Wall clock time and date at job start Tue Mar 31 2020 15:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 114.00261 * 2 1 4 4 C 1.52997 * 109.47244 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47350 * 59.99771 * 4 3 2 6 6 C 1.53003 * 109.46753 * 300.00152 * 4 3 2 7 7 N 1.46496 * 109.47177 * 179.97438 * 4 3 2 8 8 C 1.46500 * 120.00107 * 305.46854 * 7 4 3 9 9 S 1.65601 * 119.99792 * 125.46935 * 7 4 3 10 10 O 1.42102 * 106.39944 * 176.22403 * 9 7 4 11 11 O 1.42096 * 106.40404 * 43.30896 * 9 7 4 12 12 C 1.76194 * 107.21824 * 289.76656 * 9 7 4 13 13 C 1.37641 * 120.13039 * 117.50757 * 12 9 7 14 14 C 1.38607 * 120.25211 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.49958 * 0.02562 * 14 13 12 16 16 C 1.37592 * 120.24892 * 0.02844 * 15 14 13 17 17 C 1.40701 * 120.12722 * 297.23171 * 12 9 7 18 18 C 1.41397 * 120.24485 * 359.97438 * 17 12 9 19 19 H 1.07998 * 119.99863 * 36.19789 * 18 17 12 20 20 C 1.39949 * 120.00012 * 216.20649 * 18 17 12 21 21 N 1.30825 * 120.00022 * 359.62522 * 20 18 17 22 22 Si 1.86797 * 119.99933 * 179.63300 * 20 18 17 23 23 H 1.48508 * 109.47045 * 5.01082 * 22 20 18 24 24 H 1.48504 * 109.47251 * 125.00433 * 22 20 18 25 25 H 1.48492 * 109.47482 * 245.00791 * 22 20 18 26 26 H 1.09001 * 109.46336 * 300.00051 * 1 2 3 27 27 H 1.09004 * 109.47116 * 59.99768 * 1 2 3 28 28 H 1.08991 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47058 * 59.99713 * 3 2 1 30 30 H 1.09003 * 109.46533 * 300.00105 * 3 2 1 31 31 H 1.08997 * 109.47593 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.46785 * 300.00344 * 5 4 3 33 33 H 1.09000 * 109.46880 * 59.99937 * 5 4 3 34 34 H 1.09001 * 109.46834 * 294.24941 * 6 4 3 35 35 H 1.08997 * 109.47398 * 54.25559 * 6 4 3 36 36 H 1.09006 * 109.46872 * 174.25971 * 6 4 3 37 37 H 1.09000 * 109.46901 * 270.00235 * 8 7 4 38 38 H 1.08998 * 109.46974 * 30.00065 * 8 7 4 39 39 H 1.08994 * 109.47190 * 150.00166 * 8 7 4 40 40 H 1.08002 * 119.87182 * 0.02562 * 13 12 9 41 41 H 1.07995 * 119.75013 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.87659 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.12938 * 179.97438 * 16 15 14 44 44 H 0.96990 * 119.99763 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9865 0.4254 -1.2502 6 6 3.9874 0.4250 1.2483 7 7 4.1314 2.5228 -0.0013 8 6 3.7564 3.4912 -1.0346 9 16 5.2290 2.9410 1.1662 10 8 5.6801 4.2491 0.8426 11 8 6.1040 1.8307 1.3105 12 6 4.3471 3.0802 2.6852 13 6 4.6472 2.2451 3.7373 14 6 3.9554 2.3527 4.9336 15 6 2.9546 3.3004 5.0849 16 6 2.6370 4.1450 4.0463 17 6 3.3374 4.0494 2.8293 18 6 3.0248 4.9171 1.7575 19 1 3.0611 4.5543 0.7409 20 6 2.6686 6.2460 2.0140 21 7 2.6177 6.6834 3.2459 22 14 2.2656 7.3950 0.5975 23 1 2.2774 6.6327 -0.6770 24 1 0.9200 7.9869 0.8076 25 1 3.2789 8.4787 0.5354 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6887 1.8463 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 5.0731 0.3389 -1.2505 32 1 3.5431 -0.5703 -1.2501 33 1 3.6645 0.9665 -2.1399 34 1 3.7568 1.0148 2.1355 35 1 3.4654 -0.5304 1.3013 36 1 5.0621 0.2497 1.1979 37 1 4.4277 3.3907 -1.8875 38 1 2.7317 3.3025 -1.3546 39 1 3.8308 4.5008 -0.6307 40 1 5.4252 1.5036 3.6306 41 1 4.1972 1.6930 5.7537 42 1 2.4217 3.3752 6.0214 43 1 1.8568 4.8822 4.1661 44 1 2.3705 7.6043 3.4237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601419347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:28 Heat of formation + Delta-G solvation = -84.249170 kcal Electronic energy + Delta-G solvation = -28569.535847 eV Core-core repulsion = 24807.659003 eV Total energy + Delta-G solvation = -3761.876843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.76785 -37.65146 -36.57252 -36.24139 -34.83519 -33.85267 -31.65761 -30.30105 -29.64472 -27.45576 -27.10544 -25.63115 -25.28492 -24.96275 -21.69453 -21.16166 -20.13500 -17.89833 -17.64579 -16.82029 -16.25375 -15.90533 -15.85243 -15.59817 -15.24132 -14.75801 -14.41087 -13.89029 -13.59419 -13.30248 -13.22927 -13.09196 -13.04139 -12.75745 -12.36448 -12.10261 -11.95824 -11.77585 -11.57142 -11.44765 -11.37267 -11.30708 -11.18012 -11.06137 -10.94411 -10.78476 -10.59794 -10.49260 -10.37784 -9.92074 -9.88873 -9.52152 -9.43480 -9.26142 -8.50972 -7.97574 -7.52934 -6.95767 -4.78821 1.45991 2.29409 2.70654 2.95670 3.00729 3.08655 3.59589 3.78065 4.09670 4.44142 4.70966 4.92874 5.16280 5.24960 5.36291 5.39055 5.43406 5.49128 5.57583 5.69963 5.71481 5.89131 5.95776 6.01042 6.02018 6.12725 6.17933 6.20749 6.25025 6.34326 6.36708 6.50914 6.59113 6.76687 6.93770 6.94719 7.02977 7.17234 7.29564 7.35788 7.47369 7.65998 7.76387 7.88695 8.26456 8.53619 8.62473 9.97593 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.006868 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.574698 B = 4075.706176 C = 4478.213545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.056 3.944 4 C 0.195 3.805 5 C -0.148 4.148 6 C -0.219 4.219 7 N -0.992 5.992 8 C 0.081 3.919 9 S 2.703 3.297 10 O -0.963 6.963 11 O -0.991 6.991 12 C -0.765 4.765 13 C -0.008 4.008 14 C -0.241 4.241 15 C -0.079 4.079 16 C -0.151 4.151 17 C 0.190 3.810 18 C -0.471 4.471 19 H 0.097 0.903 20 C 0.082 3.918 21 N -0.790 5.790 22 Si 0.913 3.087 23 H -0.254 1.254 24 H -0.272 1.272 25 H -0.266 1.266 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -6.843 -6.330 10.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.022 4.022 4 C 0.107 3.893 5 C -0.207 4.207 6 C -0.276 4.276 7 N -0.828 5.828 8 C -0.064 4.064 9 S 2.802 3.198 10 O -0.954 6.954 11 O -0.981 6.981 12 C -0.859 4.859 13 C -0.027 4.027 14 C -0.261 4.261 15 C -0.098 4.098 16 C -0.171 4.171 17 C 0.186 3.814 18 C -0.500 4.500 19 H 0.115 0.885 20 C -0.137 4.137 21 N -0.415 5.415 22 Si 0.736 3.264 23 H -0.178 1.178 24 H -0.197 1.197 25 H -0.191 1.191 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.144 0.856 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.506 -6.647 -6.396 9.868 hybrid contribution -1.204 0.954 0.099 1.540 sum -4.710 -5.692 -6.297 9.708 Atomic orbital electron populations 1.22699 0.81443 1.02222 1.00017 1.87797 1.19227 1.27932 1.95468 1.22905 0.93734 0.84342 1.01262 1.19806 0.90670 0.81591 0.97265 1.22099 1.01726 1.00300 0.96574 1.23128 1.05658 1.02161 0.96688 1.57663 1.62496 1.19394 1.43288 1.21666 1.00399 0.93630 0.90739 1.01182 0.72966 0.72318 0.73340 1.93502 1.79307 1.38571 1.83995 1.93407 1.63805 1.53763 1.87147 1.30094 1.20264 1.16185 1.19368 1.20257 0.95615 0.94573 0.92286 1.20546 1.03463 1.04273 0.97824 1.20955 0.96307 0.95165 0.97340 1.21587 1.01752 0.99677 0.94039 1.17034 0.85226 0.86206 0.92934 1.20153 1.39982 0.94846 0.95047 0.88533 1.25867 0.91743 0.99139 0.96989 1.69744 1.33552 1.17721 1.20435 0.86172 0.78637 0.80229 0.81355 1.17755 1.19737 1.19123 0.93974 0.94420 0.89966 0.91789 0.93069 0.92046 0.91197 0.92814 0.89927 0.90184 0.87462 0.93300 0.91534 0.88681 0.87203 0.88601 0.88764 0.85626 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.58 9.26 -35.23 -0.33 -5.90 16 3 C 0.06 0.86 4.67 37.16 0.17 1.03 16 4 C 0.19 3.20 0.93 -131.82 -0.12 3.08 16 5 C -0.15 -2.10 8.41 37.16 0.31 -1.78 16 6 C -0.22 -3.81 7.04 37.16 0.26 -3.55 16 7 N -0.99 -18.20 2.71 -107.76 -0.29 -18.49 16 8 C 0.08 1.32 8.45 59.85 0.51 1.83 16 9 S 2.70 59.66 4.39 -107.50 -0.47 59.19 16 10 O -0.96 -23.94 15.46 -57.17 -0.88 -24.82 16 11 O -0.99 -22.03 13.56 -57.17 -0.78 -22.80 16 12 C -0.76 -17.92 4.59 -38.87 -0.18 -18.10 16 13 C -0.01 -0.17 7.68 -39.66 -0.30 -0.47 16 14 C -0.24 -5.13 10.05 -39.29 -0.39 -5.53 16 15 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 16 C -0.15 -3.64 8.63 -38.87 -0.34 -3.98 16 17 C 0.19 4.72 5.51 -106.82 -0.59 4.13 16 18 C -0.47 -11.43 7.46 -37.74 -0.28 -11.71 16 19 H 0.10 2.15 2.96 -52.49 -0.16 2.00 16 20 C 0.08 1.95 5.38 -17.34 -0.09 1.85 16 21 N -0.79 -19.32 10.87 55.55 0.60 -18.72 16 22 Si 0.91 17.87 29.56 -169.99 -5.02 12.84 16 23 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 24 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.71 6.51 -51.93 -0.34 0.38 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 33 H 0.05 0.68 7.81 -51.93 -0.41 0.28 16 34 H 0.08 1.57 3.95 -51.93 -0.21 1.37 16 35 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 36 H 0.11 1.96 5.64 -51.93 -0.29 1.67 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.92 6.15 -51.93 -0.32 0.60 16 39 H 0.09 1.75 5.27 -51.93 -0.27 1.48 16 40 H 0.11 2.25 7.33 -52.49 -0.38 1.87 16 41 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.13 3.09 6.44 -52.49 -0.34 2.75 16 44 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -28.68 347.47 -8.28 -36.97 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.02 Total: 10.35 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: -0.33 Total: -33.85 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.31 Total: -37.21 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -1.99 Total: -53.53 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.02 Total: 12.84 kcal Atomic # 16 Polarization: 59.66 SS G_CDS: -0.47 Total: 59.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.68 -8.28 -36.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601419347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.282 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds