Wall clock time and date at job start Tue Mar 31 2020 15:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99853 * 2 1 4 4 C 1.53005 * 109.46888 * 60.00226 * 3 2 1 5 5 C 1.52996 * 109.47192 * 299.99866 * 3 2 1 6 6 C 1.52996 * 109.46974 * 179.97438 * 3 2 1 7 7 N 1.46498 * 109.47082 * 65.00070 * 6 3 2 8 8 C 1.46498 * 120.00155 * 280.54110 * 7 6 3 9 9 S 1.65609 * 120.00007 * 100.54389 * 7 6 3 10 10 O 1.42094 * 106.39762 * 344.42025 * 9 7 6 11 11 O 1.42097 * 106.39820 * 211.49724 * 9 7 6 12 12 C 1.76197 * 107.21731 * 97.95782 * 9 7 6 13 13 C 1.37643 * 120.12883 * 114.32622 * 12 9 7 14 14 C 1.38612 * 120.25116 * 179.97438 * 13 12 9 15 15 C 1.38654 * 120.49964 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.25126 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12901 * 294.05591 * 12 9 7 18 18 C 1.41389 * 120.24228 * 359.97438 * 17 12 9 19 19 H 1.07997 * 120.00536 * 326.99117 * 18 17 12 20 20 C 1.39953 * 119.99888 * 146.99509 * 18 17 12 21 21 N 1.30820 * 119.99771 * 349.99909 * 20 18 17 22 22 Si 1.86802 * 120.00038 * 170.00360 * 20 18 17 23 23 H 1.48503 * 109.47142 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47245 * 119.99977 * 22 20 18 25 25 H 1.48500 * 109.46669 * 240.00037 * 22 20 18 26 26 H 1.08998 * 109.47127 * 299.99582 * 1 2 3 27 27 H 1.08995 * 109.46715 * 60.00418 * 1 2 3 28 28 H 1.09004 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46789 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47066 * 299.99318 * 4 3 2 31 31 H 1.08997 * 109.47230 * 60.00093 * 4 3 2 32 32 H 1.08998 * 109.47503 * 299.99840 * 5 3 2 33 33 H 1.09000 * 109.46943 * 60.00497 * 5 3 2 34 34 H 1.08999 * 109.47116 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.47722 * 305.00221 * 6 3 2 36 36 H 1.09000 * 109.47604 * 185.00217 * 6 3 2 37 37 H 1.08997 * 109.47505 * 270.00082 * 8 7 6 38 38 H 1.09000 * 109.47161 * 30.00213 * 8 7 6 39 39 H 1.09006 * 109.46974 * 149.99635 * 8 7 6 40 40 H 1.08001 * 119.87041 * 0.02562 * 13 12 9 41 41 H 1.07998 * 119.74936 * 180.02562 * 14 13 12 42 42 H 1.07999 * 119.87665 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.13102 * 179.97438 * 16 15 14 44 44 H 0.97002 * 119.99871 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5354 1.1846 0.0006 7 7 3.9766 0.5640 -1.2509 8 6 3.8871 -0.8885 -1.4196 9 16 4.5767 1.5043 -2.4749 10 8 4.2027 2.8416 -2.1737 11 8 4.2267 0.8539 -3.6889 12 6 6.3343 1.4427 -2.3662 13 6 7.0683 0.8527 -3.3700 14 6 8.4511 0.8033 -3.2874 15 6 9.1106 1.3458 -2.1950 16 6 8.3971 1.9396 -1.1793 17 6 6.9932 2.0015 -1.2557 18 6 6.2500 2.6157 -0.2216 19 1 5.3315 3.1351 -0.4517 20 6 6.7046 2.5507 1.1005 21 7 7.7027 1.7639 1.4109 22 14 5.8864 3.5872 2.4216 23 1 4.7906 4.3860 1.8162 24 1 5.3293 2.6990 3.4734 25 1 6.8891 4.5010 3.0255 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 2.0024 3.0603 1.2495 30 1 0.4721 2.1508 1.2493 31 1 1.8804 1.5237 2.1393 32 1 1.8805 1.5238 -2.1392 33 1 0.4722 2.1508 -1.2492 34 1 2.0025 3.0603 -1.2494 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1765 0.0902 37 1 4.8120 -1.3519 -1.0764 38 1 3.0503 -1.2713 -0.8352 39 1 3.7321 -1.1231 -2.4728 40 1 6.5649 0.4274 -4.2257 41 1 9.0190 0.3388 -4.0798 42 1 10.1883 1.3021 -2.1411 43 1 8.9128 2.3612 -0.3291 44 1 8.0180 1.7191 2.3272 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601369036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:47 Heat of formation + Delta-G solvation = -115.572905 kcal Electronic energy + Delta-G solvation = -28393.408930 eV Core-core repulsion = 24630.173787 eV Total energy + Delta-G solvation = -3763.235143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17778 -39.39052 -38.12656 -36.82402 -36.59568 -35.60871 -33.42083 -32.02141 -31.38119 -28.69856 -28.33610 -27.62566 -27.21241 -25.22503 -23.41992 -22.94337 -20.96309 -19.81506 -19.42473 -18.75159 -17.83147 -17.39254 -16.97923 -16.94319 -16.51629 -16.05221 -15.93375 -15.52414 -15.05139 -15.00527 -14.59341 -14.45330 -14.13115 -13.96449 -13.78243 -13.66195 -13.51194 -13.28155 -13.04197 -13.00204 -12.91086 -12.84577 -12.74589 -12.54328 -12.49958 -12.39553 -12.22912 -12.11011 -11.94847 -11.61870 -11.51394 -11.17709 -10.98558 -10.42093 -9.89552 -9.69367 -9.39852 -8.76691 -6.61625 -0.18537 0.52244 0.95737 1.38882 1.46944 1.53739 2.17032 2.27706 2.63244 2.89325 2.98972 3.47060 3.67042 3.83101 3.89438 4.07365 4.22435 4.29387 4.47406 4.53253 4.56761 4.62147 4.68704 4.69686 4.72580 4.77212 4.86549 4.91769 4.94326 4.99769 5.04424 5.12219 5.19726 5.22998 5.25434 5.28395 5.34962 5.53547 5.67994 5.82235 5.89146 5.97825 6.13727 6.39712 6.51387 6.72275 6.82735 8.21087 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.007293 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.126355 B = 3838.462875 C = 5400.969134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.388 6.388 3 C 0.097 3.903 4 C -0.177 4.177 5 C -0.184 4.184 6 C 0.132 3.868 7 N -0.983 5.983 8 C 0.090 3.910 9 S 2.716 3.284 10 O -0.987 6.987 11 O -1.011 7.011 12 C -0.797 4.797 13 C -0.023 4.023 14 C -0.247 4.247 15 C -0.077 4.077 16 C -0.181 4.181 17 C 0.169 3.831 18 C -0.500 4.500 19 H 0.112 0.888 20 C 0.053 3.947 21 N -0.805 5.805 22 Si 0.948 3.052 23 H -0.245 1.245 24 H -0.248 1.248 25 H -0.264 1.264 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.906 -2.226 3.648 10.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.307 6.307 3 C 0.055 3.945 4 C -0.235 4.235 5 C -0.242 4.242 6 C 0.007 3.993 7 N -0.819 5.819 8 C -0.055 4.055 9 S 2.813 3.187 10 O -0.978 6.978 11 O -1.002 7.002 12 C -0.890 4.890 13 C -0.042 4.042 14 C -0.267 4.267 15 C -0.096 4.096 16 C -0.201 4.201 17 C 0.165 3.835 18 C -0.528 4.528 19 H 0.129 0.871 20 C -0.166 4.166 21 N -0.429 5.429 22 Si 0.767 3.233 23 H -0.168 1.168 24 H -0.172 1.172 25 H -0.189 1.189 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.129 0.871 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.175 -2.063 3.235 10.874 hybrid contribution 0.826 0.279 0.603 1.060 sum -9.349 -1.784 3.838 10.262 Atomic orbital electron populations 1.22977 0.80697 1.03545 1.00779 1.87934 1.20683 1.26995 1.95121 1.21985 0.93428 0.83856 0.95184 1.22376 1.03147 1.01002 0.96943 1.22526 1.02913 1.01383 0.97338 1.21667 0.91471 1.00144 0.86065 1.56886 1.77423 1.17350 1.30269 1.21615 1.02803 0.78422 1.02673 1.00603 0.73752 0.72585 0.71749 1.93421 1.83618 1.36221 1.84526 1.93397 1.84356 1.77121 1.45325 1.30373 1.24018 1.25108 1.09531 1.20590 0.95058 0.93184 0.95389 1.20912 0.93952 1.10770 1.01087 1.21266 0.99375 0.95419 0.93532 1.21532 0.94506 1.04939 0.99116 1.17346 0.92680 0.84748 0.88747 1.20566 1.09709 1.30552 0.91955 0.87081 1.26625 0.94428 0.94115 1.01442 1.69814 1.21804 1.28882 1.22364 0.85637 0.80239 0.79516 0.77905 1.16814 1.17203 1.18860 0.92505 0.93837 0.88560 0.91152 0.89720 0.90927 0.94917 0.89709 0.90769 0.90130 0.87949 0.93549 0.87987 0.91264 0.86344 0.85397 0.85808 0.87076 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.21 113.37 1.16 1.47 16 2 O -0.39 -10.68 8.28 -148.98 -1.23 -11.91 16 3 C 0.10 2.87 0.91 -10.79 -0.01 2.86 16 4 C -0.18 -4.20 8.25 71.98 0.59 -3.61 16 5 C -0.18 -5.72 6.94 71.98 0.50 -5.22 16 6 C 0.13 4.76 4.14 86.38 0.36 5.12 16 7 N -0.98 -38.40 2.49 -539.14 -1.34 -39.74 16 8 C 0.09 3.06 10.53 127.77 1.34 4.40 16 9 S 2.72 123.49 3.99 -56.49 -0.23 123.27 16 10 O -0.99 -47.15 12.56 -128.00 -1.61 -48.76 16 11 O -1.01 -47.80 15.75 -128.00 -2.02 -49.82 16 12 C -0.80 -39.40 5.97 22.73 0.14 -39.27 16 13 C -0.02 -1.05 9.54 22.22 0.21 -0.83 16 14 C -0.25 -10.67 10.05 22.46 0.23 -10.45 16 15 C -0.08 -3.43 10.02 22.22 0.22 -3.21 16 16 C -0.18 -9.07 8.64 22.73 0.20 -8.87 16 17 C 0.17 8.75 5.50 -21.29 -0.12 8.63 16 18 C -0.50 -24.67 6.44 23.46 0.15 -24.52 16 19 H 0.11 5.49 4.05 -2.91 -0.01 5.48 16 20 C 0.05 2.39 5.24 85.26 0.45 2.84 16 21 N -0.80 -37.76 11.08 21.83 0.24 -37.51 16 22 Si 0.95 33.94 29.57 68.60 2.03 35.97 16 23 H -0.25 -8.60 7.11 99.48 0.71 -7.90 16 24 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 25 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 26 H 0.06 0.93 6.42 -2.39 -0.02 0.92 16 27 H 0.04 0.84 6.42 -2.39 -0.02 0.82 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.58 6.54 -2.38 -0.02 1.56 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.03 1.13 6.68 -2.39 -0.02 1.12 16 33 H 0.08 2.07 6.54 -2.39 -0.02 2.06 16 34 H 0.07 2.49 7.17 -2.39 -0.02 2.48 16 35 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 36 H 0.10 4.04 4.43 -2.39 -0.01 4.03 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 3.05 6.19 -2.39 -0.01 3.04 16 39 H 0.07 2.33 7.11 -2.38 -0.02 2.31 16 40 H 0.12 5.10 7.32 -2.91 -0.02 5.08 16 41 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 43 H 0.11 5.64 6.51 -2.91 -0.02 5.62 16 44 H 0.29 12.38 8.30 -92.71 -0.77 11.61 16 Total: -1.00 -60.88 347.91 2.28 -58.60 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 1.02 Total: 40.57 kcal Atomic # 6 Polarization: -76.07 SS G_CDS: 5.42 Total: -70.65 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -1.10 Total: -77.26 kcal Atomic # 8 Polarization: -105.63 SS G_CDS: -4.86 Total: -110.49 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal Atomic # 16 Polarization: 123.49 SS G_CDS: -0.23 Total: 123.27 kcal Total: -60.88 2.28 -58.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601369036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.975 kcal (2) G-P(sol) polarization free energy of solvation -60.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds