Wall clock time and date at job start Tue Mar 31 2020 15:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00160 * 2 1 4 4 H 1.08995 * 109.47105 * 32.03073 * 3 2 1 5 5 C 1.53004 * 109.47436 * 152.03528 * 3 2 1 6 6 N 1.46504 * 109.46507 * 299.99915 * 5 3 2 7 7 S 1.65604 * 119.99784 * 163.18723 * 6 5 3 8 8 O 1.42101 * 106.40308 * 309.88704 * 7 6 5 9 9 O 1.42097 * 106.40367 * 176.96218 * 7 6 5 10 10 C 1.76200 * 107.21886 * 63.42198 * 7 6 5 11 11 C 1.37629 * 120.13156 * 245.07203 * 10 7 6 12 12 C 1.38611 * 120.25207 * 180.29918 * 11 10 7 13 13 C 1.38666 * 120.49907 * 359.44192 * 12 11 10 14 14 C 1.37596 * 120.24435 * 0.55819 * 13 12 11 15 15 C 1.40697 * 120.12353 * 65.09119 * 10 7 6 16 16 C 1.41396 * 120.24695 * 359.95963 * 15 10 7 17 17 H 1.08000 * 119.99733 * 328.44883 * 16 15 10 18 18 C 1.39943 * 120.00438 * 148.45275 * 16 15 10 19 19 N 1.30831 * 119.99815 * 346.61519 * 18 16 15 20 20 Si 1.86793 * 120.00462 * 166.61368 * 18 16 15 21 21 H 1.48505 * 109.47249 * 89.99788 * 20 18 16 22 22 H 1.48495 * 109.47452 * 209.99907 * 20 18 16 23 23 H 1.48504 * 109.47225 * 330.00401 * 20 18 16 24 24 C 1.53001 * 109.47010 * 272.03090 * 3 2 1 25 25 C 1.53004 * 109.47336 * 177.15844 * 24 3 2 26 26 C 1.53002 * 109.47478 * 297.16038 * 24 3 2 27 27 H 1.08994 * 109.47187 * 304.86940 * 1 2 3 28 28 H 1.08998 * 109.46903 * 64.86708 * 1 2 3 29 29 H 1.08998 * 109.46831 * 184.86597 * 1 2 3 30 30 H 1.08998 * 109.47635 * 179.97438 * 5 3 2 31 31 H 1.09005 * 109.46976 * 59.99327 * 5 3 2 32 32 H 0.96996 * 120.00610 * 343.19146 * 6 5 3 33 33 H 1.08003 * 119.87625 * 0.02562 * 11 10 7 34 34 H 1.08002 * 119.75597 * 179.70327 * 12 11 10 35 35 H 1.08000 * 119.87466 * 180.30668 * 13 12 11 36 36 H 1.07998 * 120.12431 * 179.75446 * 14 13 12 37 37 H 0.96994 * 120.00325 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.47258 * 57.16027 * 24 3 2 39 39 H 1.09000 * 109.46797 * 59.99902 * 25 24 3 40 40 H 1.08996 * 109.47779 * 180.02562 * 25 24 3 41 41 H 1.08999 * 109.47088 * 300.00728 * 25 24 3 42 42 H 1.08997 * 109.47007 * 56.32940 * 26 24 3 43 43 H 1.08994 * 109.47248 * 176.33417 * 26 24 3 44 44 H 1.09001 * 109.46694 * 296.33309 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3622 1.9917 0.5450 5 6 3.3816 1.2532 0.6764 6 7 3.2277 0.7871 2.0568 7 16 4.5445 0.2363 2.8965 8 8 5.1873 -0.7131 2.0570 9 8 4.0863 -0.0688 4.2064 10 6 5.6606 1.5896 3.0625 11 6 6.8929 1.5479 2.4510 12 6 7.7753 2.6084 2.5850 13 6 7.4240 3.7269 3.3255 14 6 6.1973 3.7904 3.9455 15 6 5.2956 2.7170 3.8210 16 6 4.0321 2.7713 4.4534 17 1 3.1824 2.2778 4.0053 18 6 3.8826 3.4645 5.6599 19 7 4.9392 3.8361 6.3361 20 14 2.1746 3.8594 6.3048 21 1 1.7038 2.7491 7.1715 22 1 2.2216 5.1169 7.0932 23 1 1.2404 4.0258 5.1626 24 6 2.1710 1.7921 -1.4416 25 6 2.7273 3.2174 -1.4397 26 6 3.1366 0.8687 -2.1871 27 1 -0.3633 0.5875 0.8431 28 1 -0.3633 0.4365 -0.9304 29 1 -0.3633 -1.0240 0.0872 30 1 3.8252 2.2488 0.6760 31 1 4.0297 0.5668 0.1314 32 1 2.3545 0.8011 2.4790 33 1 7.1752 0.6836 1.8681 34 1 8.7422 2.5651 2.1057 35 1 8.1174 4.5496 3.4192 36 1 5.9273 4.6608 4.5250 37 1 4.8357 4.3169 7.1721 38 1 1.2011 1.7814 -1.9390 39 1 3.6972 3.2281 -0.9424 40 1 2.8414 3.5643 -2.4667 41 1 2.0394 3.8753 -0.9087 42 1 2.7732 -0.1575 -2.1325 43 1 3.2009 1.1763 -3.2307 44 1 4.1238 0.9293 -1.7289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601361214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:41 Heat of formation + Delta-G solvation = -117.896914 kcal Electronic energy + Delta-G solvation = -27300.719918 eV Core-core repulsion = 23537.383999 eV Total energy + Delta-G solvation = -3763.335919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.00790 -37.58772 -36.14601 -35.26343 -34.75418 -33.96951 -33.72068 -30.21755 -29.58296 -28.06309 -27.21235 -25.93301 -25.50915 -23.54587 -21.65276 -21.14371 -19.69827 -18.50470 -17.68507 -16.86741 -16.75370 -16.33166 -15.85156 -15.39020 -15.12237 -14.63634 -14.34175 -14.23360 -13.68366 -13.54387 -13.34519 -13.23543 -13.09758 -12.89873 -12.73405 -12.04878 -11.96765 -11.83371 -11.54683 -11.40864 -11.33357 -11.27311 -11.16441 -11.05460 -10.97462 -10.94664 -10.85299 -10.70753 -10.53746 -10.36116 -9.88117 -9.50033 -9.42338 -9.36996 -8.69286 -8.03251 -7.58942 -7.03096 -4.74640 1.59619 2.34289 2.72943 2.96348 2.99185 3.10900 3.75314 3.77892 3.99923 4.41643 4.67545 4.80455 4.82576 5.02551 5.20178 5.26923 5.30854 5.31469 5.41537 5.59241 5.63241 5.66894 5.69131 5.80948 5.82961 5.95292 6.00778 6.03666 6.05615 6.23465 6.29914 6.35592 6.39025 6.45612 6.79658 6.92900 7.08139 7.22513 7.31198 7.48752 7.57761 7.69018 7.79402 7.89783 8.27739 8.51661 8.64073 9.92678 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.005459 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.343265 B = 5127.635049 C = 5932.403792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.087 3.913 4 H 0.068 0.932 5 C 0.125 3.875 6 N -1.116 6.116 7 S 2.702 3.298 8 O -0.997 6.997 9 O -0.964 6.964 10 C -0.774 4.774 11 C -0.003 4.003 12 C -0.249 4.249 13 C -0.076 4.076 14 C -0.157 4.157 15 C 0.190 3.810 16 C -0.452 4.452 17 H 0.087 0.913 18 C 0.083 3.917 19 N -0.777 5.777 20 Si 0.912 3.088 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.115 4.115 25 C -0.153 4.153 26 C -0.149 4.149 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.410 0.590 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.287 0.713 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 0.935 -11.059 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.291 6.291 3 C 0.027 3.973 4 H 0.086 0.914 5 C -0.001 4.001 6 N -0.873 5.873 7 S 2.799 3.201 8 O -0.987 6.987 9 O -0.955 6.955 10 C -0.869 4.869 11 C -0.023 4.023 12 C -0.269 4.269 13 C -0.094 4.094 14 C -0.177 4.177 15 C 0.186 3.814 16 C -0.480 4.480 17 H 0.105 0.895 18 C -0.139 4.139 19 N -0.400 5.400 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.134 4.134 25 C -0.210 4.210 26 C -0.206 4.206 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.243 0.757 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.064 -0.015 -10.616 12.751 hybrid contribution -0.945 1.290 0.523 1.683 sum -8.008 1.275 -10.093 12.947 Atomic orbital electron populations 1.22786 0.81739 1.02566 0.99708 1.87993 1.18957 1.27302 1.94845 1.22436 0.94944 0.84899 0.94992 0.91400 1.21393 0.96357 1.00662 0.81718 1.55510 1.25163 1.83987 1.22609 1.01046 0.72724 0.73894 0.72411 1.93446 1.75984 1.59958 1.69328 1.93541 1.80759 1.84095 1.37078 1.29968 1.12622 1.19270 1.25012 1.20278 0.91966 0.96338 0.93724 1.20492 0.99972 0.97124 1.09352 1.20891 0.96027 0.96504 0.96022 1.21380 0.94672 0.99489 1.02129 1.16984 0.91853 0.87591 0.84994 1.19792 0.95566 1.27937 1.04720 0.89491 1.25905 0.99261 0.92549 0.96136 1.69785 1.31374 1.26542 1.12298 0.86222 0.81548 0.78828 0.79838 1.18685 1.19827 1.18073 1.21563 1.00062 0.95923 0.95878 1.21923 1.01945 0.95163 1.02016 1.21849 0.99541 0.99905 0.99286 0.93983 0.94439 0.89841 0.90235 0.89740 0.75695 0.87364 0.88701 0.88818 0.86405 0.90173 0.91100 0.91507 0.92421 0.92500 0.91778 0.93047 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.86 101.05 1.10 1.39 16 2 O -0.37 -5.04 9.60 -35.23 -0.34 -5.38 16 3 C 0.09 1.10 1.99 -26.73 -0.05 1.05 16 4 H 0.07 0.80 7.74 -51.93 -0.40 0.40 16 5 C 0.13 1.94 5.19 -4.04 -0.02 1.92 16 6 N -1.12 -20.09 4.95 -10.61 -0.05 -20.14 16 7 S 2.70 60.41 4.96 -107.50 -0.53 59.88 16 8 O -1.00 -23.33 16.47 -57.17 -0.94 -24.27 16 9 O -0.96 -24.54 16.62 -57.17 -0.95 -25.49 16 10 C -0.77 -18.48 5.91 -38.88 -0.23 -18.71 16 11 C 0.00 -0.07 9.53 -39.67 -0.38 -0.45 16 12 C -0.25 -5.39 10.05 -39.29 -0.39 -5.79 16 13 C -0.08 -1.67 10.02 -39.66 -0.40 -2.07 16 14 C -0.16 -3.83 8.64 -38.87 -0.34 -4.16 16 15 C 0.19 4.80 5.50 -106.82 -0.59 4.22 16 16 C -0.45 -11.23 7.53 -37.74 -0.28 -11.52 16 17 H 0.09 2.01 5.95 -52.49 -0.31 1.70 16 18 C 0.08 1.99 5.18 -17.34 -0.09 1.90 16 19 N -0.78 -19.20 11.19 55.55 0.62 -18.58 16 20 Si 0.91 17.88 29.58 -169.99 -5.03 12.85 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 C -0.11 -1.23 2.88 -90.62 -0.26 -1.49 16 25 C -0.15 -1.55 8.91 37.16 0.33 -1.22 16 26 C -0.15 -1.64 8.57 37.16 0.32 -1.32 16 27 H 0.04 0.40 7.97 -51.93 -0.41 -0.02 16 28 H 0.04 0.32 7.75 -51.93 -0.40 -0.08 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.19 6.50 -51.93 -0.34 0.85 16 31 H 0.08 1.35 6.07 -51.93 -0.32 1.04 16 32 H 0.41 6.72 8.47 -34.47 -0.29 6.42 16 33 H 0.11 2.27 7.33 -52.48 -0.38 1.89 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.12 2.89 6.55 -52.49 -0.34 2.55 16 37 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 38 H 0.07 0.69 7.75 -51.93 -0.40 0.28 16 39 H 0.07 0.73 6.50 -51.93 -0.34 0.40 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.75 7.66 -51.93 -0.40 0.36 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.73 6.59 -51.93 -0.34 0.39 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -30.92 365.26 -9.36 -40.28 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.35 Total: 11.60 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: -1.29 Total: -36.26 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.57 Total: -38.72 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -2.23 Total: -55.14 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 60.41 SS G_CDS: -0.53 Total: 59.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.92 -9.36 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601361214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.617 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds