Wall clock time and date at job start Tue Mar 31 2020 14:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 C 1.52997 * 109.47313 * 239.99403 * 2 1 3 5 5 C 1.53004 * 109.46729 * 119.99302 * 2 1 3 6 6 H 1.08991 * 109.47641 * 305.28982 * 5 2 1 7 7 C 1.53007 * 109.46718 * 185.28947 * 5 2 1 8 8 O 1.42898 * 109.47183 * 302.08724 * 7 5 2 9 9 N 1.46494 * 109.46975 * 65.29560 * 5 2 1 10 10 S 1.65606 * 119.99921 * 215.07249 * 9 5 2 11 11 O 1.42101 * 106.39926 * 312.37172 * 10 9 5 12 12 O 1.42100 * 106.40271 * 179.45220 * 10 9 5 13 13 C 1.76191 * 107.21952 * 65.91074 * 10 9 5 14 14 C 1.37633 * 120.12896 * 245.11929 * 13 10 9 15 15 C 1.38615 * 120.25026 * 179.97438 * 14 13 10 16 16 C 1.38657 * 120.50347 * 0.02562 * 15 14 13 17 17 C 1.37600 * 120.24497 * 0.02562 * 16 15 14 18 18 C 1.40705 * 120.12697 * 65.11575 * 13 10 9 19 19 C 1.41390 * 120.24377 * 0.04615 * 18 13 10 20 20 H 1.07999 * 120.00188 * 327.46248 * 19 18 13 21 21 C 1.39945 * 120.00220 * 147.46698 * 19 18 13 22 22 N 1.30820 * 120.00552 * 169.07353 * 21 19 18 23 23 Si 1.86807 * 119.99601 * 349.07195 * 21 19 18 24 24 H 1.48496 * 109.46983 * 89.17583 * 23 21 19 25 25 H 1.48504 * 109.46859 * 209.17312 * 23 21 19 26 26 H 1.48492 * 109.47223 * 329.17197 * 23 21 19 27 27 H 1.08996 * 109.47793 * 300.00506 * 1 2 3 28 28 H 1.09000 * 109.46954 * 60.00624 * 1 2 3 29 29 H 1.09002 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47081 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46850 * 299.99440 * 3 2 1 32 32 H 1.08995 * 109.47703 * 59.99628 * 3 2 1 33 33 H 1.08997 * 109.47318 * 288.08634 * 4 2 1 34 34 H 1.09007 * 109.46844 * 48.09331 * 4 2 1 35 35 H 1.08999 * 109.46977 * 168.08315 * 4 2 1 36 36 H 1.09002 * 109.46674 * 62.08936 * 7 5 2 37 37 H 1.09003 * 109.47003 * 182.09030 * 7 5 2 38 38 H 0.96697 * 114.00099 * 179.97438 * 8 7 5 39 39 H 0.97003 * 120.00116 * 35.06604 * 9 5 2 40 40 H 1.08001 * 119.87983 * 0.24785 * 14 13 10 41 41 H 1.07999 * 119.75114 * 179.97438 * 15 14 13 42 42 H 1.07994 * 119.88041 * 180.02562 * 16 15 14 43 43 H 1.08001 * 120.12743 * 180.02562 * 17 16 15 44 44 H 0.97000 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7211 1.2494 6 1 1.6013 -0.2649 2.1368 7 6 3.5642 -0.6070 1.3176 8 8 4.1370 -1.1616 0.1318 9 7 1.6584 -2.1342 1.1875 10 16 1.2599 -2.9458 2.5749 11 8 2.2758 -2.6447 3.5217 12 8 0.9303 -4.2715 2.1837 13 6 -0.2249 -2.2256 3.1923 14 6 -0.2211 -1.5608 4.3974 15 6 -1.3877 -0.9928 4.8852 16 6 -2.5702 -1.0874 4.1674 17 6 -2.5976 -1.7482 2.9608 18 6 -1.4190 -2.3278 2.4552 19 6 -1.4351 -3.0092 1.2164 20 1 -0.5620 -2.9951 0.5809 21 6 -2.5825 -3.7018 0.8135 22 7 -2.6801 -4.1493 -0.4119 23 14 -3.9749 -3.9872 2.0257 24 1 -4.9236 -2.8463 1.9674 25 1 -4.6875 -5.2419 1.6746 26 1 -3.4206 -4.1004 3.3986 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.8604 -1.7918 -1.1494 34 1 1.5140 -0.3447 -2.1264 35 1 3.1092 -0.5413 -1.3616 36 1 3.8465 0.4425 1.4010 37 1 3.9308 -1.1521 2.1875 38 1 5.1028 -1.1228 0.1062 39 1 1.6391 -2.5944 0.3338 40 1 0.6951 -1.4775 4.9630 41 1 -1.3756 -0.4733 5.8320 42 1 -3.4731 -0.6408 4.5567 43 1 -3.5196 -1.8204 2.4031 44 1 -3.4755 -4.6290 -0.6912 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601401929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:53 Heat of formation + Delta-G solvation = -134.345330 kcal Electronic energy + Delta-G solvation = -28387.485487 eV Core-core repulsion = 24623.436311 eV Total energy + Delta-G solvation = -3764.049176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.11126 -39.56847 -38.01034 -36.66538 -36.52991 -35.61357 -34.15625 -32.47549 -31.81744 -29.54324 -27.96372 -27.50763 -27.17210 -23.80905 -23.68362 -22.90911 -20.32623 -19.83261 -19.55433 -18.73475 -18.18414 -17.87511 -17.37004 -17.03978 -16.24799 -15.89916 -15.57530 -15.53512 -15.38951 -15.14355 -14.72093 -14.55278 -14.05439 -14.02518 -13.62803 -13.46389 -13.39372 -13.09403 -13.03399 -12.97182 -12.87554 -12.68946 -12.66889 -12.55496 -12.45755 -12.29921 -12.10517 -11.71008 -11.69783 -11.47495 -11.34841 -11.20198 -10.98962 -10.51295 -10.11668 -9.94296 -9.55661 -8.97766 -6.67471 -0.16884 0.35174 0.78876 1.20546 1.35014 1.42590 2.03814 2.32365 2.55724 2.97663 3.32498 3.49148 3.74423 3.81095 3.98719 4.18906 4.24579 4.32153 4.40680 4.49569 4.53364 4.62586 4.63287 4.71890 4.88186 4.91595 4.93756 4.98070 5.09100 5.11695 5.21657 5.24245 5.28871 5.38777 5.40526 5.53886 5.58143 5.67546 5.73284 5.76781 5.84124 6.05177 6.22287 6.29896 6.51584 6.70635 7.07806 8.07058 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.006184 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.649186 B = 4526.621109 C = 4920.416839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.133 4.133 5 C 0.161 3.839 6 H 0.089 0.911 7 C 0.061 3.939 8 O -0.565 6.565 9 N -1.097 6.097 10 S 2.711 3.289 11 O -1.003 7.003 12 O -1.005 7.005 13 C -0.778 4.778 14 C 0.002 3.998 15 C -0.245 4.245 16 C -0.041 4.041 17 C -0.260 4.260 18 C 0.155 3.845 19 C -0.456 4.456 20 H 0.090 0.910 21 C 0.053 3.947 22 N -0.820 5.820 23 Si 0.953 3.047 24 H -0.245 1.245 25 H -0.280 1.280 26 H -0.259 1.259 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.386 0.614 39 H 0.416 0.584 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.109 0.891 44 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 10.991 1.342 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 C -0.194 4.194 4 C -0.190 4.190 5 C 0.054 3.946 6 H 0.107 0.893 7 C -0.018 4.018 8 O -0.373 6.373 9 N -0.857 5.857 10 S 2.807 3.193 11 O -0.993 6.993 12 O -0.995 6.995 13 C -0.872 4.872 14 C -0.018 4.018 15 C -0.265 4.265 16 C -0.059 4.059 17 C -0.280 4.280 18 C 0.150 3.850 19 C -0.484 4.484 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.444 5.444 23 Si 0.777 3.223 24 H -0.170 1.170 25 H -0.206 1.206 26 H -0.183 1.183 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.236 0.764 39 H 0.253 0.747 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.126 0.874 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.867 10.114 1.460 12.312 hybrid contribution -0.939 -0.314 -0.090 0.994 sum 5.928 9.800 1.370 11.535 Atomic orbital electron populations 1.21976 0.95372 1.02403 1.00797 1.20648 0.94637 0.96398 0.94416 1.21907 1.01862 0.93277 1.02313 1.21949 1.03074 0.98643 0.95326 1.21047 0.93965 0.79987 0.99634 0.89288 1.22727 0.92559 0.98822 0.87721 1.86621 1.26080 1.84874 1.39731 1.55400 1.84403 1.21310 1.24602 1.00650 0.73440 0.72682 0.72537 1.93426 1.57584 1.85786 1.62480 1.93504 1.85514 1.37644 1.82873 1.30209 1.18380 1.29594 1.08996 1.20759 0.98789 0.90286 0.91966 1.21002 0.92826 1.09767 1.02917 1.21282 0.98312 0.93709 0.92577 1.21439 0.98399 1.07696 1.00448 1.17191 0.90853 0.86941 0.90034 1.19813 1.00924 1.26101 1.01562 0.89259 1.26726 1.00573 0.92736 0.96494 1.69626 1.29785 1.27153 1.17870 0.85733 0.78257 0.78156 0.80149 1.17024 1.20636 1.18301 0.93602 0.92757 0.93035 0.90670 0.91934 0.92283 0.94895 0.93869 0.88635 0.89729 0.93801 0.76413 0.74659 0.85127 0.84351 0.84578 0.87359 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 8.33 71.98 0.60 -4.30 16 2 C -0.06 -1.63 0.62 -52.18 -0.03 -1.66 16 3 C -0.14 -2.79 7.94 71.98 0.57 -2.21 16 4 C -0.13 -3.67 7.42 71.98 0.53 -3.14 16 5 C 0.16 4.80 1.97 45.00 0.09 4.89 16 6 H 0.09 2.68 7.90 -2.39 -0.02 2.66 16 7 C 0.06 1.46 6.29 71.98 0.45 1.91 16 8 O -0.57 -12.27 9.85 -148.98 -1.47 -13.74 16 9 N -1.10 -40.38 3.93 -169.39 -0.67 -41.05 16 10 S 2.71 118.82 4.88 -56.49 -0.28 118.54 16 11 O -1.00 -43.28 16.20 -128.00 -2.07 -45.35 16 12 O -1.00 -52.75 16.63 -128.00 -2.13 -54.88 16 13 C -0.78 -34.88 5.86 22.73 0.13 -34.75 16 14 C 0.00 0.06 9.53 22.22 0.21 0.28 16 15 C -0.25 -8.77 10.05 22.46 0.23 -8.54 16 16 C -0.04 -1.51 10.02 22.22 0.22 -1.29 16 17 C -0.26 -11.45 7.06 22.73 0.16 -11.29 16 18 C 0.15 7.43 5.11 -21.29 -0.11 7.32 16 19 C -0.46 -23.68 7.03 23.46 0.16 -23.52 16 20 H 0.09 4.76 5.27 -2.91 -0.02 4.75 16 21 C 0.05 2.74 5.48 85.26 0.47 3.20 16 22 N -0.82 -42.86 13.93 21.83 0.30 -42.56 16 23 Si 0.95 41.66 24.42 68.60 1.68 43.33 16 24 H -0.25 -9.70 6.53 99.48 0.65 -9.05 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.26 -11.88 6.81 99.48 0.68 -11.20 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 2.06 5.72 -2.39 -0.01 2.05 16 30 H 0.07 1.27 6.39 -2.38 -0.02 1.26 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 1.04 5.87 -2.39 -0.01 1.03 16 34 H 0.04 1.15 8.09 -2.38 -0.02 1.13 16 35 H 0.10 2.32 5.67 -2.39 -0.01 2.31 16 36 H 0.08 1.47 6.47 -2.39 -0.02 1.46 16 37 H 0.04 1.18 7.62 -2.39 -0.02 1.16 16 38 H 0.39 4.81 9.12 -74.06 -0.68 4.13 16 39 H 0.42 15.66 6.29 -96.74 -0.61 15.06 16 40 H 0.13 4.64 7.32 -2.91 -0.02 4.62 16 41 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 43 H 0.11 4.68 4.40 -2.91 -0.01 4.67 16 44 H 0.30 14.03 8.30 -92.71 -0.77 13.26 16 Total: -1.00 -65.88 346.15 -1.26 -67.14 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: -0.32 Total: 41.67 kcal Atomic # 6 Polarization: -76.80 SS G_CDS: 3.69 Total: -73.10 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -0.36 Total: -83.60 kcal Atomic # 8 Polarization: -108.30 SS G_CDS: -5.67 Total: -113.97 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.68 Total: 43.33 kcal Atomic # 16 Polarization: 118.82 SS G_CDS: -0.28 Total: 118.54 kcal Total: -65.88 -1.26 -67.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.206 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds