520 * 64.78688 * 4 2 1 6 6 O 1.42897 * 109.47464 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47527 * 119.99988 * 2 1 3 8 8 N 1.46502 * 109.46999 * 305.94229 * 7 2 1 9 9 S 1.65603 * 120.00021 * 162.94977 * 8 7 2 10 10 O 1.42099 * 106.39902 * 313.42432 * 9 8 7 11 11 O 1.42096 * 106.40435 * 180.50979 * 9 8 7 12 12 C 1.76193 * 107.22228 * 66.96308 * 9 8 7 13 13 C 1.37640 * 120.13027 * 113.17827 * 12 9 8 14 14 C 1.38614 * 120.25350 * 180.32416 * 13 12 9 15 15 C 1.38658 * 120.49510 * 359.67133 * 14 13 12 16 16 C 1.37596 * 120.25340 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.13039 * 292.87688 * 12 9 8 18 18 C 1.41396 * 120.23956 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99861 * 323.45146 * 18 17 12 20 20 C 1.39947 * 119.99821 * 143.45840 * 18 17 12 21 21 N 1.30826 * 119.99755 * 347.67596 * 20 18 17 22 22 Si 1.86793 * 119.99908 * 167.68381 * 20 18 17 23 23 H 1.48500 * 109.47324 * 184.91707 * 22 20 18 24 24 H 1.48501 * 109.47521 * 304.91808 * 22 20 18 25 25 H 1.48508 * 109.47143 * 64.91919 * 22 20 18 26 26 H 1.08996 * 109.47216 * 299.99717 * 1 2 3 27 27 H 1.09000 * 109.47091 * 60.00064 * 1 2 3 28 28 H 1.08997 * 109.46588 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47360 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47535 * 300.00274 * 3 2 1 31 31 H 1.09004 * 109.47504 * 59.99849 * 3 2 1 32 32 H 1.09006 * 109.46918 * 184.78766 * 4 2 1 33 33 H 1.09003 * 109.47142 * 304.78497 * 4 2 1 34 34 H 1.08997 * 109.47080 * 300.00101 * 5 4 2 35 35 H 1.09003 * 109.47069 * 59.99764 * 5 4 2 36 36 H 0.96694 * 114.00275 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47529 * 185.93797 * 7 2 1 38 38 H 1.08998 * 109.47167 * 65.93898 * 7 2 1 39 39 H 0.96998 * 120.00172 * 342.94368 * 8 7 2 40 40 H 1.08005 * 119.87579 * 0.02562 * 13 12 9 41 41 H 1.07997 * 119.75411 * 179.69418 * 14 13 12 42 42 H 1.08000 * 119.87062 * 180.02562 * 15 14 13 43 43 H 1.07994 * 120.12838 * 180.02562 * 16 15 14 44 44 H 0.96993 * 120.00394 * 353.91459 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6307 0.0662 -2.4956 6 8 2.1065 -0.6076 -3.6624 7 6 2.0401 -0.7212 1.2492 8 7 1.4385 -0.1181 2.4411 9 16 1.4615 -0.9328 3.8826 10 8 1.0515 -2.2633 3.5981 11 8 0.7992 -0.1003 4.8247 12 6 3.1429 -1.0302 4.4001 13 6 3.5600 -0.3546 5.5244 14 6 4.8836 -0.4241 5.9301 15 6 5.8004 -1.1786 5.2139 16 6 5.4042 -1.8681 4.0910 17 6 4.0631 -1.8041 3.6693 18 6 3.6445 -2.5080 2.5166 19 1 2.6638 -2.9593 2.4860 20 6 4.5011 -2.6198 1.4156 21 7 5.5797 -1.8825 1.3484 22 14 4.1041 -3.8216 0.0418 23 1 5.2178 -3.8363 -0.9403 24 1 3.9273 -5.1822 0.6100 25 1 2.8515 -3.4018 -0.6366 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1267 -0.7960 -1.2074 33 1 1.6083 -1.7211 -1.2933 34 1 0.5441 0.1411 -2.5374 35 1 2.0624 1.0662 -2.4516 36 1 1.8832 -0.1634 -4.4917 37 1 3.1249 -0.6301 1.3039 38 1 1.7662 -1.7750 1.1976 39 1 1.0269 0.7585 2.3859 40 1 2.8543 0.2358 6.0901 41 1 5.2032 0.1133 6.8107 42 1 6.8291 -1.2260 5.5392 43 1 6.1198 -2.4555 3.5350 44 1 5.7408 -1.1969 2.0153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601360234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:28 Heat of formation + Delta-G solvation = -148.985011 kcal Electronic energy + Delta-G solvation = -27919.085645 eV Core-core repulsion = 24154.401645 eV Total energy + Delta-G solvation = -3764.684000 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.94444 -39.52949 -38.13825 -37.35159 -36.73168 -35.90058 -34.33261 -32.01031 -31.24247 -29.61750 -28.15301 -27.70339 -26.79395 -23.70728 -23.56874 -22.98113 -20.47123 -19.91731 -19.76121 -18.79668 -18.12326 -17.77853 -17.08142 -16.60916 -16.36157 -16.29568 -15.73678 -15.59348 -15.40466 -15.12104 -14.92157 -14.52257 -14.49684 -14.08141 -14.04833 -13.53785 -13.28119 -13.06314 -13.05318 -12.92167 -12.75991 -12.74576 -12.69723 -12.49649 -12.43666 -12.24950 -12.04040 -11.72281 -11.67257 -11.54177 -11.18534 -11.09005 -10.96217 -10.67788 -10.18218 -10.02498 -9.56200 -9.19159 -6.68845 -0.20683 0.38581 0.83147 1.49207 1.56123 1.73134 2.24311 2.32869 2.60865 2.90842 3.32372 3.36409 3.71717 3.80964 3.90787 4.14998 4.20325 4.30706 4.31590 4.44328 4.53217 4.59069 4.66017 4.70557 4.79817 4.83013 4.92570 4.97460 5.05595 5.08234 5.10823 5.22694 5.27339 5.28043 5.36082 5.48521 5.51934 5.56054 5.57838 5.77449 5.85021 6.00316 6.16716 6.30924 6.56830 6.78606 7.00479 8.03836 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.006288 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.507952 B = 4451.886834 C = 5657.133428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.117 4.117 5 C 0.079 3.921 6 O -0.598 6.598 7 C 0.137 3.863 8 N -1.101 6.101 9 S 2.726 3.274 10 O -1.000 7.000 11 O -1.009 7.009 12 C -0.790 4.790 13 C -0.008 4.008 14 C -0.250 4.250 15 C -0.057 4.057 16 C -0.227 4.227 17 C 0.150 3.850 18 C -0.549 4.549 19 H 0.104 0.896 20 C 0.031 3.969 21 N -0.807 5.807 22 Si 1.069 2.931 23 H -0.270 1.270 24 H -0.269 1.269 25 H -0.238 1.238 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.100 0.900 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 7.001 -8.026 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.155 4.155 5 C 0.002 3.998 6 O -0.407 6.407 7 C 0.011 3.989 8 N -0.862 5.862 9 S 2.821 3.179 10 O -0.990 6.990 11 O -1.000 7.000 12 C -0.883 4.883 13 C -0.027 4.027 14 C -0.270 4.270 15 C -0.075 4.075 16 C -0.247 4.247 17 C 0.146 3.854 18 C -0.577 4.577 19 H 0.122 0.878 20 C -0.188 4.188 21 N -0.431 5.431 22 Si 0.887 3.113 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.161 1.161 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.256 0.744 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.712 5.496 -8.572 11.675 hybrid contribution 0.392 1.175 1.488 1.937 sum -5.320 6.671 -7.084 11.090 Atomic orbital electron populations 1.21962 0.92854 1.02331 1.03008 1.20716 0.97130 0.96290 0.92708 1.21967 1.00745 0.94293 1.03056 1.21587 1.01068 0.99641 0.93242 1.22306 0.98544 0.94880 0.84044 1.86459 1.81678 1.54935 1.17593 1.21708 0.97481 0.96508 0.83206 1.55112 1.73924 1.33000 1.24191 1.00168 0.73496 0.72430 0.71783 1.93439 1.82253 1.38569 1.84740 1.93428 1.74944 1.69425 1.62172 1.30327 1.24938 1.19164 1.13863 1.20693 0.96461 0.92899 0.92673 1.20960 0.93439 1.08400 1.04201 1.21251 0.99142 0.93679 0.93472 1.21465 0.97281 1.05959 0.99998 1.17362 0.91381 0.86377 0.90326 1.21409 1.06189 1.30660 0.99400 0.87779 1.27739 0.90688 0.98500 1.01901 1.70547 1.22771 1.14149 1.35613 0.83698 0.78998 0.74918 0.73686 1.19431 1.19402 1.16106 0.91888 0.89970 0.93094 0.93708 0.89841 0.91865 0.92881 0.91996 0.91493 0.91946 0.75394 0.91900 0.91661 0.74421 0.85611 0.84942 0.85417 0.88178 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 7.99 71.98 0.58 -2.69 16 2 C -0.07 -1.81 0.56 -52.18 -0.03 -1.84 16 3 C -0.14 -3.33 7.87 71.98 0.57 -2.76 16 4 C -0.12 -3.32 4.59 30.59 0.14 -3.18 16 5 C 0.08 1.66 6.32 71.98 0.45 2.11 16 6 O -0.60 -13.50 13.66 -148.98 -2.03 -15.54 16 7 C 0.14 4.93 3.15 86.38 0.27 5.21 16 8 N -1.10 -38.52 5.28 -187.50 -0.99 -39.51 16 9 S 2.73 116.91 5.44 -56.49 -0.31 116.61 16 10 O -1.00 -48.55 14.97 -128.00 -1.92 -50.46 16 11 O -1.01 -44.29 16.97 -128.00 -2.17 -46.46 16 12 C -0.79 -36.92 5.97 22.73 0.14 -36.78 16 13 C -0.01 -0.33 9.53 22.22 0.21 -0.12 16 14 C -0.25 -10.06 10.05 22.46 0.23 -9.84 16 15 C -0.06 -2.37 10.02 22.22 0.22 -2.15 16 16 C -0.23 -10.88 7.72 22.73 0.18 -10.70 16 17 C 0.15 7.47 5.18 -21.29 -0.11 7.36 16 18 C -0.55 -27.02 4.68 23.46 0.11 -26.91 16 19 H 0.10 5.32 4.65 -2.91 -0.01 5.31 16 20 C 0.03 1.45 3.87 85.26 0.33 1.78 16 21 N -0.81 -39.34 12.59 21.83 0.27 -39.06 16 22 Si 1.07 41.85 29.95 68.60 2.05 43.91 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.24 -8.43 6.28 99.48 0.62 -7.80 16 26 H 0.06 1.36 6.89 -2.39 -0.02 1.34 16 27 H 0.08 1.38 6.56 -2.39 -0.02 1.36 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.45 6.35 -2.39 -0.02 1.43 16 31 H 0.06 1.37 6.93 -2.38 -0.02 1.35 16 32 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.06 1.89 7.37 -2.39 -0.02 1.87 16 34 H 0.07 1.11 6.56 -2.39 -0.02 1.09 16 35 H 0.06 1.12 6.35 -2.39 -0.02 1.10 16 36 H 0.40 4.61 9.12 -74.06 -0.68 3.93 16 37 H 0.06 2.59 5.79 -2.39 -0.01 2.58 16 38 H 0.07 2.61 6.13 -2.39 -0.01 2.59 16 39 H 0.42 11.87 6.53 -96.75 -0.63 11.24 16 40 H 0.13 4.96 7.32 -2.91 -0.02 4.93 16 41 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.10 4.93 6.82 -2.91 -0.02 4.91 16 44 H 0.29 14.59 6.11 -92.71 -0.57 14.03 16 Total: -1.00 -64.36 346.86 -1.95 -66.30 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -0.14 Total: 44.73 kcal Atomic # 6 Polarization: -83.79 SS G_CDS: 3.28 Total: -80.51 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -0.72 Total: -78.57 kcal Atomic # 8 Polarization: -106.34 SS G_CDS: -6.12 Total: -112.46 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.05 Total: 43.91 kcal Atomic # 16 Polarization: 116.91 SS G_CDS: -0.31 Total: 116.61 kcal Total: -64.36 -1.95 -66.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601360234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.683 kcal (2) G-P(sol) polarization free energy of solvation -64.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds