Wall clock time and date at job start Tue Mar 31 2020 14:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 C 1.52997 * 109.47313 * 239.99403 * 2 1 3 5 5 C 1.53004 * 109.46729 * 119.99302 * 2 1 3 6 6 H 1.08991 * 109.47641 * 305.28982 * 5 2 1 7 7 C 1.53007 * 109.46718 * 185.28947 * 5 2 1 8 8 O 1.42898 * 109.47183 * 302.08724 * 7 5 2 9 9 N 1.46494 * 109.46975 * 65.29560 * 5 2 1 10 10 S 1.65606 * 119.99921 * 215.07249 * 9 5 2 11 11 O 1.42101 * 106.39926 * 312.37172 * 10 9 5 12 12 O 1.42100 * 106.40271 * 179.45220 * 10 9 5 13 13 C 1.76191 * 107.21952 * 65.91074 * 10 9 5 14 14 C 1.37633 * 120.12896 * 245.11929 * 13 10 9 15 15 C 1.38615 * 120.25026 * 179.97438 * 14 13 10 16 16 C 1.38657 * 120.50347 * 0.02562 * 15 14 13 17 17 C 1.37600 * 120.24497 * 0.02562 * 16 15 14 18 18 C 1.40705 * 120.12697 * 65.11575 * 13 10 9 19 19 C 1.41390 * 120.24377 * 0.04615 * 18 13 10 20 20 H 1.07999 * 120.00188 * 327.46248 * 19 18 13 21 21 C 1.39945 * 120.00220 * 147.46698 * 19 18 13 22 22 N 1.30820 * 120.00552 * 169.07353 * 21 19 18 23 23 Si 1.86807 * 119.99601 * 349.07195 * 21 19 18 24 24 H 1.48496 * 109.46983 * 89.17583 * 23 21 19 25 25 H 1.48504 * 109.46859 * 209.17312 * 23 21 19 26 26 H 1.48492 * 109.47223 * 329.17197 * 23 21 19 27 27 H 1.08996 * 109.47793 * 300.00506 * 1 2 3 28 28 H 1.09000 * 109.46954 * 60.00624 * 1 2 3 29 29 H 1.09002 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47081 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46850 * 299.99440 * 3 2 1 32 32 H 1.08995 * 109.47703 * 59.99628 * 3 2 1 33 33 H 1.08997 * 109.47318 * 288.08634 * 4 2 1 34 34 H 1.09007 * 109.46844 * 48.09331 * 4 2 1 35 35 H 1.08999 * 109.46977 * 168.08315 * 4 2 1 36 36 H 1.09002 * 109.46674 * 62.08936 * 7 5 2 37 37 H 1.09003 * 109.47003 * 182.09030 * 7 5 2 38 38 H 0.96697 * 114.00099 * 179.97438 * 8 7 5 39 39 H 0.97003 * 120.00116 * 35.06604 * 9 5 2 40 40 H 1.08001 * 119.87983 * 0.24785 * 14 13 10 41 41 H 1.07999 * 119.75114 * 179.97438 * 15 14 13 42 42 H 1.07994 * 119.88041 * 180.02562 * 16 15 14 43 43 H 1.08001 * 120.12743 * 180.02562 * 17 16 15 44 44 H 0.97000 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7211 1.2494 6 1 1.6013 -0.2649 2.1368 7 6 3.5642 -0.6070 1.3176 8 8 4.1370 -1.1616 0.1318 9 7 1.6584 -2.1342 1.1875 10 16 1.2599 -2.9458 2.5749 11 8 2.2758 -2.6447 3.5217 12 8 0.9303 -4.2715 2.1837 13 6 -0.2249 -2.2256 3.1923 14 6 -0.2211 -1.5608 4.3974 15 6 -1.3877 -0.9928 4.8852 16 6 -2.5702 -1.0874 4.1674 17 6 -2.5976 -1.7482 2.9608 18 6 -1.4190 -2.3278 2.4552 19 6 -1.4351 -3.0092 1.2164 20 1 -0.5620 -2.9951 0.5809 21 6 -2.5825 -3.7018 0.8135 22 7 -2.6801 -4.1493 -0.4119 23 14 -3.9749 -3.9872 2.0257 24 1 -4.9236 -2.8463 1.9674 25 1 -4.6875 -5.2419 1.6746 26 1 -3.4206 -4.1004 3.3986 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.8604 -1.7918 -1.1494 34 1 1.5140 -0.3447 -2.1264 35 1 3.1092 -0.5413 -1.3616 36 1 3.8465 0.4425 1.4010 37 1 3.9308 -1.1521 2.1875 38 1 5.1028 -1.1228 0.1062 39 1 1.6391 -2.5944 0.3338 40 1 0.6951 -1.4775 4.9630 41 1 -1.3756 -0.4733 5.8320 42 1 -3.4731 -0.6408 4.5567 43 1 -3.5196 -1.8204 2.4031 44 1 -3.4755 -4.6290 -0.6912 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601401929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:54 Heat of formation + Delta-G solvation = -111.810186 kcal Electronic energy + Delta-G solvation = -28386.508290 eV Core-core repulsion = 24623.436311 eV Total energy + Delta-G solvation = -3763.071979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -38.93976 -37.88733 -36.22600 -35.53023 -34.83797 -33.84338 -32.81427 -30.74214 -30.13792 -28.38582 -26.73972 -26.44493 -25.41546 -22.57886 -22.06893 -21.18208 -18.81119 -18.53400 -17.77030 -17.35095 -16.79019 -16.42108 -15.96892 -15.34788 -14.72451 -14.39481 -14.21968 -14.13418 -13.86044 -13.49618 -13.39794 -12.91692 -12.80830 -12.43812 -12.30157 -12.20180 -12.01313 -11.89191 -11.40107 -11.30376 -11.18844 -11.18261 -11.11686 -11.03624 -10.91668 -10.78774 -10.48874 -10.37841 -10.27434 -10.13136 -9.92868 -9.64128 -9.47859 -9.27986 -8.72912 -8.26191 -7.83335 -7.17120 -4.84951 1.50784 2.06358 2.50954 2.97061 3.09358 3.19208 3.80090 3.90052 4.28941 4.45514 4.70198 4.91512 5.05675 5.15329 5.29495 5.44135 5.51646 5.61180 5.66155 5.71829 5.81156 5.90881 5.93016 6.01864 6.13858 6.17488 6.22533 6.24882 6.33750 6.43154 6.46857 6.55791 6.64539 6.76499 6.88008 6.93624 7.03938 7.06892 7.23084 7.38331 7.52535 7.70766 7.79541 7.79708 8.06161 8.26453 8.50310 9.82323 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.006184 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.649186 B = 4526.621109 C = 4920.416839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.136 4.136 5 C 0.174 3.826 6 H 0.092 0.908 7 C 0.054 3.946 8 O -0.554 6.554 9 N -1.105 6.105 10 S 2.699 3.301 11 O -0.999 6.999 12 O -0.961 6.961 13 C -0.768 4.768 14 C 0.015 3.985 15 C -0.259 4.259 16 C -0.044 4.044 17 C -0.237 4.237 18 C 0.164 3.836 19 C -0.428 4.428 20 H 0.105 0.895 21 C 0.089 3.911 22 N -0.782 5.782 23 Si 0.914 3.086 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.242 1.242 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.365 0.635 39 H 0.416 0.584 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 8.456 -0.199 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.194 4.194 5 C 0.065 3.935 6 H 0.110 0.890 7 C -0.025 4.025 8 O -0.358 6.358 9 N -0.863 5.863 10 S 2.795 3.205 11 O -0.989 6.989 12 O -0.951 6.951 13 C -0.862 4.862 14 C -0.005 4.005 15 C -0.279 4.279 16 C -0.062 4.062 17 C -0.257 4.257 18 C 0.159 3.841 19 C -0.455 4.455 20 H 0.123 0.877 21 C -0.134 4.134 22 N -0.403 5.403 23 Si 0.741 3.259 24 H -0.194 1.194 25 H -0.214 1.214 26 H -0.165 1.165 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.211 0.789 39 H 0.254 0.746 40 H 0.131 0.869 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.373 7.564 -0.081 9.891 hybrid contribution -0.912 0.347 0.262 1.010 sum 5.461 7.911 0.181 9.614 Atomic orbital electron populations 1.22028 0.93409 1.04586 1.00785 1.20680 0.96376 0.94588 0.95037 1.21939 1.00728 0.95617 1.01564 1.21969 1.02047 1.00096 0.95250 1.20704 0.91817 0.81785 0.99154 0.88967 1.22873 0.94630 0.97078 0.87917 1.86689 1.23974 1.84773 1.40409 1.55680 1.84667 1.20024 1.25938 1.01201 0.73700 0.73430 0.72187 1.93444 1.57725 1.85846 1.61906 1.93565 1.84921 1.34587 1.82040 1.30037 1.18357 1.29692 1.08134 1.20408 0.97242 0.90370 0.92464 1.20492 0.93783 1.11586 1.02049 1.20821 0.96529 0.95162 0.93719 1.21268 0.98728 1.06637 0.99030 1.17043 0.89740 0.87063 0.90258 1.19785 1.00932 1.24165 1.00605 0.87717 1.26131 0.98964 0.92842 0.95414 1.69601 1.28673 1.25195 1.16868 0.86312 0.79620 0.77190 0.82796 1.19356 1.21408 1.16503 0.93021 0.93476 0.89749 0.92538 0.92707 0.92909 0.92670 0.94039 0.90199 0.93042 0.92393 0.78912 0.74639 0.86932 0.88204 0.88358 0.87423 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.33 37.16 0.31 -2.16 16 2 C -0.07 -0.93 0.62 -154.51 -0.10 -1.02 16 3 C -0.14 -1.65 7.94 37.16 0.30 -1.35 16 4 C -0.14 -1.93 7.42 37.16 0.28 -1.65 16 5 C 0.17 2.67 1.97 -67.93 -0.13 2.53 16 6 H 0.09 1.44 7.90 -51.93 -0.41 1.03 16 7 C 0.05 0.71 6.29 37.16 0.23 0.94 16 8 O -0.55 -6.60 9.85 -35.23 -0.35 -6.95 16 9 N -1.10 -19.88 3.93 -4.89 -0.02 -19.90 16 10 S 2.70 58.00 4.88 -107.50 -0.53 57.47 16 11 O -1.00 -21.70 16.20 -57.17 -0.93 -22.63 16 12 O -0.96 -24.14 16.63 -57.17 -0.95 -25.09 16 13 C -0.77 -17.25 5.86 -38.87 -0.23 -17.48 16 14 C 0.01 0.31 9.53 -39.66 -0.38 -0.07 16 15 C -0.26 -5.12 10.05 -39.29 -0.39 -5.51 16 16 C -0.04 -0.88 10.02 -39.66 -0.40 -1.28 16 17 C -0.24 -5.34 7.06 -38.87 -0.27 -5.61 16 18 C 0.16 3.90 5.11 -106.82 -0.55 3.35 16 19 C -0.43 -10.65 7.03 -37.74 -0.27 -10.91 16 20 H 0.11 2.61 5.27 -52.49 -0.28 2.33 16 21 C 0.09 2.22 5.48 -17.34 -0.09 2.12 16 22 N -0.78 -19.50 13.93 55.55 0.77 -18.72 16 23 Si 0.91 20.14 24.42 -169.99 -4.15 15.99 16 24 H -0.27 -5.54 6.53 56.52 0.37 -5.17 16 25 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.24 -5.58 6.81 56.52 0.38 -5.19 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.61 5.72 -51.93 -0.30 1.32 16 30 H 0.06 0.59 6.39 -51.93 -0.33 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.86 5.87 -51.93 -0.30 0.55 16 34 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.08 1.05 5.67 -51.93 -0.29 0.75 16 36 H 0.05 0.55 6.47 -51.93 -0.34 0.21 16 37 H 0.06 0.83 7.62 -51.93 -0.40 0.43 16 38 H 0.36 2.78 9.12 45.56 0.42 3.19 16 39 H 0.42 7.44 6.29 -34.48 -0.22 7.22 16 40 H 0.11 2.14 7.32 -52.49 -0.38 1.76 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.11 2.37 4.40 -52.49 -0.23 2.14 16 44 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -29.77 346.15 -7.83 -37.60 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -5.20 Total: 15.13 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: -1.70 Total: -38.10 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.75 Total: -38.63 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -2.22 Total: -54.67 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.15 Total: 15.99 kcal Atomic # 16 Polarization: 58.00 SS G_CDS: -0.53 Total: 57.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.77 -7.83 -37.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.212 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds