Wall clock time and date at job start Tue Mar 31 2020 15:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00160 * 2 1 4 4 H 1.08995 * 109.47105 * 32.03073 * 3 2 1 5 5 C 1.53004 * 109.47436 * 152.03528 * 3 2 1 6 6 N 1.46504 * 109.46507 * 299.99915 * 5 3 2 7 7 S 1.65604 * 119.99784 * 163.18723 * 6 5 3 8 8 O 1.42101 * 106.40308 * 309.88704 * 7 6 5 9 9 O 1.42097 * 106.40367 * 176.96218 * 7 6 5 10 10 C 1.76200 * 107.21886 * 63.42198 * 7 6 5 11 11 C 1.37629 * 120.13156 * 245.07203 * 10 7 6 12 12 C 1.38611 * 120.25207 * 180.29918 * 11 10 7 13 13 C 1.38666 * 120.49907 * 359.44192 * 12 11 10 14 14 C 1.37596 * 120.24435 * 0.55819 * 13 12 11 15 15 C 1.40697 * 120.12353 * 65.09119 * 10 7 6 16 16 C 1.41396 * 120.24695 * 359.95963 * 15 10 7 17 17 H 1.08000 * 119.99733 * 328.44883 * 16 15 10 18 18 C 1.39943 * 120.00438 * 148.45275 * 16 15 10 19 19 N 1.30831 * 119.99815 * 346.61519 * 18 16 15 20 20 Si 1.86793 * 120.00462 * 166.61368 * 18 16 15 21 21 H 1.48505 * 109.47249 * 89.99788 * 20 18 16 22 22 H 1.48495 * 109.47452 * 209.99907 * 20 18 16 23 23 H 1.48504 * 109.47225 * 330.00401 * 20 18 16 24 24 C 1.53001 * 109.47010 * 272.03090 * 3 2 1 25 25 C 1.53004 * 109.47336 * 177.15844 * 24 3 2 26 26 C 1.53002 * 109.47478 * 297.16038 * 24 3 2 27 27 H 1.08994 * 109.47187 * 304.86940 * 1 2 3 28 28 H 1.08998 * 109.46903 * 64.86708 * 1 2 3 29 29 H 1.08998 * 109.46831 * 184.86597 * 1 2 3 30 30 H 1.08998 * 109.47635 * 179.97438 * 5 3 2 31 31 H 1.09005 * 109.46976 * 59.99327 * 5 3 2 32 32 H 0.96996 * 120.00610 * 343.19146 * 6 5 3 33 33 H 1.08003 * 119.87625 * 0.02562 * 11 10 7 34 34 H 1.08002 * 119.75597 * 179.70327 * 12 11 10 35 35 H 1.08000 * 119.87466 * 180.30668 * 13 12 11 36 36 H 1.07998 * 120.12431 * 179.75446 * 14 13 12 37 37 H 0.96994 * 120.00325 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.47258 * 57.16027 * 24 3 2 39 39 H 1.09000 * 109.46797 * 59.99902 * 25 24 3 40 40 H 1.08996 * 109.47779 * 180.02562 * 25 24 3 41 41 H 1.08999 * 109.47088 * 300.00728 * 25 24 3 42 42 H 1.08997 * 109.47007 * 56.32940 * 26 24 3 43 43 H 1.08994 * 109.47248 * 176.33417 * 26 24 3 44 44 H 1.09001 * 109.46694 * 296.33309 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3622 1.9917 0.5450 5 6 3.3816 1.2532 0.6764 6 7 3.2277 0.7871 2.0568 7 16 4.5445 0.2363 2.8965 8 8 5.1873 -0.7131 2.0570 9 8 4.0863 -0.0688 4.2064 10 6 5.6606 1.5896 3.0625 11 6 6.8929 1.5479 2.4510 12 6 7.7753 2.6084 2.5850 13 6 7.4240 3.7269 3.3255 14 6 6.1973 3.7904 3.9455 15 6 5.2956 2.7170 3.8210 16 6 4.0321 2.7713 4.4534 17 1 3.1824 2.2778 4.0053 18 6 3.8826 3.4645 5.6599 19 7 4.9392 3.8361 6.3361 20 14 2.1746 3.8594 6.3048 21 1 1.7038 2.7491 7.1715 22 1 2.2216 5.1169 7.0932 23 1 1.2404 4.0258 5.1626 24 6 2.1710 1.7921 -1.4416 25 6 2.7273 3.2174 -1.4397 26 6 3.1366 0.8687 -2.1871 27 1 -0.3633 0.5875 0.8431 28 1 -0.3633 0.4365 -0.9304 29 1 -0.3633 -1.0240 0.0872 30 1 3.8252 2.2488 0.6760 31 1 4.0297 0.5668 0.1314 32 1 2.3545 0.8011 2.4790 33 1 7.1752 0.6836 1.8681 34 1 8.7422 2.5651 2.1057 35 1 8.1174 4.5496 3.4192 36 1 5.9273 4.6608 4.5250 37 1 4.8357 4.3169 7.1721 38 1 1.2011 1.7814 -1.9390 39 1 3.6972 3.2281 -0.9424 40 1 2.8414 3.5643 -2.4667 41 1 2.0394 3.8753 -0.9087 42 1 2.7732 -0.1575 -2.1325 43 1 3.2009 1.1763 -3.2307 44 1 4.1238 0.9293 -1.7289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601361214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:41 Heat of formation + Delta-G solvation = -138.444358 kcal Electronic energy + Delta-G solvation = -27301.610922 eV Core-core repulsion = 23537.383999 eV Total energy + Delta-G solvation = -3764.226923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.99591 -39.37061 -38.00853 -36.64492 -36.29176 -35.65356 -35.05741 -32.01251 -31.37956 -29.10883 -28.05323 -27.33840 -26.82946 -24.62030 -23.43902 -22.93980 -20.75662 -20.09994 -19.48298 -18.47305 -18.09014 -17.62428 -17.25799 -17.08926 -16.26320 -16.09904 -15.98852 -15.25731 -15.08091 -14.96659 -14.83218 -14.61687 -14.44817 -14.24377 -13.76374 -13.69421 -13.28930 -13.11099 -12.97841 -12.93584 -12.85825 -12.80303 -12.78504 -12.61188 -12.44532 -12.24662 -12.14288 -12.03844 -11.71131 -11.63016 -11.35791 -11.17947 -11.12394 -10.44839 -10.14671 -9.83193 -9.41091 -8.79509 -6.59641 -0.15044 0.53388 0.97589 1.36619 1.48202 1.52399 2.16523 2.36148 2.64777 2.83438 3.02860 3.46885 3.69845 3.85139 3.94549 4.10497 4.33419 4.35621 4.37265 4.49605 4.50690 4.56526 4.63640 4.68921 4.72958 4.74802 4.86691 4.91419 4.97877 5.07070 5.11888 5.13534 5.13985 5.24179 5.30222 5.47840 5.51482 5.52742 5.71286 5.81297 5.99830 6.09442 6.22197 6.33830 6.47317 6.69565 6.83096 8.19314 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.005459 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.343265 B = 5127.635049 C = 5932.403792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.090 3.910 4 H 0.079 0.921 5 C 0.118 3.882 6 N -1.105 6.105 7 S 2.719 3.281 8 O -1.011 7.011 9 O -1.000 7.000 10 C -0.789 4.789 11 C -0.017 4.017 12 C -0.247 4.247 13 C -0.073 4.073 14 C -0.182 4.182 15 C 0.167 3.833 16 C -0.480 4.480 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.811 5.811 20 Si 0.973 3.027 21 H -0.269 1.269 22 H -0.260 1.260 23 H -0.241 1.241 24 C -0.108 4.108 25 C -0.153 4.153 26 C -0.149 4.149 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.418 0.582 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.295 0.705 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 1.779 -12.382 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.316 6.316 3 C 0.030 3.970 4 H 0.097 0.903 5 C -0.008 4.008 6 N -0.865 5.865 7 S 2.815 3.185 8 O -1.001 7.001 9 O -0.991 6.991 10 C -0.883 4.883 11 C -0.037 4.037 12 C -0.267 4.267 13 C -0.092 4.092 14 C -0.202 4.202 15 C 0.163 3.837 16 C -0.508 4.508 17 H 0.112 0.888 18 C -0.178 4.178 19 N -0.435 5.435 20 Si 0.792 3.208 21 H -0.194 1.194 22 H -0.184 1.184 23 H -0.164 1.164 24 C -0.128 4.128 25 C -0.210 4.210 26 C -0.206 4.206 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.253 0.747 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.126 0.835 -11.950 14.475 hybrid contribution -0.527 0.980 0.846 1.398 sum -8.653 1.815 -11.104 14.194 Atomic orbital electron populations 1.22985 0.79981 1.03533 1.00930 1.87955 1.20943 1.27667 1.95075 1.22425 0.93286 0.85120 0.96133 0.90334 1.21623 0.98537 1.00410 0.80206 1.55123 1.24167 1.83765 1.23448 1.00352 0.72927 0.73487 0.71688 1.93418 1.76751 1.60573 1.69377 1.93483 1.81410 1.84757 1.39422 1.30177 1.13722 1.19248 1.25155 1.20589 0.91880 0.97328 0.93909 1.20897 1.01006 0.96279 1.08497 1.21247 0.95618 0.97552 0.94792 1.21442 0.95966 0.99370 1.03428 1.17288 0.92578 0.88231 0.85651 1.20096 0.95915 1.29217 1.05605 0.88821 1.26779 1.02984 0.91977 0.96012 1.69826 1.33321 1.27333 1.12986 0.85329 0.77088 0.78726 0.79621 1.19359 1.18386 1.16412 1.21537 1.00886 0.95945 0.94401 1.21925 1.01269 0.94896 1.02933 1.21848 0.98880 0.99536 1.00362 0.93391 0.92648 0.89020 0.89945 0.90548 0.74675 0.86098 0.85370 0.85812 0.87371 0.89455 0.89284 0.92895 0.90905 0.91937 0.92787 0.91280 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.86 113.37 1.23 1.63 16 2 O -0.40 -10.21 9.60 -148.98 -1.43 -11.64 16 3 C 0.09 2.16 1.99 30.60 0.06 2.22 16 4 H 0.08 1.71 7.74 -2.39 -0.02 1.69 16 5 C 0.12 3.62 5.19 86.38 0.45 4.07 16 6 N -1.10 -39.80 4.95 -187.47 -0.93 -40.73 16 7 S 2.72 123.24 4.96 -56.49 -0.28 122.96 16 8 O -1.01 -47.72 16.47 -128.00 -2.11 -49.83 16 9 O -1.00 -52.02 16.62 -128.00 -2.13 -54.15 16 10 C -0.79 -38.08 5.91 22.73 0.13 -37.94 16 11 C -0.02 -0.78 9.53 22.21 0.21 -0.57 16 12 C -0.25 -10.28 10.05 22.46 0.23 -10.05 16 13 C -0.07 -3.17 10.02 22.22 0.22 -2.95 16 14 C -0.18 -8.98 8.64 22.73 0.20 -8.78 16 15 C 0.17 8.56 5.50 -21.29 -0.12 8.44 16 16 C -0.48 -24.24 7.53 23.46 0.18 -24.06 16 17 H 0.09 4.39 5.95 -2.91 -0.02 4.38 16 18 C 0.04 1.95 5.18 85.26 0.44 2.39 16 19 N -0.81 -40.72 11.19 21.83 0.24 -40.48 16 20 Si 0.97 36.28 29.58 68.60 2.03 38.31 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 23 H -0.24 -8.28 7.11 99.48 0.71 -7.57 16 24 C -0.11 -2.10 2.88 -10.79 -0.03 -2.13 16 25 C -0.15 -2.79 8.91 71.98 0.64 -2.15 16 26 C -0.15 -3.08 8.57 71.98 0.62 -2.47 16 27 H 0.05 0.80 7.97 -2.39 -0.02 0.79 16 28 H 0.05 0.80 7.75 -2.39 -0.02 0.78 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 2.47 6.50 -2.39 -0.02 2.45 16 31 H 0.08 2.46 6.07 -2.38 -0.01 2.45 16 32 H 0.42 13.62 8.47 -96.75 -0.82 12.80 16 33 H 0.12 5.01 7.33 -2.91 -0.02 4.99 16 34 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 35 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.11 5.44 6.55 -2.91 -0.02 5.42 16 37 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 38 H 0.09 1.45 7.75 -2.39 -0.02 1.43 16 39 H 0.05 1.11 6.50 -2.39 -0.02 1.09 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 1.22 7.66 -2.39 -0.02 1.20 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.05 1.14 6.59 -2.39 -0.02 1.12 16 Total: -1.00 -66.67 365.26 0.06 -66.61 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: 0.20 Total: 41.30 kcal Atomic # 6 Polarization: -76.81 SS G_CDS: 4.46 Total: -72.35 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -0.68 Total: -81.21 kcal Atomic # 8 Polarization: -109.96 SS G_CDS: -5.67 Total: -115.62 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: 123.24 SS G_CDS: -0.28 Total: 122.96 kcal Total: -66.67 0.06 -66.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601361214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.831 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds