Wall clock time and date at job start Tue Mar 31 2020 15:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99475 * 2 1 4 4 C 1.53009 * 109.46724 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47023 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47095 * 59.99804 * 5 4 3 7 7 C 1.52998 * 109.47396 * 300.00410 * 5 4 3 8 8 N 1.46502 * 109.47111 * 179.97438 * 5 4 3 9 9 S 1.65605 * 120.00162 * 187.27029 * 8 5 4 10 10 O 1.42097 * 106.40332 * 180.18709 * 9 8 5 11 11 O 1.42106 * 106.39612 * 313.10617 * 9 8 5 12 12 C 1.76196 * 107.22063 * 66.64330 * 9 8 5 13 13 C 1.37636 * 120.13057 * 243.23294 * 12 9 8 14 14 C 1.38612 * 120.25024 * 179.97438 * 13 12 9 15 15 C 1.38656 * 120.50077 * 0.02562 * 14 13 12 16 16 C 1.37591 * 120.24947 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12454 * 62.95539 * 12 9 8 18 18 C 1.41389 * 120.24782 * 359.97438 * 17 12 9 19 19 H 1.07999 * 119.99735 * 330.52497 * 18 17 12 20 20 C 1.39943 * 120.00285 * 150.52575 * 18 17 12 21 21 N 1.30823 * 119.99845 * 348.20499 * 20 18 17 22 22 Si 1.86805 * 120.00128 * 168.20961 * 20 18 17 23 23 H 1.48499 * 109.46997 * 59.99577 * 22 20 18 24 24 H 1.48504 * 109.47163 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46903 * 299.99861 * 22 20 18 26 26 H 1.09006 * 109.47087 * 299.99401 * 1 2 3 27 27 H 1.08999 * 109.47462 * 60.00160 * 1 2 3 28 28 H 1.08999 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47521 * 60.00468 * 3 2 1 30 30 H 1.08998 * 109.47503 * 299.99825 * 3 2 1 31 31 H 1.08999 * 109.46927 * 59.99875 * 4 3 2 32 32 H 1.08998 * 109.46800 * 300.00026 * 4 3 2 33 33 H 1.09004 * 109.47379 * 187.68496 * 6 5 4 34 34 H 1.08993 * 109.47533 * 307.69296 * 6 5 4 35 35 H 1.09010 * 109.46944 * 67.69700 * 6 5 4 36 36 H 1.09004 * 109.46530 * 292.93271 * 7 5 4 37 37 H 1.08997 * 109.47445 * 52.93357 * 7 5 4 38 38 H 1.08996 * 109.47090 * 172.93795 * 7 5 4 39 39 H 0.96994 * 120.00159 * 7.54201 * 8 5 4 40 40 H 1.08000 * 119.87503 * 0.02562 * 13 12 9 41 41 H 1.08007 * 119.74843 * 179.97438 * 14 13 12 42 42 H 1.08008 * 119.87427 * 179.97438 * 15 14 13 43 43 H 1.07999 * 120.13058 * 179.97438 * 16 15 14 44 44 H 0.97005 * 119.99464 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 3.7067 3.3420 1.2480 7 6 3.7056 3.3414 -1.2504 8 7 5.6181 2.4668 -0.0013 9 16 6.5559 3.8197 0.1796 10 8 7.9066 3.3809 0.1330 11 8 6.0252 4.7969 -0.7052 12 6 6.2860 4.4272 1.8113 13 6 5.7235 5.6687 2.0021 14 6 5.5096 6.1488 3.2847 15 6 5.8591 5.3865 4.3889 16 6 6.4238 4.1430 4.2220 17 6 6.6393 3.6424 2.9244 18 6 7.2120 2.3628 2.7407 19 1 6.9662 1.7821 1.8639 20 6 8.0972 1.8488 3.6950 21 7 8.5751 2.6282 4.6307 22 14 8.5965 0.0498 3.6326 23 1 9.2620 -0.2345 2.3358 24 1 9.5358 -0.2422 4.7451 25 1 7.3888 -0.8040 3.7668 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8567 0.6439 -0.8908 32 1 3.8574 0.6436 0.8891 33 1 4.0363 4.3789 1.1815 34 1 2.6196 3.3102 1.3199 35 1 4.1432 2.8782 2.1326 36 1 4.1323 2.8703 -2.1360 37 1 2.6178 3.3191 -1.3154 38 1 4.0448 4.3755 -1.1899 39 1 6.0359 1.5984 -0.1112 40 1 5.4469 6.2709 1.1492 41 1 5.0680 7.1245 3.4250 42 1 5.6883 5.7707 5.3838 43 1 6.6957 3.5510 5.0834 44 1 9.1890 2.2719 5.2919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601363146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:33 Heat of formation + Delta-G solvation = -107.588326 kcal Electronic energy + Delta-G solvation = -27643.807979 eV Core-core repulsion = 23880.919074 eV Total energy + Delta-G solvation = -3762.888905 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.72437 -37.68673 -37.05851 -36.08162 -34.81334 -33.89402 -31.44862 -30.28748 -29.69766 -28.74410 -26.89421 -26.35799 -25.50456 -23.63006 -21.62567 -21.15630 -19.52028 -18.37662 -17.69917 -17.12253 -16.55360 -16.08230 -16.03017 -15.43922 -15.21631 -14.82838 -14.39466 -14.10958 -13.97260 -13.39835 -13.25795 -13.22406 -13.02697 -12.74133 -12.34893 -12.06678 -11.93195 -11.70791 -11.57623 -11.39850 -11.23945 -11.17025 -11.06224 -11.04086 -10.94347 -10.89881 -10.72781 -10.61951 -10.52388 -10.14868 -9.91086 -9.66467 -9.45286 -9.40240 -8.77930 -7.95779 -7.58279 -7.02208 -4.75884 1.56272 2.34538 2.73600 2.97045 3.00185 3.12442 3.62498 3.78251 3.96513 4.41339 4.73910 4.97335 5.02165 5.06782 5.20044 5.22789 5.28303 5.38901 5.40698 5.47433 5.55541 5.62895 5.76885 5.93950 6.01582 6.04292 6.14872 6.21964 6.23684 6.31640 6.39356 6.55035 6.73098 6.79037 6.82610 6.94977 7.08495 7.09922 7.30483 7.48540 7.57800 7.68760 7.80399 7.89397 8.28443 8.50917 8.64811 9.91084 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.005592 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.531813 B = 5006.046283 C = 5838.882762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.059 3.941 4 C -0.116 4.116 5 C 0.191 3.809 6 C -0.187 4.187 7 C -0.182 4.182 8 N -1.113 6.113 9 S 2.701 3.299 10 O -0.968 6.968 11 O -0.995 6.995 12 C -0.768 4.768 13 C -0.004 4.004 14 C -0.248 4.248 15 C -0.078 4.078 16 C -0.156 4.156 17 C 0.190 3.810 18 C -0.450 4.450 19 H 0.086 0.914 20 C 0.082 3.918 21 N -0.777 5.777 22 Si 0.911 3.089 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.259 1.259 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.411 0.589 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 -3.729 -4.520 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.018 4.018 4 C -0.154 4.154 5 C 0.102 3.898 6 C -0.245 4.245 7 C -0.241 4.241 8 N -0.869 5.869 9 S 2.799 3.201 10 O -0.959 6.959 11 O -0.986 6.986 12 C -0.863 4.863 13 C -0.024 4.024 14 C -0.268 4.268 15 C -0.097 4.097 16 C -0.176 4.176 17 C 0.185 3.815 18 C -0.478 4.478 19 H 0.104 0.896 20 C -0.139 4.139 21 N -0.400 5.400 22 Si 0.734 3.266 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.183 1.183 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.245 0.755 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.140 0.860 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.517 -3.376 -4.982 12.117 hybrid contribution -0.017 -0.826 0.891 1.215 sum -10.534 -4.202 -4.091 12.057 Atomic orbital electron populations 1.22713 0.81321 1.02502 0.99913 1.87863 1.19442 1.28490 1.95443 1.22765 0.93938 0.84331 1.00796 1.21684 0.93059 0.96594 1.04101 1.19818 0.79606 0.94788 0.95549 1.22770 1.01572 1.02150 0.97989 1.22703 1.00864 1.03371 0.97127 1.55805 1.14804 1.25474 1.90834 1.01052 0.72399 0.72133 0.74523 1.93540 1.33118 1.81282 1.87918 1.93417 1.80358 1.60216 1.64565 1.29862 1.30575 1.06545 1.19327 1.20184 0.92739 0.92919 0.96522 1.20468 1.12827 1.00647 0.92866 1.20883 0.97070 0.94992 0.96709 1.21478 1.02042 0.96208 0.97849 1.16939 0.84120 0.90336 0.90100 1.19805 1.21295 1.00711 1.06021 0.89586 1.25920 0.94244 1.00362 0.93415 1.69772 1.21775 1.36879 1.11607 0.86277 0.79535 0.81135 0.79615 1.18076 1.19930 1.18329 0.94093 0.94223 0.89861 0.92465 0.92746 0.90656 0.89944 0.90562 0.91764 0.90150 0.92255 0.92137 0.89000 0.75546 0.87498 0.88860 0.88955 0.85967 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.93 10.70 -35.23 -0.38 -5.30 16 3 C 0.06 0.69 5.26 37.16 0.20 0.88 16 4 C -0.12 -1.51 4.76 -26.73 -0.13 -1.64 16 5 C 0.19 2.87 0.91 -131.82 -0.12 2.75 16 6 C -0.19 -2.97 6.97 37.16 0.26 -2.71 16 7 C -0.18 -2.58 7.99 37.16 0.30 -2.28 16 8 N -1.11 -19.31 4.56 0.54 0.00 -19.31 16 9 S 2.70 58.14 4.62 -107.50 -0.50 57.64 16 10 O -0.97 -24.24 16.77 -57.17 -0.96 -25.19 16 11 O -1.00 -21.61 14.05 -57.17 -0.80 -22.42 16 12 C -0.77 -17.60 3.61 -38.87 -0.14 -17.74 16 13 C 0.00 -0.08 7.72 -39.66 -0.31 -0.39 16 14 C -0.25 -5.21 10.05 -39.29 -0.39 -5.60 16 15 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 16 C -0.16 -3.74 8.66 -38.87 -0.34 -4.08 16 17 C 0.19 4.65 4.97 -106.82 -0.53 4.12 16 18 C -0.45 -11.00 7.66 -37.75 -0.29 -11.29 16 19 H 0.09 1.96 5.64 -52.49 -0.30 1.66 16 20 C 0.08 1.94 5.23 -17.34 -0.09 1.85 16 21 N -0.78 -18.95 10.93 55.55 0.61 -18.35 16 22 Si 0.91 17.88 29.58 -169.99 -5.03 12.85 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.64 6.27 -51.93 -0.33 0.32 16 30 H 0.05 0.57 6.28 -51.93 -0.33 0.24 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.32 4.89 -51.93 -0.25 1.07 16 34 H 0.06 0.84 6.05 -51.93 -0.31 0.52 16 35 H 0.08 1.42 7.29 -51.92 -0.38 1.04 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.69 6.08 -51.93 -0.32 0.38 16 38 H 0.09 1.50 5.88 -51.93 -0.31 1.19 16 39 H 0.41 6.45 8.23 -34.47 -0.28 6.17 16 40 H 0.11 2.15 7.33 -52.49 -0.38 1.76 16 41 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 42 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.12 2.98 6.30 -52.49 -0.33 2.65 16 44 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -29.69 350.85 -8.67 -38.35 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.03 Total: 13.24 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: -0.87 Total: -36.81 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.61 Total: -37.66 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -2.14 Total: -52.92 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 58.14 SS G_CDS: -0.50 Total: 57.64 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.69 -8.67 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601363146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.235 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds