Wall clock time and date at job start Tue Mar 31 2020 15:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99853 * 2 1 4 4 C 1.53005 * 109.46888 * 60.00226 * 3 2 1 5 5 C 1.52996 * 109.47192 * 299.99866 * 3 2 1 6 6 C 1.52996 * 109.46974 * 179.97438 * 3 2 1 7 7 N 1.46498 * 109.47082 * 65.00070 * 6 3 2 8 8 C 1.46498 * 120.00155 * 280.54110 * 7 6 3 9 9 S 1.65609 * 120.00007 * 100.54389 * 7 6 3 10 10 O 1.42094 * 106.39762 * 344.42025 * 9 7 6 11 11 O 1.42097 * 106.39820 * 211.49724 * 9 7 6 12 12 C 1.76197 * 107.21731 * 97.95782 * 9 7 6 13 13 C 1.37643 * 120.12883 * 114.32622 * 12 9 7 14 14 C 1.38612 * 120.25116 * 179.97438 * 13 12 9 15 15 C 1.38654 * 120.49964 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.25126 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12901 * 294.05591 * 12 9 7 18 18 C 1.41389 * 120.24228 * 359.97438 * 17 12 9 19 19 H 1.07997 * 120.00536 * 326.99117 * 18 17 12 20 20 C 1.39953 * 119.99888 * 146.99509 * 18 17 12 21 21 N 1.30820 * 119.99771 * 349.99909 * 20 18 17 22 22 Si 1.86802 * 120.00038 * 170.00360 * 20 18 17 23 23 H 1.48503 * 109.47142 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47245 * 119.99977 * 22 20 18 25 25 H 1.48500 * 109.46669 * 240.00037 * 22 20 18 26 26 H 1.08998 * 109.47127 * 299.99582 * 1 2 3 27 27 H 1.08995 * 109.46715 * 60.00418 * 1 2 3 28 28 H 1.09004 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46789 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47066 * 299.99318 * 4 3 2 31 31 H 1.08997 * 109.47230 * 60.00093 * 4 3 2 32 32 H 1.08998 * 109.47503 * 299.99840 * 5 3 2 33 33 H 1.09000 * 109.46943 * 60.00497 * 5 3 2 34 34 H 1.08999 * 109.47116 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47722 * 305.00221 * 6 3 2 36 36 H 1.09000 * 109.47604 * 185.00217 * 6 3 2 37 37 H 1.08997 * 109.47505 * 270.00082 * 8 7 6 38 38 H 1.09000 * 109.47161 * 30.00213 * 8 7 6 39 39 H 1.09006 * 109.46974 * 149.99635 * 8 7 6 40 40 H 1.08001 * 119.87041 * 0.02562 * 13 12 9 41 41 H 1.07998 * 119.74936 * 180.02562 * 14 13 12 42 42 H 1.07999 * 119.87665 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.13102 * 179.97438 * 16 15 14 44 44 H 0.97002 * 119.99871 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5354 1.1846 0.0006 7 7 3.9766 0.5640 -1.2509 8 6 3.8871 -0.8885 -1.4196 9 16 4.5767 1.5043 -2.4749 10 8 4.2027 2.8416 -2.1737 11 8 4.2267 0.8539 -3.6889 12 6 6.3343 1.4427 -2.3662 13 6 7.0683 0.8527 -3.3700 14 6 8.4511 0.8033 -3.2874 15 6 9.1106 1.3458 -2.1950 16 6 8.3971 1.9396 -1.1793 17 6 6.9932 2.0015 -1.2557 18 6 6.2500 2.6157 -0.2216 19 1 5.3315 3.1351 -0.4517 20 6 6.7046 2.5507 1.1005 21 7 7.7027 1.7639 1.4109 22 14 5.8864 3.5872 2.4216 23 1 4.7906 4.3860 1.8162 24 1 5.3293 2.6990 3.4734 25 1 6.8891 4.5010 3.0255 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 2.0024 3.0603 1.2495 30 1 0.4721 2.1508 1.2493 31 1 1.8804 1.5237 2.1393 32 1 1.8805 1.5238 -2.1392 33 1 0.4722 2.1508 -1.2492 34 1 2.0025 3.0603 -1.2494 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1765 0.0902 37 1 4.8120 -1.3519 -1.0764 38 1 3.0503 -1.2713 -0.8352 39 1 3.7321 -1.1231 -2.4728 40 1 6.5649 0.4274 -4.2257 41 1 9.0190 0.3388 -4.0798 42 1 10.1883 1.3021 -2.1411 43 1 8.9128 2.3612 -0.3291 44 1 8.0180 1.7191 2.3272 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601369036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:48 Heat of formation + Delta-G solvation = -98.895766 kcal Electronic energy + Delta-G solvation = -28392.685755 eV Core-core repulsion = 24630.173787 eV Total energy + Delta-G solvation = -3762.511967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.99914 -37.61367 -36.34085 -35.37751 -34.84660 -33.86439 -32.21291 -30.24123 -29.58472 -27.46623 -27.19513 -26.45457 -25.48924 -23.82732 -21.64000 -21.15746 -19.76150 -18.14519 -17.68460 -17.11093 -16.16304 -15.94323 -15.61412 -15.37392 -15.20469 -14.77042 -14.36053 -14.04557 -13.48694 -13.33801 -13.10252 -12.85205 -12.77807 -12.70583 -12.35618 -12.12510 -11.97902 -11.86763 -11.74213 -11.45691 -11.31400 -11.25769 -11.24484 -11.15234 -11.00589 -10.89153 -10.77146 -10.55665 -10.34736 -10.31348 -9.86955 -9.49034 -9.35674 -9.21543 -8.28240 -8.01464 -7.57695 -7.05207 -4.80284 1.52928 2.32184 2.68653 2.93742 3.00447 3.04265 3.73300 3.88934 3.99026 4.37915 4.72367 5.00977 5.07958 5.23364 5.27398 5.41952 5.42509 5.50497 5.62619 5.68922 5.75661 5.83501 6.01108 6.01894 6.05882 6.09389 6.21683 6.24817 6.26799 6.38086 6.42215 6.49105 6.52369 6.67211 6.79870 6.94819 7.04197 7.30179 7.33751 7.46495 7.50311 7.67792 7.78116 7.92545 8.32430 8.50549 8.63432 9.89854 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.007293 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.126355 B = 3838.462875 C = 5400.969134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.372 6.372 3 C 0.093 3.907 4 C -0.178 4.178 5 C -0.183 4.183 6 C 0.139 3.861 7 N -0.985 5.985 8 C 0.091 3.909 9 S 2.703 3.297 10 O -0.972 6.972 11 O -0.997 6.997 12 C -0.773 4.773 13 C -0.006 4.006 14 C -0.245 4.245 15 C -0.077 4.077 16 C -0.154 4.154 17 C 0.196 3.804 18 C -0.485 4.485 19 H 0.117 0.883 20 C 0.082 3.918 21 N -0.781 5.781 22 Si 0.896 3.104 23 H -0.248 1.248 24 H -0.266 1.266 25 H -0.268 1.268 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 -1.834 2.508 9.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.291 6.291 3 C 0.052 3.948 4 C -0.236 4.236 5 C -0.240 4.240 6 C 0.013 3.987 7 N -0.820 5.820 8 C -0.055 4.055 9 S 2.802 3.198 10 O -0.963 6.963 11 O -0.987 6.987 12 C -0.868 4.868 13 C -0.026 4.026 14 C -0.265 4.265 15 C -0.096 4.096 16 C -0.174 4.174 17 C 0.192 3.808 18 C -0.513 4.513 19 H 0.134 0.866 20 C -0.138 4.138 21 N -0.404 5.404 22 Si 0.718 3.282 23 H -0.171 1.171 24 H -0.191 1.191 25 H -0.192 1.192 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.139 0.861 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.934 -1.661 2.108 9.328 hybrid contribution 0.433 0.227 0.996 1.110 sum -8.500 -1.433 3.104 9.162 Atomic orbital electron populations 1.22738 0.82703 1.01992 0.99868 1.87985 1.18560 1.27650 1.94953 1.22162 0.95281 0.83103 0.94281 1.22379 1.01559 1.01542 0.98159 1.22516 1.01135 1.02484 0.97898 1.21574 0.89231 1.01114 0.86829 1.57062 1.77891 1.16690 1.30348 1.21487 1.02029 0.79692 1.02246 1.01064 0.74432 0.72757 0.71571 1.93455 1.83615 1.34991 1.84229 1.93430 1.84340 1.76862 1.44115 1.30019 1.22665 1.24806 1.09302 1.20272 0.94173 0.93013 0.95156 1.20523 0.94081 1.11406 1.00491 1.20922 0.97812 0.96653 0.94227 1.21467 0.94341 1.03271 0.98338 1.17016 0.92032 0.83886 0.87884 1.20472 1.09617 1.30046 0.91169 0.86577 1.25945 0.94119 0.93599 1.00171 1.69786 1.21031 1.28285 1.21329 0.86415 0.80951 0.80703 0.80098 1.17102 1.19103 1.19248 0.94201 0.94064 0.90286 0.90899 0.92154 0.91613 0.92753 0.92534 0.89343 0.90371 0.86319 0.93481 0.89931 0.91276 0.87439 0.88615 0.88745 0.86130 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.21 101.05 1.03 1.30 16 2 O -0.37 -5.54 8.28 -35.23 -0.29 -5.83 16 3 C 0.09 1.45 0.91 -90.62 -0.08 1.36 16 4 C -0.18 -2.34 8.25 37.16 0.31 -2.04 16 5 C -0.18 -2.93 6.94 37.16 0.26 -2.67 16 6 C 0.14 2.52 4.14 -4.04 -0.02 2.51 16 7 N -0.99 -19.19 2.49 -121.76 -0.30 -19.49 16 8 C 0.09 1.57 10.53 59.85 0.63 2.20 16 9 S 2.70 60.37 3.99 -107.50 -0.43 59.94 16 10 O -0.97 -22.63 12.56 -57.17 -0.72 -23.34 16 11 O -1.00 -23.27 15.75 -57.17 -0.90 -24.17 16 12 C -0.77 -18.75 5.97 -38.87 -0.23 -18.99 16 13 C -0.01 -0.15 9.54 -39.66 -0.38 -0.52 16 14 C -0.24 -5.40 10.05 -39.29 -0.39 -5.79 16 15 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 16 C -0.15 -3.80 8.64 -38.87 -0.34 -4.14 16 17 C 0.20 4.96 5.50 -106.82 -0.59 4.37 16 18 C -0.48 -11.72 6.44 -37.74 -0.24 -11.96 16 19 H 0.12 2.79 4.05 -52.49 -0.21 2.58 16 20 C 0.08 1.87 5.24 -17.34 -0.09 1.78 16 21 N -0.78 -18.20 11.08 55.55 0.62 -17.59 16 22 Si 0.90 16.90 29.57 -169.99 -5.03 11.88 16 23 H -0.25 -4.59 7.11 56.52 0.40 -4.19 16 24 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 25 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 26 H 0.04 0.40 6.42 -51.93 -0.33 0.07 16 27 H 0.04 0.46 6.42 -51.93 -0.33 0.12 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.95 6.68 -51.93 -0.35 0.61 16 33 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 34 H 0.09 1.49 7.17 -51.93 -0.37 1.12 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.12 2.32 4.43 -51.93 -0.23 2.09 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.28 6.19 -51.93 -0.32 0.96 16 39 H 0.07 1.17 7.11 -51.93 -0.37 0.80 16 40 H 0.11 2.31 7.32 -52.49 -0.38 1.93 16 41 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.12 2.98 6.51 -52.49 -0.34 2.64 16 44 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -28.18 347.91 -8.36 -36.55 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.02 Total: 11.54 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: -0.53 Total: -34.72 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.31 Total: -37.08 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -1.91 Total: -53.34 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 60.37 SS G_CDS: -0.43 Total: 59.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.18 -8.36 -36.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601369036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.350 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds