Wall clock time and date at job start Tue Mar 31 2020 15:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99475 * 2 1 4 4 C 1.53009 * 109.46724 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47023 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47095 * 59.99804 * 5 4 3 7 7 C 1.52998 * 109.47396 * 300.00410 * 5 4 3 8 8 N 1.46502 * 109.47111 * 179.97438 * 5 4 3 9 9 S 1.65605 * 120.00162 * 187.27029 * 8 5 4 10 10 O 1.42097 * 106.40332 * 180.18709 * 9 8 5 11 11 O 1.42106 * 106.39612 * 313.10617 * 9 8 5 12 12 C 1.76196 * 107.22063 * 66.64330 * 9 8 5 13 13 C 1.37636 * 120.13057 * 243.23294 * 12 9 8 14 14 C 1.38612 * 120.25024 * 179.97438 * 13 12 9 15 15 C 1.38656 * 120.50077 * 0.02562 * 14 13 12 16 16 C 1.37591 * 120.24947 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12454 * 62.95539 * 12 9 8 18 18 C 1.41389 * 120.24782 * 359.97438 * 17 12 9 19 19 H 1.07999 * 119.99735 * 330.52497 * 18 17 12 20 20 C 1.39943 * 120.00285 * 150.52575 * 18 17 12 21 21 N 1.30823 * 119.99845 * 348.20499 * 20 18 17 22 22 Si 1.86805 * 120.00128 * 168.20961 * 20 18 17 23 23 H 1.48499 * 109.46997 * 59.99577 * 22 20 18 24 24 H 1.48504 * 109.47163 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46903 * 299.99861 * 22 20 18 26 26 H 1.09006 * 109.47087 * 299.99401 * 1 2 3 27 27 H 1.08999 * 109.47462 * 60.00160 * 1 2 3 28 28 H 1.08999 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47521 * 60.00468 * 3 2 1 30 30 H 1.08998 * 109.47503 * 299.99825 * 3 2 1 31 31 H 1.08999 * 109.46927 * 59.99875 * 4 3 2 32 32 H 1.08998 * 109.46800 * 300.00026 * 4 3 2 33 33 H 1.09004 * 109.47379 * 187.68496 * 6 5 4 34 34 H 1.08993 * 109.47533 * 307.69296 * 6 5 4 35 35 H 1.09010 * 109.46944 * 67.69700 * 6 5 4 36 36 H 1.09004 * 109.46530 * 292.93271 * 7 5 4 37 37 H 1.08997 * 109.47445 * 52.93357 * 7 5 4 38 38 H 1.08996 * 109.47090 * 172.93795 * 7 5 4 39 39 H 0.96994 * 120.00159 * 7.54201 * 8 5 4 40 40 H 1.08000 * 119.87503 * 0.02562 * 13 12 9 41 41 H 1.08007 * 119.74843 * 179.97438 * 14 13 12 42 42 H 1.08008 * 119.87427 * 179.97438 * 15 14 13 43 43 H 1.07999 * 120.13058 * 179.97438 * 16 15 14 44 44 H 0.97005 * 119.99464 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 3.7067 3.3420 1.2480 7 6 3.7056 3.3414 -1.2504 8 7 5.6181 2.4668 -0.0013 9 16 6.5559 3.8197 0.1796 10 8 7.9066 3.3809 0.1330 11 8 6.0252 4.7969 -0.7052 12 6 6.2860 4.4272 1.8113 13 6 5.7235 5.6687 2.0021 14 6 5.5096 6.1488 3.2847 15 6 5.8591 5.3865 4.3889 16 6 6.4238 4.1430 4.2220 17 6 6.6393 3.6424 2.9244 18 6 7.2120 2.3628 2.7407 19 1 6.9662 1.7821 1.8639 20 6 8.0972 1.8488 3.6950 21 7 8.5751 2.6282 4.6307 22 14 8.5965 0.0498 3.6326 23 1 9.2620 -0.2345 2.3358 24 1 9.5358 -0.2422 4.7451 25 1 7.3888 -0.8040 3.7668 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8567 0.6439 -0.8908 32 1 3.8574 0.6436 0.8891 33 1 4.0363 4.3789 1.1815 34 1 2.6196 3.3102 1.3199 35 1 4.1432 2.8782 2.1326 36 1 4.1323 2.8703 -2.1360 37 1 2.6178 3.3191 -1.3154 38 1 4.0448 4.3755 -1.1899 39 1 6.0359 1.5984 -0.1112 40 1 5.4469 6.2709 1.1492 41 1 5.0680 7.1245 3.4250 42 1 5.6883 5.7707 5.3838 43 1 6.6957 3.5510 5.0834 44 1 9.1890 2.2719 5.2919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601363146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:32 Heat of formation + Delta-G solvation = -127.536385 kcal Electronic energy + Delta-G solvation = -27644.672992 eV Core-core repulsion = 23880.919074 eV Total energy + Delta-G solvation = -3763.753918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.87677 -39.31312 -38.25686 -37.71631 -36.62232 -35.64526 -32.71351 -32.02284 -31.41100 -29.87370 -28.11321 -27.28634 -27.12152 -24.64886 -23.35932 -22.91498 -20.77722 -19.98438 -19.46727 -18.47638 -18.03183 -17.50764 -17.11089 -16.93320 -16.56660 -16.02030 -15.92215 -15.47507 -15.12759 -15.06357 -14.90171 -14.51970 -14.41786 -14.13517 -13.84234 -13.49033 -13.30829 -13.04755 -12.99666 -12.90058 -12.83025 -12.75916 -12.56686 -12.46600 -12.28048 -12.22720 -12.15069 -12.03250 -11.77754 -11.62996 -11.45982 -11.15647 -11.09468 -10.50220 -10.23304 -9.69735 -9.35532 -8.76661 -6.57688 -0.11210 0.58361 1.01453 1.36587 1.47036 1.52873 2.16277 2.31632 2.66028 2.88803 3.04362 3.50895 3.84728 3.89828 3.96900 4.03793 4.30730 4.32851 4.37474 4.42974 4.53864 4.60143 4.60966 4.63726 4.75232 4.82802 4.89987 4.95388 5.01340 5.05050 5.09663 5.13085 5.17983 5.32185 5.34768 5.53059 5.56175 5.61407 5.75378 5.86343 6.04861 6.12530 6.25467 6.30906 6.51481 6.71712 6.87826 8.19442 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.005592 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.531813 B = 5006.046283 C = 5838.882762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.060 3.940 4 C -0.110 4.110 5 C 0.189 3.811 6 C -0.187 4.187 7 C -0.182 4.182 8 N -1.105 6.105 9 S 2.716 3.284 10 O -1.008 7.008 11 O -0.999 6.999 12 C -0.777 4.777 13 C -0.012 4.012 14 C -0.246 4.246 15 C -0.076 4.076 16 C -0.184 4.184 17 C 0.170 3.830 18 C -0.480 4.480 19 H 0.092 0.908 20 C 0.041 3.959 21 N -0.810 5.810 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.246 1.246 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.418 0.582 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 -4.105 -5.189 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.016 4.016 4 C -0.149 4.149 5 C 0.101 3.899 6 C -0.245 4.245 7 C -0.240 4.240 8 N -0.864 5.864 9 S 2.813 3.187 10 O -0.999 6.999 11 O -0.989 6.989 12 C -0.871 4.871 13 C -0.031 4.031 14 C -0.266 4.266 15 C -0.095 4.095 16 C -0.204 4.204 17 C 0.166 3.834 18 C -0.509 4.509 19 H 0.110 0.890 20 C -0.177 4.177 21 N -0.434 5.434 22 Si 0.789 3.211 23 H -0.187 1.187 24 H -0.188 1.188 25 H -0.170 1.170 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.482 -3.736 -5.637 14.196 hybrid contribution 0.464 -0.606 1.062 1.308 sum -12.018 -4.342 -4.575 13.573 Atomic orbital electron populations 1.22926 0.79526 1.03731 1.00938 1.87821 1.21451 1.28789 1.95644 1.22737 0.92605 0.84507 1.01793 1.21603 0.94368 0.94963 1.04005 1.20026 0.77937 0.96225 0.95743 1.22748 1.03384 1.00932 0.97388 1.22692 1.02985 1.01735 0.96631 1.55512 1.15907 1.24631 1.90375 1.00444 0.71737 0.72552 0.73954 1.93482 1.36040 1.82096 1.88278 1.93412 1.80215 1.60937 1.64333 1.30082 1.30140 1.07118 1.19729 1.20472 0.92432 0.92666 0.97572 1.20847 1.11811 1.01687 0.92242 1.21206 0.95715 0.94143 0.98421 1.21507 1.03909 0.97466 0.97479 1.17187 0.84561 0.90893 0.90766 1.20091 1.22390 1.01411 1.06989 0.89041 1.26731 0.93969 1.04084 0.92927 1.69820 1.22667 1.38488 1.12466 0.85420 0.79698 0.76541 0.79425 1.18658 1.18828 1.16962 0.93404 0.92818 0.88686 0.92100 0.91011 0.89781 0.91097 0.92108 0.88839 0.92495 0.91634 0.88994 0.91135 0.74626 0.86022 0.85678 0.86343 0.87268 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.47 10.70 -148.98 -1.59 -11.07 16 3 C 0.06 1.25 5.26 71.99 0.38 1.63 16 4 C -0.11 -2.70 4.76 30.60 0.15 -2.55 16 5 C 0.19 5.40 0.91 3.60 0.00 5.41 16 6 C -0.19 -5.74 6.97 71.98 0.50 -5.24 16 7 C -0.18 -4.75 7.99 71.98 0.58 -4.17 16 8 N -1.10 -38.04 4.56 -152.21 -0.69 -38.73 16 9 S 2.72 117.73 4.62 -56.49 -0.26 117.47 16 10 O -1.01 -51.60 16.77 -128.00 -2.15 -53.74 16 11 O -1.00 -43.03 14.05 -128.00 -1.80 -44.83 16 12 C -0.78 -35.90 3.61 22.73 0.08 -35.82 16 13 C -0.01 -0.50 7.72 22.22 0.17 -0.33 16 14 C -0.25 -9.94 10.05 22.46 0.23 -9.72 16 15 C -0.08 -3.26 10.02 22.22 0.22 -3.04 16 16 C -0.18 -8.98 8.66 22.73 0.20 -8.79 16 17 C 0.17 8.54 4.97 -21.29 -0.11 8.43 16 18 C -0.48 -24.12 7.66 23.46 0.18 -23.94 16 19 H 0.09 4.28 5.64 -2.91 -0.02 4.27 16 20 C 0.04 1.97 5.23 85.26 0.45 2.41 16 21 N -0.81 -40.62 10.93 21.83 0.24 -40.38 16 22 Si 0.97 36.92 29.58 68.60 2.03 38.95 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 25 H -0.25 -8.75 7.11 99.48 0.71 -8.05 16 26 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.20 6.27 -2.39 -0.01 1.19 16 30 H 0.07 1.23 6.28 -2.39 -0.01 1.22 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.05 4.89 -2.38 -0.01 2.04 16 34 H 0.09 2.25 6.05 -2.39 -0.01 2.23 16 35 H 0.06 2.02 7.29 -2.38 -0.02 2.00 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.09 1.79 6.08 -2.39 -0.01 1.77 16 38 H 0.07 2.18 5.88 -2.39 -0.01 2.17 16 39 H 0.42 13.10 8.23 -96.75 -0.80 12.30 16 40 H 0.12 4.75 7.33 -2.91 -0.02 4.73 16 41 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 43 H 0.11 5.54 6.30 -2.91 -0.02 5.52 16 44 H 0.29 13.30 8.30 -92.70 -0.77 12.53 16 Total: -1.00 -64.65 350.85 0.28 -64.37 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: 0.23 Total: 42.05 kcal Atomic # 6 Polarization: -78.36 SS G_CDS: 4.27 Total: -74.08 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -0.46 Total: -79.11 kcal Atomic # 8 Polarization: -104.10 SS G_CDS: -5.54 Total: -109.64 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: 117.73 SS G_CDS: -0.26 Total: 117.47 kcal Total: -64.65 0.28 -64.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601363146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.165 kcal (2) G-P(sol) polarization free energy of solvation -64.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds