Wall clock time and date at job start Tue Mar 31 2020 15:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 114.00261 * 2 1 4 4 C 1.52997 * 109.47244 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47350 * 59.99771 * 4 3 2 6 6 C 1.53003 * 109.46753 * 300.00152 * 4 3 2 7 7 N 1.46496 * 109.47177 * 179.97438 * 4 3 2 8 8 C 1.46500 * 120.00107 * 305.46854 * 7 4 3 9 9 S 1.65601 * 119.99792 * 125.46935 * 7 4 3 10 10 O 1.42102 * 106.39944 * 176.22403 * 9 7 4 11 11 O 1.42096 * 106.40404 * 43.30896 * 9 7 4 12 12 C 1.76194 * 107.21824 * 289.76656 * 9 7 4 13 13 C 1.37641 * 120.13039 * 117.50757 * 12 9 7 14 14 C 1.38607 * 120.25211 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.49958 * 0.02562 * 14 13 12 16 16 C 1.37592 * 120.24892 * 0.02844 * 15 14 13 17 17 C 1.40701 * 120.12722 * 297.23171 * 12 9 7 18 18 C 1.41397 * 120.24485 * 359.97438 * 17 12 9 19 19 H 1.07998 * 119.99863 * 36.19789 * 18 17 12 20 20 C 1.39949 * 120.00012 * 216.20649 * 18 17 12 21 21 N 1.30825 * 120.00022 * 359.62522 * 20 18 17 22 22 Si 1.86797 * 119.99933 * 179.63300 * 20 18 17 23 23 H 1.48508 * 109.47045 * 5.01082 * 22 20 18 24 24 H 1.48504 * 109.47251 * 125.00433 * 22 20 18 25 25 H 1.48492 * 109.47482 * 245.00791 * 22 20 18 26 26 H 1.09001 * 109.46336 * 300.00051 * 1 2 3 27 27 H 1.09004 * 109.47116 * 59.99768 * 1 2 3 28 28 H 1.08991 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47058 * 59.99713 * 3 2 1 30 30 H 1.09003 * 109.46533 * 300.00105 * 3 2 1 31 31 H 1.08997 * 109.47593 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.46785 * 300.00344 * 5 4 3 33 33 H 1.09000 * 109.46880 * 59.99937 * 5 4 3 34 34 H 1.09001 * 109.46834 * 294.24941 * 6 4 3 35 35 H 1.08997 * 109.47398 * 54.25559 * 6 4 3 36 36 H 1.09006 * 109.46872 * 174.25971 * 6 4 3 37 37 H 1.09000 * 109.46901 * 270.00235 * 8 7 4 38 38 H 1.08998 * 109.46974 * 30.00065 * 8 7 4 39 39 H 1.08994 * 109.47190 * 150.00166 * 8 7 4 40 40 H 1.08002 * 119.87182 * 0.02562 * 13 12 9 41 41 H 1.07995 * 119.75013 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.87659 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.12938 * 179.97438 * 16 15 14 44 44 H 0.96990 * 119.99763 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9865 0.4254 -1.2502 6 6 3.9874 0.4250 1.2483 7 7 4.1314 2.5228 -0.0013 8 6 3.7564 3.4912 -1.0346 9 16 5.2290 2.9410 1.1662 10 8 5.6801 4.2491 0.8426 11 8 6.1040 1.8307 1.3105 12 6 4.3471 3.0802 2.6852 13 6 4.6472 2.2451 3.7373 14 6 3.9554 2.3527 4.9336 15 6 2.9546 3.3004 5.0849 16 6 2.6370 4.1450 4.0463 17 6 3.3374 4.0494 2.8293 18 6 3.0248 4.9171 1.7575 19 1 3.0611 4.5543 0.7409 20 6 2.6686 6.2460 2.0140 21 7 2.6177 6.6834 3.2459 22 14 2.2656 7.3950 0.5975 23 1 2.2774 6.6327 -0.6770 24 1 0.9200 7.9869 0.8076 25 1 3.2789 8.4787 0.5354 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6887 1.8463 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 5.0731 0.3389 -1.2505 32 1 3.5431 -0.5703 -1.2501 33 1 3.6645 0.9665 -2.1399 34 1 3.7568 1.0148 2.1355 35 1 3.4654 -0.5304 1.3013 36 1 5.0621 0.2497 1.1979 37 1 4.4277 3.3907 -1.8875 38 1 2.7317 3.3025 -1.3546 39 1 3.8308 4.5008 -0.6307 40 1 5.4252 1.5036 3.6306 41 1 4.1972 1.6930 5.7537 42 1 2.4217 3.3752 6.0214 43 1 1.8568 4.8822 4.1661 44 1 2.3705 7.6043 3.4237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601419347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:27 Heat of formation + Delta-G solvation = -102.145188 kcal Electronic energy + Delta-G solvation = -28570.311876 eV Core-core repulsion = 24807.659003 eV Total energy + Delta-G solvation = -3762.652873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.04503 -39.35387 -38.20396 -37.56935 -36.63811 -35.60139 -33.00909 -32.05625 -31.38789 -28.66887 -28.21738 -27.33982 -26.40509 -26.32805 -23.44051 -22.92925 -21.52359 -19.61174 -19.32817 -18.33086 -17.65142 -17.54815 -17.25119 -16.76757 -16.68212 -16.20157 -16.03060 -15.37522 -15.00716 -14.94857 -14.83739 -14.46964 -14.33625 -14.26491 -13.83259 -13.55625 -13.47157 -13.14047 -13.05775 -12.93482 -12.92683 -12.86373 -12.71371 -12.52591 -12.39837 -12.11874 -12.06322 -12.01603 -11.89939 -11.62298 -11.31621 -11.25003 -10.99016 -10.53339 -9.95165 -9.69383 -9.31609 -8.70050 -6.59955 -0.21140 0.52066 0.97446 1.36167 1.49070 1.51054 2.12314 2.16956 2.68057 2.88078 3.05729 3.42927 3.63030 3.81570 3.99211 4.11170 4.24415 4.32093 4.43906 4.49927 4.55881 4.61886 4.68284 4.68764 4.73829 4.80299 4.87933 4.90082 4.91575 4.95128 5.04079 5.09832 5.17135 5.22367 5.30914 5.42592 5.53919 5.55361 5.68737 5.84097 5.89511 5.99254 6.11902 6.24772 6.49385 6.74653 6.84848 8.26026 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.006868 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.574698 B = 4075.706176 C = 4478.213545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.063 3.937 4 C 0.188 3.812 5 C -0.143 4.143 6 C -0.218 4.218 7 N -0.987 5.987 8 C 0.070 3.930 9 S 2.714 3.286 10 O -0.997 6.997 11 O -0.998 6.998 12 C -0.778 4.778 13 C -0.017 4.017 14 C -0.242 4.242 15 C -0.079 4.079 16 C -0.178 4.178 17 C 0.166 3.834 18 C -0.495 4.495 19 H 0.111 0.889 20 C 0.039 3.961 21 N -0.824 5.824 22 Si 0.964 3.036 23 H -0.234 1.234 24 H -0.259 1.259 25 H -0.274 1.274 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -8.014 -7.989 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.015 4.015 4 C 0.101 3.899 5 C -0.201 4.201 6 C -0.275 4.275 7 N -0.826 5.826 8 C -0.074 4.074 9 S 2.813 3.187 10 O -0.987 6.987 11 O -0.988 6.988 12 C -0.871 4.871 13 C -0.037 4.037 14 C -0.262 4.262 15 C -0.097 4.097 16 C -0.198 4.198 17 C 0.162 3.838 18 C -0.524 4.524 19 H 0.128 0.872 20 C -0.177 4.177 21 N -0.450 5.450 22 Si 0.784 3.216 23 H -0.156 1.156 24 H -0.183 1.183 25 H -0.199 1.199 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.131 0.869 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.401 -7.835 -8.036 12.055 hybrid contribution -0.933 1.185 0.679 1.654 sum -5.334 -6.649 -7.357 11.261 Atomic orbital electron populations 1.22921 0.79751 1.03879 1.00452 1.87770 1.21025 1.27116 1.95527 1.22727 0.92971 0.84916 1.00898 1.20023 0.91422 0.80545 0.97930 1.22063 1.01475 1.00761 0.95842 1.23078 1.05096 1.02753 0.96618 1.57392 1.62209 1.20558 1.42484 1.21889 1.02840 0.91983 0.90665 1.00683 0.73231 0.71508 0.73319 1.93452 1.80370 1.40442 1.84466 1.93399 1.64568 1.53490 1.87362 1.30353 1.19936 1.16046 1.20784 1.20542 0.96021 0.94654 0.92455 1.20928 1.02661 1.04205 0.98409 1.21279 0.96305 0.94359 0.97791 1.21622 1.02365 1.00669 0.95132 1.17344 0.85906 0.86970 0.93600 1.20527 1.40669 0.95412 0.95747 0.87162 1.26738 0.91316 1.00393 0.99268 1.69811 1.34647 1.18366 1.22154 0.85402 0.78663 0.78178 0.79367 1.15644 1.18317 1.19887 0.94643 0.92881 0.87765 0.94372 0.91214 0.92552 0.89970 0.90932 0.91851 0.88723 0.88524 0.90649 0.88782 0.90902 0.85951 0.85452 0.86094 0.86925 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.51 9.26 -148.98 -1.38 -11.89 16 3 C 0.06 1.84 4.67 71.98 0.34 2.17 16 4 C 0.19 5.86 0.93 3.61 0.00 5.87 16 5 C -0.14 -3.63 8.41 71.98 0.61 -3.02 16 6 C -0.22 -7.41 7.04 71.98 0.51 -6.90 16 7 N -0.99 -35.15 2.71 -494.85 -1.34 -36.49 16 8 C 0.07 2.17 8.45 127.77 1.08 3.24 16 9 S 2.71 120.24 4.39 -56.49 -0.25 119.99 16 10 O -1.00 -50.27 15.46 -128.00 -1.98 -52.25 16 11 O -1.00 -44.30 13.56 -128.00 -1.74 -46.03 16 12 C -0.78 -37.00 4.59 22.73 0.10 -36.89 16 13 C -0.02 -0.76 7.68 22.22 0.17 -0.59 16 14 C -0.24 -10.11 10.05 22.46 0.23 -9.89 16 15 C -0.08 -3.44 10.02 22.22 0.22 -3.22 16 16 C -0.18 -8.83 8.63 22.73 0.20 -8.64 16 17 C 0.17 8.44 5.51 -21.29 -0.12 8.32 16 18 C -0.49 -24.46 7.46 23.46 0.17 -24.28 16 19 H 0.11 4.94 2.96 -2.91 -0.01 4.93 16 20 C 0.04 1.86 5.38 85.26 0.46 2.32 16 21 N -0.82 -41.52 10.87 21.83 0.24 -41.28 16 22 Si 0.96 36.28 29.56 68.60 2.03 38.31 16 23 H -0.23 -7.94 7.11 99.48 0.71 -7.23 16 24 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 25 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 26 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.74 6.51 -2.39 -0.02 1.72 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.90 7.68 -2.38 -0.02 1.89 16 33 H 0.07 1.57 7.81 -2.39 -0.02 1.55 16 34 H 0.06 2.41 3.95 -2.39 -0.01 2.40 16 35 H 0.09 2.86 7.51 -2.39 -0.02 2.84 16 36 H 0.10 3.48 5.64 -2.38 -0.01 3.46 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.33 6.15 -2.39 -0.01 2.31 16 39 H 0.07 2.62 5.27 -2.39 -0.01 2.60 16 40 H 0.12 4.99 7.33 -2.91 -0.02 4.97 16 41 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 43 H 0.11 5.78 6.44 -2.91 -0.02 5.76 16 44 H 0.29 13.24 8.30 -92.72 -0.77 12.47 16 Total: -1.00 -62.92 347.47 1.82 -61.11 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: 1.02 Total: 38.26 kcal Atomic # 6 Polarization: -74.95 SS G_CDS: 5.22 Total: -69.73 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.10 Total: -77.77 kcal Atomic # 8 Polarization: -105.08 SS G_CDS: -5.09 Total: -110.17 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: 120.24 SS G_CDS: -0.25 Total: 119.99 kcal Total: -62.92 1.82 -61.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601419347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.038 kcal (2) G-P(sol) polarization free energy of solvation -62.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds