Wall clock time and date at job start Tue Mar 31 2020 15:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42891 * 113.99948 * 2 1 4 4 H 1.08999 * 109.47412 * 352.92130 * 3 2 1 5 5 C 1.53000 * 109.47058 * 232.91872 * 3 2 1 6 6 N 1.46501 * 109.47416 * 61.83491 * 5 3 2 7 7 S 1.65601 * 120.00430 * 163.84733 * 6 5 3 8 8 O 1.42098 * 106.39738 * 309.90664 * 7 6 5 9 9 O 1.42097 * 106.40269 * 176.98994 * 7 6 5 10 10 C 1.76193 * 107.21946 * 63.44627 * 7 6 5 11 11 C 1.37635 * 120.13208 * 244.95637 * 10 7 6 12 12 C 1.38610 * 120.25086 * 180.29548 * 11 10 7 13 13 C 1.38653 * 120.50256 * 359.45028 * 12 11 10 14 14 C 1.37596 * 120.24639 * 0.54947 * 13 12 11 15 15 C 1.40705 * 120.12847 * 64.97826 * 10 7 6 16 16 C 1.41397 * 120.24083 * 359.95582 * 15 10 7 17 17 H 1.07997 * 120.00119 * 330.75160 * 16 15 10 18 18 C 1.39947 * 120.00000 * 150.74587 * 16 15 10 19 19 N 1.30826 * 119.99674 * 344.50792 * 18 16 15 20 20 Si 1.86796 * 120.00103 * 164.50698 * 18 16 15 21 21 H 1.48495 * 109.47333 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46823 * 120.00242 * 20 18 16 23 23 H 1.48497 * 109.47416 * 240.00019 * 20 18 16 24 24 C 1.53001 * 109.47133 * 112.92221 * 3 2 1 25 25 C 1.52995 * 109.46812 * 293.87591 * 24 3 2 26 26 C 1.53000 * 109.47330 * 53.87594 * 24 3 2 27 27 H 1.08997 * 109.46602 * 305.35252 * 1 2 3 28 28 H 1.08997 * 109.46894 * 65.35979 * 1 2 3 29 29 H 1.09005 * 109.47011 * 185.35612 * 1 2 3 30 30 H 1.08996 * 109.47191 * 301.83478 * 5 3 2 31 31 H 1.09005 * 109.47153 * 181.83245 * 5 3 2 32 32 H 0.97004 * 119.99245 * 343.84444 * 6 5 3 33 33 H 1.08002 * 119.87224 * 0.02867 * 11 10 7 34 34 H 1.08004 * 119.74834 * 179.70470 * 12 11 10 35 35 H 1.08002 * 119.88036 * 180.30126 * 13 12 11 36 36 H 1.08001 * 120.13095 * 179.74877 * 14 13 12 37 37 H 0.97000 * 119.99922 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.47247 * 173.88169 * 24 3 2 39 39 H 1.09003 * 109.47036 * 65.67961 * 25 24 3 40 40 H 1.09003 * 109.47219 * 185.67799 * 25 24 3 41 41 H 1.08997 * 109.47591 * 305.68087 * 25 24 3 42 42 H 1.09003 * 109.46870 * 60.00205 * 26 24 3 43 43 H 1.08995 * 109.47194 * 180.02562 * 26 24 3 44 44 H 1.08996 * 109.47010 * 300.00162 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2264 2.0521 -0.1266 5 6 3.0122 1.4175 -1.1508 6 7 2.3143 1.2336 -2.4257 7 16 3.0418 1.6907 -3.8414 8 8 3.5013 3.0209 -3.6451 9 8 2.1527 1.3219 -4.8867 10 6 4.4797 0.6911 -4.0354 11 6 5.7297 1.2665 -4.0096 12 6 6.8623 0.4833 -4.1681 13 6 6.7512 -0.8877 -4.3428 14 6 5.5117 -1.4844 -4.3719 15 6 4.3545 -0.6985 -4.2178 16 6 3.0756 -1.3007 -4.2456 17 1 2.2597 -0.8616 -3.6906 18 6 2.8668 -2.4657 -4.9923 19 7 3.7419 -2.8304 -5.8938 20 14 1.3387 -3.5001 -4.7018 21 1 0.5134 -2.8757 -3.6369 22 1 0.5490 -3.5797 -5.9568 23 1 1.7387 -4.8669 -4.2811 24 6 2.7309 1.5428 1.3286 25 6 1.7066 1.5823 2.4644 26 6 3.7263 0.4081 1.5788 27 1 -0.3632 0.5946 0.8382 28 1 -0.3633 0.4284 -0.9341 29 1 -0.3633 -1.0232 0.0959 30 1 3.7781 0.6497 -1.0418 31 1 3.4794 2.4022 -1.1311 32 1 1.4261 0.8440 -2.4405 33 1 5.8283 2.3328 -3.8696 34 1 7.8391 0.9439 -4.1512 35 1 7.6406 -1.4890 -4.4605 36 1 5.4271 -2.5519 -4.5122 37 1 3.5974 -3.6381 -6.4112 38 1 3.2649 2.4922 1.2878 39 1 1.2439 0.6011 2.5706 40 1 2.2063 1.8511 3.3951 41 1 0.9399 2.3228 2.2367 42 1 4.4561 0.3800 0.7696 43 1 4.2394 0.5770 2.5255 44 1 3.1923 -0.5412 1.6197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601361212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:38 Heat of formation + Delta-G solvation = -119.046484 kcal Electronic energy + Delta-G solvation = -27362.387697 eV Core-core repulsion = 23599.001929 eV Total energy + Delta-G solvation = -3763.385768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.97661 -37.55233 -36.19276 -34.86779 -34.80278 -34.09362 -33.78875 -30.19542 -29.55169 -28.48107 -27.05912 -26.09655 -25.48972 -22.81830 -21.63176 -21.11189 -20.12837 -18.52261 -17.66259 -16.88669 -16.60309 -16.35923 -15.67476 -15.46439 -15.30253 -14.54991 -14.31053 -14.10242 -13.90356 -13.60512 -13.27894 -13.14720 -12.98225 -12.76525 -12.72547 -12.13515 -11.90487 -11.84922 -11.53231 -11.46324 -11.28434 -11.25533 -11.14378 -11.08614 -10.98261 -10.95349 -10.72349 -10.66289 -10.61422 -10.47287 -9.84652 -9.41691 -9.39131 -9.37714 -8.70465 -8.00155 -7.57826 -7.02675 -4.70657 1.57438 2.37193 2.74585 2.99354 3.05747 3.12931 3.80675 3.81992 3.95967 4.42895 4.71637 4.78139 4.81990 4.95456 5.20703 5.26207 5.31742 5.43137 5.47505 5.57531 5.65407 5.69178 5.71641 5.78997 5.84305 5.89689 6.01270 6.06841 6.09059 6.25817 6.32121 6.36869 6.44853 6.47347 6.81793 6.96342 7.11415 7.28185 7.34500 7.51372 7.57534 7.70046 7.83249 7.93375 8.32207 8.54038 8.67902 9.92603 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.005795 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.248261 B = 4830.900448 C = 5836.495421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.087 3.913 4 H 0.068 0.932 5 C 0.117 3.883 6 N -1.118 6.118 7 S 2.700 3.300 8 O -1.000 7.000 9 O -0.965 6.965 10 C -0.775 4.775 11 C -0.002 4.002 12 C -0.251 4.251 13 C -0.076 4.076 14 C -0.158 4.158 15 C 0.190 3.810 16 C -0.444 4.444 17 H 0.090 0.910 18 C 0.082 3.918 19 N -0.773 5.773 20 Si 0.913 3.087 21 H -0.254 1.254 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.108 4.108 25 C -0.145 4.145 26 C -0.145 4.145 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.410 0.590 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.287 0.713 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 2.876 12.638 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.286 6.286 3 C 0.028 3.972 4 H 0.086 0.914 5 C -0.010 4.010 6 N -0.875 5.875 7 S 2.798 3.202 8 O -0.991 6.991 9 O -0.955 6.955 10 C -0.871 4.871 11 C -0.022 4.022 12 C -0.272 4.272 13 C -0.095 4.095 14 C -0.177 4.177 15 C 0.185 3.815 16 C -0.472 4.472 17 H 0.107 0.893 18 C -0.140 4.140 19 N -0.396 5.396 20 Si 0.737 3.263 21 H -0.177 1.177 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.127 4.127 25 C -0.203 4.203 26 C -0.202 4.202 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.243 0.757 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.235 3.302 11.895 13.051 hybrid contribution -0.557 -1.093 0.109 1.232 sum -4.792 2.208 12.004 13.112 Atomic orbital electron populations 1.22875 0.81686 1.02623 0.99744 1.87992 1.18924 1.26922 1.94798 1.22404 0.95462 0.85511 0.93857 0.91360 1.21480 0.95060 1.02073 0.82418 1.55568 1.29276 1.81403 1.21283 1.01062 0.74208 0.73005 0.71942 1.93439 1.82985 1.36487 1.86142 1.93542 1.64829 1.84202 1.52961 1.29833 1.14127 1.07592 1.35508 1.20249 0.91700 0.97617 0.92661 1.20462 0.96506 0.94280 1.15937 1.20871 0.96670 0.94504 0.97424 1.21390 0.91424 0.99755 1.05177 1.16975 0.93416 0.88200 0.82931 1.19880 0.95673 1.07206 1.24461 0.89258 1.25943 0.98478 0.96832 0.92720 1.69810 1.34462 1.21439 1.13929 0.86155 0.81000 0.79290 0.79898 1.17692 1.19461 1.19462 1.21469 0.97061 1.00061 0.94138 1.21826 0.98682 1.01842 0.97912 1.21778 0.98622 0.98682 1.01148 0.94263 0.94042 0.89786 0.90561 0.89912 0.75711 0.87482 0.88781 0.88874 0.86341 0.90213 0.90131 0.92244 0.92641 0.93133 0.92018 0.93237 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.67 101.05 1.08 1.38 16 2 O -0.37 -5.01 8.75 -35.23 -0.31 -5.32 16 3 C 0.09 1.09 2.04 -26.73 -0.05 1.04 16 4 H 0.07 0.77 7.62 -51.93 -0.40 0.38 16 5 C 0.12 1.79 5.63 -4.04 -0.02 1.77 16 6 N -1.12 -19.99 5.05 -10.61 -0.05 -20.05 16 7 S 2.70 59.72 4.96 -107.50 -0.53 59.18 16 8 O -1.00 -22.76 16.48 -57.17 -0.94 -23.70 16 9 O -0.96 -24.30 16.59 -57.17 -0.95 -25.25 16 10 C -0.78 -18.71 5.91 -38.87 -0.23 -18.94 16 11 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 12 C -0.25 -5.53 10.05 -39.29 -0.39 -5.93 16 13 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 14 C -0.16 -3.93 8.66 -38.87 -0.34 -4.27 16 15 C 0.19 4.87 5.52 -106.82 -0.59 4.28 16 16 C -0.44 -11.28 7.60 -37.74 -0.29 -11.57 16 17 H 0.09 2.15 5.83 -52.49 -0.31 1.84 16 18 C 0.08 1.99 5.15 -17.34 -0.09 1.91 16 19 N -0.77 -19.30 11.15 55.55 0.62 -18.68 16 20 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 21 H -0.25 -4.94 7.11 56.52 0.40 -4.53 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.11 -1.15 2.74 -90.62 -0.25 -1.40 16 25 C -0.15 -1.31 8.62 37.16 0.32 -0.99 16 26 C -0.15 -1.65 8.76 37.16 0.33 -1.32 16 27 H 0.04 0.35 7.62 -51.93 -0.40 -0.05 16 28 H 0.04 0.44 8.05 -51.93 -0.42 0.02 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.24 6.69 -51.93 -0.35 0.89 16 31 H 0.08 1.20 7.77 -51.93 -0.40 0.80 16 32 H 0.41 6.79 8.10 -34.48 -0.28 6.51 16 33 H 0.11 2.25 7.33 -52.49 -0.38 1.87 16 34 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.12 2.97 6.44 -52.49 -0.34 2.64 16 37 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.76 6.64 -51.93 -0.34 0.41 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.80 7.53 -51.93 -0.39 0.41 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -30.84 367.41 -9.47 -40.31 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.51 Total: 11.33 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: -1.30 Total: -36.58 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.57 Total: -38.73 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -2.20 Total: -54.27 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 59.72 SS G_CDS: -0.53 Total: 59.18 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.84 -9.47 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601361212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.733 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds