Wall clock time and date at job start Tue Mar 31 2020 15:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42891 * 113.99948 * 2 1 4 4 H 1.08999 * 109.47412 * 352.92130 * 3 2 1 5 5 C 1.53000 * 109.47058 * 232.91872 * 3 2 1 6 6 N 1.46501 * 109.47416 * 61.83491 * 5 3 2 7 7 S 1.65601 * 120.00430 * 163.84733 * 6 5 3 8 8 O 1.42098 * 106.39738 * 309.90664 * 7 6 5 9 9 O 1.42097 * 106.40269 * 176.98994 * 7 6 5 10 10 C 1.76193 * 107.21946 * 63.44627 * 7 6 5 11 11 C 1.37635 * 120.13208 * 244.95637 * 10 7 6 12 12 C 1.38610 * 120.25086 * 180.29548 * 11 10 7 13 13 C 1.38653 * 120.50256 * 359.45028 * 12 11 10 14 14 C 1.37596 * 120.24639 * 0.54947 * 13 12 11 15 15 C 1.40705 * 120.12847 * 64.97826 * 10 7 6 16 16 C 1.41397 * 120.24083 * 359.95582 * 15 10 7 17 17 H 1.07997 * 120.00119 * 330.75160 * 16 15 10 18 18 C 1.39947 * 120.00000 * 150.74587 * 16 15 10 19 19 N 1.30826 * 119.99674 * 344.50792 * 18 16 15 20 20 Si 1.86796 * 120.00103 * 164.50698 * 18 16 15 21 21 H 1.48495 * 109.47333 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46823 * 120.00242 * 20 18 16 23 23 H 1.48497 * 109.47416 * 240.00019 * 20 18 16 24 24 C 1.53001 * 109.47133 * 112.92221 * 3 2 1 25 25 C 1.52995 * 109.46812 * 293.87591 * 24 3 2 26 26 C 1.53000 * 109.47330 * 53.87594 * 24 3 2 27 27 H 1.08997 * 109.46602 * 305.35252 * 1 2 3 28 28 H 1.08997 * 109.46894 * 65.35979 * 1 2 3 29 29 H 1.09005 * 109.47011 * 185.35612 * 1 2 3 30 30 H 1.08996 * 109.47191 * 301.83478 * 5 3 2 31 31 H 1.09005 * 109.47153 * 181.83245 * 5 3 2 32 32 H 0.97004 * 119.99245 * 343.84444 * 6 5 3 33 33 H 1.08002 * 119.87224 * 0.02867 * 11 10 7 34 34 H 1.08004 * 119.74834 * 179.70470 * 12 11 10 35 35 H 1.08002 * 119.88036 * 180.30126 * 13 12 11 36 36 H 1.08001 * 120.13095 * 179.74877 * 14 13 12 37 37 H 0.97000 * 119.99922 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.47247 * 173.88169 * 24 3 2 39 39 H 1.09003 * 109.47036 * 65.67961 * 25 24 3 40 40 H 1.09003 * 109.47219 * 185.67799 * 25 24 3 41 41 H 1.08997 * 109.47591 * 305.68087 * 25 24 3 42 42 H 1.09003 * 109.46870 * 60.00205 * 26 24 3 43 43 H 1.08995 * 109.47194 * 180.02562 * 26 24 3 44 44 H 1.08996 * 109.47010 * 300.00162 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2264 2.0521 -0.1266 5 6 3.0122 1.4175 -1.1508 6 7 2.3143 1.2336 -2.4257 7 16 3.0418 1.6907 -3.8414 8 8 3.5013 3.0209 -3.6451 9 8 2.1527 1.3219 -4.8867 10 6 4.4797 0.6911 -4.0354 11 6 5.7297 1.2665 -4.0096 12 6 6.8623 0.4833 -4.1681 13 6 6.7512 -0.8877 -4.3428 14 6 5.5117 -1.4844 -4.3719 15 6 4.3545 -0.6985 -4.2178 16 6 3.0756 -1.3007 -4.2456 17 1 2.2597 -0.8616 -3.6906 18 6 2.8668 -2.4657 -4.9923 19 7 3.7419 -2.8304 -5.8938 20 14 1.3387 -3.5001 -4.7018 21 1 0.5134 -2.8757 -3.6369 22 1 0.5490 -3.5797 -5.9568 23 1 1.7387 -4.8669 -4.2811 24 6 2.7309 1.5428 1.3286 25 6 1.7066 1.5823 2.4644 26 6 3.7263 0.4081 1.5788 27 1 -0.3632 0.5946 0.8382 28 1 -0.3633 0.4284 -0.9341 29 1 -0.3633 -1.0232 0.0959 30 1 3.7781 0.6497 -1.0418 31 1 3.4794 2.4022 -1.1311 32 1 1.4261 0.8440 -2.4405 33 1 5.8283 2.3328 -3.8696 34 1 7.8391 0.9439 -4.1512 35 1 7.6406 -1.4890 -4.4605 36 1 5.4271 -2.5519 -4.5122 37 1 3.5974 -3.6381 -6.4112 38 1 3.2649 2.4922 1.2878 39 1 1.2439 0.6011 2.5706 40 1 2.2063 1.8511 3.3951 41 1 0.9399 2.3228 2.2367 42 1 4.4561 0.3800 0.7696 43 1 4.2394 0.5770 2.5255 44 1 3.1923 -0.5412 1.6197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601361212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:37 Heat of formation + Delta-G solvation = -139.292482 kcal Electronic energy + Delta-G solvation = -27363.265630 eV Core-core repulsion = 23599.001929 eV Total energy + Delta-G solvation = -3764.263701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.96560 -39.36315 -38.03061 -36.66808 -35.96267 -35.65526 -35.18438 -32.01887 -31.37472 -29.52492 -27.91542 -27.34537 -27.01450 -23.91303 -23.43823 -22.93391 -21.10816 -20.12773 -19.49266 -18.49564 -18.01946 -17.60891 -17.22991 -17.02614 -16.42834 -16.10179 -15.99507 -15.27100 -15.06723 -14.95276 -14.82315 -14.56658 -14.46855 -14.03742 -13.83487 -13.60569 -13.29878 -13.15550 -12.99421 -12.94880 -12.87233 -12.84846 -12.80485 -12.57486 -12.43865 -12.22015 -12.12288 -11.99992 -11.62909 -11.59795 -11.52665 -11.17475 -11.12595 -10.38809 -10.18078 -9.82838 -9.43129 -8.82193 -6.59044 -0.15863 0.54024 0.97016 1.35130 1.48268 1.51347 2.15619 2.33750 2.62526 2.90097 2.98541 3.47479 3.72091 3.90670 3.95014 4.04099 4.27781 4.33823 4.45675 4.49739 4.50393 4.59575 4.65259 4.71167 4.76246 4.78885 4.91070 4.93344 4.97165 5.07969 5.09939 5.13597 5.15127 5.28457 5.30813 5.48698 5.53155 5.56618 5.71146 5.81323 6.00326 6.09502 6.18891 6.36360 6.47949 6.68478 6.83812 8.16463 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.005795 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.248261 B = 4830.900448 C = 5836.495421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.390 6.390 3 C 0.090 3.910 4 H 0.084 0.916 5 C 0.108 3.892 6 N -1.107 6.107 7 S 2.720 3.280 8 O -1.007 7.007 9 O -1.000 7.000 10 C -0.793 4.793 11 C -0.015 4.015 12 C -0.251 4.251 13 C -0.074 4.074 14 C -0.187 4.187 15 C 0.165 3.835 16 C -0.474 4.474 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.806 5.806 20 Si 0.973 3.027 21 H -0.247 1.247 22 H -0.267 1.267 23 H -0.256 1.256 24 C -0.106 4.106 25 C -0.140 4.140 26 C -0.144 4.144 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.416 0.584 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.295 0.705 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.653 3.435 14.288 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.309 6.309 3 C 0.031 3.969 4 H 0.102 0.898 5 C -0.018 4.018 6 N -0.867 5.867 7 S 2.816 3.184 8 O -0.997 6.997 9 O -0.990 6.990 10 C -0.887 4.887 11 C -0.035 4.035 12 C -0.271 4.271 13 C -0.093 4.093 14 C -0.206 4.206 15 C 0.160 3.840 16 C -0.502 4.502 17 H 0.110 0.890 18 C -0.178 4.178 19 N -0.430 5.430 20 Si 0.792 3.208 21 H -0.170 1.170 22 H -0.192 1.192 23 H -0.180 1.180 24 C -0.125 4.125 25 C -0.198 4.198 26 C -0.201 4.201 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.251 0.749 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.635 3.859 13.543 14.826 hybrid contribution -0.324 -1.190 -0.375 1.290 sum -4.959 2.668 13.168 14.322 Atomic orbital electron populations 1.23054 0.80369 1.03553 1.00673 1.87969 1.20509 1.27554 1.94899 1.22440 0.95310 0.85710 0.93479 0.89756 1.21745 0.95724 1.02108 0.82194 1.55197 1.29314 1.81175 1.20985 1.00350 0.73382 0.72519 0.72128 1.93418 1.83111 1.36726 1.86472 1.93486 1.65561 1.84626 1.55368 1.30158 1.15632 1.07498 1.35378 1.20594 0.91703 0.98691 0.92502 1.20881 0.97849 0.94049 1.14281 1.21228 0.96892 0.95306 0.95858 1.21446 0.92490 0.99456 1.07254 1.17288 0.94030 0.89073 0.83563 1.20134 0.95939 1.08547 1.25607 0.88963 1.26796 1.01427 0.97522 0.92084 1.69841 1.36223 1.22267 1.14704 0.85279 0.77403 0.78154 0.79925 1.16980 1.19185 1.18015 1.21493 0.97264 1.00145 0.93633 1.21783 0.98466 1.01929 0.97597 1.21756 0.98470 0.98521 1.01367 0.92058 0.94096 0.89243 0.91930 0.88986 0.74859 0.85816 0.85381 0.85974 0.87481 0.89403 0.88922 0.92788 0.91418 0.92047 0.93660 0.91617 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.67 113.37 1.21 1.61 16 2 O -0.39 -10.21 8.75 -148.98 -1.30 -11.51 16 3 C 0.09 2.13 2.04 30.59 0.06 2.19 16 4 H 0.08 1.71 7.62 -2.39 -0.02 1.69 16 5 C 0.11 3.27 5.63 86.38 0.49 3.75 16 6 N -1.11 -39.34 5.05 -187.49 -0.95 -40.28 16 7 S 2.72 120.84 4.96 -56.49 -0.28 120.56 16 8 O -1.01 -45.24 16.48 -128.00 -2.11 -47.35 16 9 O -1.00 -51.23 16.59 -128.00 -2.12 -53.35 16 10 C -0.79 -38.63 5.91 22.73 0.13 -38.50 16 11 C -0.02 -0.69 9.53 22.22 0.21 -0.47 16 12 C -0.25 -10.63 10.05 22.46 0.23 -10.41 16 13 C -0.07 -3.30 10.02 22.22 0.22 -3.08 16 14 C -0.19 -9.49 8.66 22.73 0.20 -9.29 16 15 C 0.16 8.68 5.52 -21.29 -0.12 8.56 16 16 C -0.47 -24.68 7.60 23.46 0.18 -24.51 16 17 H 0.09 4.54 5.83 -2.91 -0.02 4.53 16 18 C 0.04 1.98 5.15 85.26 0.44 2.42 16 19 N -0.81 -41.21 11.15 21.83 0.24 -40.97 16 20 Si 0.97 37.45 29.59 68.60 2.03 39.48 16 21 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 24 C -0.11 -2.05 2.74 -10.79 -0.03 -2.08 16 25 C -0.14 -2.15 8.62 71.98 0.62 -1.53 16 26 C -0.14 -3.12 8.76 71.98 0.63 -2.49 16 27 H 0.06 0.94 7.62 -2.39 -0.02 0.92 16 28 H 0.04 0.81 8.05 -2.39 -0.02 0.79 16 29 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.06 2.06 6.69 -2.39 -0.02 2.05 16 31 H 0.09 2.58 7.77 -2.38 -0.02 2.56 16 32 H 0.42 13.71 8.10 -96.74 -0.78 12.92 16 33 H 0.12 5.06 7.33 -2.91 -0.02 5.03 16 34 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 36 H 0.11 5.57 6.44 -2.91 -0.02 5.55 16 37 H 0.30 13.45 8.30 -92.71 -0.77 12.68 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 0.89 7.88 -2.39 -0.02 0.87 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.04 1.11 6.64 -2.39 -0.02 1.09 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.05 1.26 7.53 -2.39 -0.02 1.24 16 Total: -1.00 -66.70 367.41 0.21 -66.49 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: 0.22 Total: 40.76 kcal Atomic # 6 Polarization: -78.31 SS G_CDS: 4.47 Total: -73.83 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -0.70 Total: -81.25 kcal Atomic # 8 Polarization: -106.68 SS G_CDS: -5.54 Total: -112.21 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 120.84 SS G_CDS: -0.28 Total: 120.56 kcal Total: -66.70 0.21 -66.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601361212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.798 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds