Wall clock time and date at job start Tue Mar 31 2020 15:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99904 * 2 1 4 4 C 1.52995 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47047 * 60.00478 * 4 3 2 6 6 C 1.53000 * 109.47555 * 300.00201 * 4 3 2 7 7 C 1.52999 * 109.47107 * 180.02562 * 4 3 2 8 8 N 1.46502 * 109.47514 * 180.02562 * 7 4 3 9 9 S 1.65597 * 120.00255 * 163.78370 * 8 7 4 10 10 O 1.42106 * 106.40079 * 179.14549 * 9 8 7 11 11 O 1.42105 * 106.40372 * 312.06186 * 9 8 7 12 12 C 1.76193 * 107.21829 * 65.60568 * 9 8 7 13 13 C 1.37631 * 120.13186 * 112.30178 * 12 9 8 14 14 C 1.38608 * 120.25334 * 179.97438 * 13 12 9 15 15 C 1.38661 * 120.50026 * 0.02562 * 14 13 12 16 16 C 1.37598 * 120.24867 * 0.02562 * 15 14 13 17 17 C 1.40706 * 120.12533 * 292.02673 * 12 9 8 18 18 C 1.41392 * 120.24568 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99862 * 328.02712 * 18 17 12 20 20 C 1.39938 * 120.00268 * 148.02643 * 18 17 12 21 21 N 1.30826 * 120.00202 * 163.86695 * 20 18 17 22 22 Si 1.86800 * 119.99989 * 343.87159 * 20 18 17 23 23 H 1.48496 * 109.47319 * 94.88900 * 22 20 18 24 24 H 1.48496 * 109.47332 * 214.89137 * 22 20 18 25 25 H 1.48499 * 109.47103 * 334.88855 * 22 20 18 26 26 H 1.08998 * 109.47026 * 60.00016 * 1 2 3 27 27 H 1.09002 * 109.46656 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46717 * 299.99485 * 1 2 3 29 29 H 1.09006 * 109.46694 * 60.00054 * 3 2 1 30 30 H 1.08997 * 109.47109 * 300.00090 * 3 2 1 31 31 H 1.09003 * 109.47082 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.46866 * 299.99615 * 5 4 3 33 33 H 1.08997 * 109.47414 * 59.99635 * 5 4 3 34 34 H 1.09006 * 109.47069 * 300.00403 * 6 4 3 35 35 H 1.09003 * 109.47122 * 59.99917 * 6 4 3 36 36 H 1.08993 * 109.47375 * 180.02562 * 6 4 3 37 37 H 1.08997 * 109.47497 * 60.00252 * 7 4 3 38 38 H 1.09002 * 109.47469 * 300.00186 * 7 4 3 39 39 H 0.97005 * 119.99350 * 343.51429 * 8 7 4 40 40 H 1.08001 * 119.87639 * 359.97438 * 13 12 9 41 41 H 1.08005 * 119.75626 * 179.97438 * 14 13 12 42 42 H 1.08001 * 119.87678 * 179.97438 * 15 14 13 43 43 H 1.07995 * 120.12713 * 179.97438 * 16 15 14 44 44 H 0.97000 * 119.99965 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9865 0.4256 1.2501 7 6 4.1577 2.5824 0.0013 8 7 5.6182 2.4669 0.0013 9 16 6.5523 3.7744 -0.3986 10 8 7.9042 3.3513 -0.2859 11 8 6.0026 4.3096 -1.5948 12 6 6.3065 4.9925 0.8505 13 6 7.3342 5.3246 1.7035 14 6 7.1438 6.2829 2.6867 15 6 5.9183 6.9171 2.8233 16 6 4.8763 6.6003 1.9824 17 6 5.0603 5.6338 0.9761 18 6 3.9990 5.3054 0.1014 19 1 4.2097 5.0065 -0.9148 20 6 2.6758 5.3677 0.5524 21 7 1.6910 5.3776 -0.3087 22 14 2.3156 5.4369 2.3840 23 1 2.1542 6.8521 2.8037 24 1 1.0648 4.6897 2.6712 25 1 3.4415 4.8237 3.1334 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8464 0.8901 30 1 1.6886 1.8464 -0.8900 31 1 5.0740 0.3397 -1.2481 32 1 3.5441 -0.5705 -1.2483 33 1 3.6661 0.9661 -2.1385 34 1 3.6644 0.9667 2.1400 35 1 3.5432 -0.5702 1.2501 36 1 5.0730 0.3400 1.2508 37 1 3.8358 3.1231 0.8913 38 1 3.8365 3.1237 -0.8887 39 1 6.0380 1.6254 0.2393 40 1 8.2928 4.8367 1.6065 41 1 7.9557 6.5370 3.3520 42 1 5.7809 7.6620 3.5931 43 1 3.9226 7.0952 2.0908 44 1 0.7737 5.4204 0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601419220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:17 Heat of formation + Delta-G solvation = -131.176351 kcal Electronic energy + Delta-G solvation = -27915.293212 eV Core-core repulsion = 24151.381454 eV Total energy + Delta-G solvation = -3763.911759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.95224 -39.54337 -38.14656 -37.56043 -36.69267 -35.65649 -33.74600 -32.44567 -31.79691 -28.31607 -28.10604 -27.58975 -26.96048 -25.45812 -23.76791 -22.92019 -20.27462 -20.18760 -19.46309 -18.79976 -18.11170 -17.53512 -17.06472 -16.80787 -16.68544 -16.09984 -15.94808 -15.87945 -15.51845 -15.16127 -15.08736 -14.58044 -14.35865 -14.18009 -13.97136 -13.80263 -13.49309 -13.11666 -13.04148 -12.96454 -12.88446 -12.77490 -12.69168 -12.62288 -12.44394 -12.37458 -12.13195 -11.82872 -11.71645 -11.59263 -11.38962 -11.23654 -11.01450 -10.59396 -10.20062 -9.94254 -9.56360 -8.96864 -6.67391 -0.19490 0.35383 0.79207 1.23347 1.33938 1.43773 2.05262 2.30341 2.50162 2.86075 2.94389 3.35142 3.74005 3.81903 3.86242 4.04720 4.22746 4.31614 4.43192 4.47199 4.49265 4.59199 4.62806 4.66901 4.71203 4.71892 4.83591 4.86842 4.92004 4.97012 4.98848 5.08886 5.21797 5.24151 5.28634 5.39836 5.46569 5.48391 5.56633 5.72449 5.84928 6.10479 6.20477 6.30689 6.33059 6.55845 6.71603 8.05028 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.006606 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.009474 B = 4237.357980 C = 5603.081948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.078 3.922 4 C -0.071 4.071 5 C -0.133 4.133 6 C -0.135 4.135 7 C 0.144 3.856 8 N -1.102 6.102 9 S 2.722 3.278 10 O -1.005 7.005 11 O -1.001 7.001 12 C -0.784 4.784 13 C 0.003 3.997 14 C -0.250 4.250 15 C -0.043 4.043 16 C -0.257 4.257 17 C 0.147 3.853 18 C -0.485 4.485 19 H 0.108 0.892 20 C 0.074 3.926 21 N -0.800 5.800 22 Si 0.930 3.070 23 H -0.260 1.260 24 H -0.267 1.267 25 H -0.246 1.246 26 H 0.041 0.959 27 H 0.106 0.894 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.420 0.580 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.106 0.894 44 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 -8.389 5.549 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C 0.001 3.999 4 C -0.072 4.072 5 C -0.190 4.190 6 C -0.192 4.192 7 C 0.018 3.982 8 N -0.863 5.863 9 S 2.818 3.182 10 O -0.996 6.996 11 O -0.991 6.991 12 C -0.878 4.878 13 C -0.017 4.017 14 C -0.270 4.270 15 C -0.062 4.062 16 C -0.277 4.277 17 C 0.142 3.858 18 C -0.512 4.512 19 H 0.126 0.874 20 C -0.147 4.147 21 N -0.423 5.423 22 Si 0.753 3.247 23 H -0.186 1.186 24 H -0.193 1.193 25 H -0.170 1.170 26 H 0.060 0.940 27 H 0.124 0.876 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.257 0.743 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.124 0.876 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.049 -8.362 4.584 9.753 hybrid contribution -0.834 0.788 1.040 1.549 sum -2.884 -7.573 5.623 9.864 Atomic orbital electron populations 1.22920 0.80036 1.03877 1.00338 1.87783 1.20793 1.27335 1.95476 1.22334 0.93034 0.84514 1.00039 1.20797 0.93075 0.94930 0.98435 1.21760 1.01492 1.00299 0.95495 1.21791 1.01606 1.00465 0.95327 1.21491 0.78071 0.96031 1.02582 1.55133 1.16036 1.27290 1.87869 1.00289 0.71064 0.73043 0.73823 1.93436 1.35279 1.82708 1.88165 1.93467 1.79455 1.79560 1.46621 1.30159 1.04349 1.26508 1.26769 1.20740 0.96170 0.93695 0.91094 1.20999 0.98565 1.03846 1.03609 1.21291 0.92810 0.96258 0.95794 1.21383 0.99840 1.03594 1.02847 1.17290 0.90662 0.87949 0.89906 1.20344 0.90480 1.39699 1.00674 0.87442 1.26547 0.95166 0.90142 1.02847 1.69686 1.02030 1.31924 1.38654 0.86018 0.79081 0.80123 0.79518 1.18585 1.19326 1.16963 0.94002 0.87586 0.93894 0.93810 0.93796 0.91796 0.90941 0.93720 0.93012 0.90901 0.91441 0.91824 0.91444 0.74277 0.85227 0.84504 0.84670 0.87595 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 11.01 113.37 1.25 1.76 16 2 O -0.39 -10.71 9.35 -148.98 -1.39 -12.11 16 3 C 0.08 2.39 4.81 71.98 0.35 2.73 16 4 C -0.07 -2.13 0.62 -52.18 -0.03 -2.16 16 5 C -0.13 -3.70 8.16 71.98 0.59 -3.12 16 6 C -0.13 -3.46 8.16 71.98 0.59 -2.87 16 7 C 0.14 5.33 3.21 86.38 0.28 5.61 16 8 N -1.10 -38.96 5.31 -187.49 -1.00 -39.95 16 9 S 2.72 116.30 5.44 -56.49 -0.31 115.99 16 10 O -1.01 -43.44 16.97 -128.00 -2.17 -45.62 16 11 O -1.00 -50.00 14.95 -128.00 -1.91 -51.92 16 12 C -0.78 -35.21 5.96 22.73 0.14 -35.07 16 13 C 0.00 0.11 9.53 22.21 0.21 0.32 16 14 C -0.25 -9.22 10.05 22.46 0.23 -9.00 16 15 C -0.04 -1.64 10.02 22.22 0.22 -1.42 16 16 C -0.26 -11.31 7.12 22.73 0.16 -11.15 16 17 C 0.15 6.97 5.03 -21.29 -0.11 6.87 16 18 C -0.48 -24.00 5.26 23.46 0.12 -23.88 16 19 H 0.11 5.90 4.48 -2.91 -0.01 5.89 16 20 C 0.07 3.43 4.70 85.25 0.40 3.83 16 21 N -0.80 -37.33 13.93 21.82 0.30 -37.02 16 22 Si 0.93 36.69 24.00 68.60 1.65 38.34 16 23 H -0.26 -9.99 6.73 99.48 0.67 -9.32 16 24 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 25 H -0.25 -9.98 6.82 99.48 0.68 -9.30 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.64 7.23 -2.39 -0.02 1.62 16 32 H 0.07 1.83 7.68 -2.39 -0.02 1.81 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.72 7.68 -2.39 -0.02 1.71 16 36 H 0.07 1.54 6.58 -2.39 -0.02 1.53 16 37 H 0.06 2.51 5.68 -2.39 -0.01 2.50 16 38 H 0.07 2.90 6.08 -2.39 -0.01 2.88 16 39 H 0.42 12.07 6.51 -96.74 -0.63 11.44 16 40 H 0.13 4.75 7.32 -2.91 -0.02 4.73 16 41 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.11 4.55 4.82 -2.91 -0.01 4.54 16 44 H 0.30 12.46 8.30 -92.71 -0.77 11.69 16 Total: -1.00 -60.17 349.73 -0.12 -60.29 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: 0.33 Total: 39.54 kcal Atomic # 6 Polarization: -71.93 SS G_CDS: 4.39 Total: -67.54 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -0.69 Total: -76.98 kcal Atomic # 8 Polarization: -104.16 SS G_CDS: -5.48 Total: -109.64 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 1.65 Total: 38.34 kcal Atomic # 16 Polarization: 116.30 SS G_CDS: -0.31 Total: 115.99 kcal Total: -60.17 -0.12 -60.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601419220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.891 kcal (2) G-P(sol) polarization free energy of solvation -60.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds