Wall clock time and date at job start Tue Mar 31 2020 15:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 H 1.09003 * 109.46998 * 304.01687 * 3 2 1 5 5 N 1.46498 * 109.47552 * 64.02119 * 3 2 1 6 6 S 1.65596 * 120.00131 * 248.51306 * 5 3 2 7 7 O 1.42101 * 106.40582 * 46.35037 * 6 5 3 8 8 O 1.42096 * 106.40629 * 179.27454 * 6 5 3 9 9 C 1.76205 * 107.21339 * 292.81601 * 6 5 3 10 10 C 1.37635 * 120.12748 * 112.51914 * 9 6 5 11 11 C 1.38616 * 120.24853 * 180.02562 * 10 9 6 12 12 C 1.38657 * 120.50052 * 359.97438 * 11 10 9 13 13 C 1.37595 * 120.24940 * 0.02562 * 12 11 10 14 14 C 1.40694 * 120.12617 * 292.23781 * 9 6 5 15 15 C 1.41401 * 120.24657 * 359.97438 * 14 9 6 16 16 H 1.07997 * 119.99334 * 334.61822 * 15 14 9 17 17 C 1.39939 * 120.00241 * 154.61659 * 15 14 9 18 18 N 1.30823 * 120.00105 * 162.59257 * 17 15 14 19 19 Si 1.86801 * 120.00108 * 342.59765 * 17 15 14 20 20 H 1.48498 * 109.47295 * 94.90205 * 19 17 15 21 21 H 1.48498 * 109.47308 * 214.90220 * 19 17 15 22 22 H 1.48507 * 109.46980 * 334.90352 * 19 17 15 23 23 C 1.53002 * 109.47172 * 184.02186 * 3 2 1 24 24 C 1.53001 * 109.47385 * 64.99841 * 23 3 2 25 25 C 1.53000 * 109.47398 * 184.99649 * 23 3 2 26 26 O 1.42902 * 109.47199 * 304.99717 * 23 3 2 27 27 H 1.09002 * 109.46985 * 295.08903 * 1 2 3 28 28 H 1.08997 * 109.47710 * 55.09170 * 1 2 3 29 29 H 1.09003 * 109.47221 * 175.09792 * 1 2 3 30 30 H 1.09003 * 109.47138 * 239.99609 * 2 1 3 31 31 H 1.08997 * 109.47591 * 120.00161 * 2 1 3 32 32 H 0.96999 * 120.00213 * 68.50532 * 5 3 2 33 33 H 1.08000 * 119.87923 * 359.97438 * 10 9 6 34 34 H 1.07997 * 119.75286 * 179.97438 * 11 10 9 35 35 H 1.08001 * 119.87439 * 180.02562 * 12 11 10 36 36 H 1.07996 * 120.13293 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99974 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47289 * 59.99901 * 24 23 3 39 39 H 1.08998 * 109.47501 * 180.02562 * 24 23 3 40 40 H 1.09004 * 109.47094 * 300.00311 * 24 23 3 41 41 H 1.09009 * 109.46669 * 60.00239 * 25 23 3 42 42 H 1.09002 * 109.47443 * 179.97438 * 25 23 3 43 43 H 1.08992 * 109.47283 * 300.00294 * 25 23 3 44 44 H 0.96698 * 114.00112 * 300.00152 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6190 1.9767 -0.8518 5 7 1.6323 2.1046 1.2416 6 16 0.5084 3.3201 1.2014 7 8 -0.5514 2.8595 0.3745 8 8 0.3196 3.7368 2.5467 9 6 1.2425 4.6814 0.3571 10 6 0.7642 5.0703 -0.8735 11 6 1.3401 6.1405 -1.5401 12 6 2.4023 6.8313 -0.9768 13 6 2.8967 6.4601 0.2524 14 6 2.3159 5.3787 0.9410 15 6 2.8115 4.9923 2.2077 16 1 2.1683 4.4750 2.9042 17 6 4.1352 5.2801 2.5588 18 7 4.5020 5.2424 3.8140 19 14 5.3784 5.7184 1.2352 20 1 5.4630 7.1953 1.1050 21 1 6.7100 5.1773 1.6081 22 1 4.9504 5.1311 -0.0599 23 6 3.5666 1.4437 -0.1012 24 6 3.9887 0.8651 -1.4533 25 6 4.0850 2.8777 0.0240 26 8 4.1143 0.6457 0.9502 27 1 -0.3633 0.4358 0.9307 28 1 -0.3634 0.5881 -0.8427 29 1 -0.3634 -1.0239 -0.0878 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.0207 1.8311 2.0873 33 1 -0.0624 4.5391 -1.3218 34 1 0.9587 6.4385 -2.5055 35 1 2.8431 7.6639 -1.5049 36 1 3.7243 6.9992 0.6891 37 1 5.4197 5.4416 4.0573 38 1 3.5709 1.4737 -2.2552 39 1 5.0763 0.8656 -1.5252 40 1 3.6194 -0.1566 -1.5425 41 1 3.7844 3.2899 0.9874 42 1 5.1726 2.8785 -0.0476 43 1 3.6673 3.4864 -0.7779 44 1 3.8869 0.9548 1.8378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:13 Heat of formation + Delta-G solvation = -116.373731 kcal Electronic energy + Delta-G solvation = -28872.263389 eV Core-core repulsion = 25108.993520 eV Total energy + Delta-G solvation = -3763.269869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.00897 -37.94715 -36.39230 -34.99232 -34.69386 -34.00228 -31.67810 -31.48392 -30.76929 -30.16987 -26.95559 -25.62034 -25.39946 -22.15807 -21.45545 -21.27211 -20.00519 -18.87304 -17.81787 -17.27205 -16.90107 -16.35542 -15.56069 -15.30649 -14.69183 -14.58482 -14.25167 -14.10809 -13.99579 -13.70114 -13.52445 -12.94115 -12.54821 -12.31792 -12.26571 -12.11408 -12.04557 -11.88844 -11.59054 -11.48676 -11.39068 -11.33500 -11.28433 -11.15592 -10.94711 -10.89678 -10.72412 -10.54045 -10.46649 -10.11871 -10.01711 -9.89626 -9.46378 -9.30415 -8.72993 -8.28340 -7.92734 -7.31213 -4.97138 1.41827 2.03020 2.47072 2.87848 2.99132 3.06336 3.66560 3.80484 4.15050 4.44616 4.59809 4.90802 5.04451 5.12255 5.22356 5.37547 5.42146 5.54668 5.61032 5.79026 5.82446 5.84631 5.90973 5.98278 6.08446 6.14417 6.18535 6.19467 6.29427 6.33003 6.35069 6.44066 6.55593 6.67419 6.68973 6.87421 6.93520 7.03766 7.19093 7.34965 7.48978 7.52903 7.76183 7.92315 8.05909 8.24711 8.43994 9.65315 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.007744 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.736794 B = 3614.967771 C = 4282.099643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.138 3.862 4 H 0.093 0.907 5 N -1.109 6.109 6 S 2.703 3.297 7 O -0.989 6.989 8 O -0.969 6.969 9 C -0.774 4.774 10 C 0.019 3.981 11 C -0.262 4.262 12 C -0.041 4.041 13 C -0.239 4.239 14 C 0.168 3.832 15 C -0.451 4.451 16 H 0.130 0.870 17 C 0.088 3.912 18 N -0.769 5.769 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.225 1.225 23 C 0.122 3.878 24 C -0.140 4.140 25 C -0.197 4.197 26 O -0.559 6.559 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.293 0.707 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -6.537 -7.082 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.029 3.971 4 H 0.111 0.889 5 N -0.865 5.865 6 S 2.799 3.201 7 O -0.979 6.979 8 O -0.960 6.960 9 C -0.869 4.869 10 C 0.000 4.000 11 C -0.282 4.282 12 C -0.060 4.060 13 C -0.259 4.259 14 C 0.163 3.837 15 C -0.477 4.477 16 H 0.148 0.852 17 C -0.137 4.137 18 N -0.390 5.390 19 Si 0.727 3.273 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.147 1.147 23 C 0.080 3.920 24 C -0.197 4.197 25 C -0.254 4.254 26 O -0.365 6.365 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.244 0.756 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.452 -6.908 -7.114 9.927 hybrid contribution 1.283 1.234 0.063 1.781 sum 1.735 -5.674 -7.051 9.215 Atomic orbital electron populations 1.21789 0.95199 1.00585 1.03166 1.21854 0.96299 0.95925 1.02660 1.21361 0.94887 0.94012 0.86794 0.88906 1.55574 1.63513 1.53329 1.14090 1.01089 0.72587 0.72960 0.73441 1.93473 1.52752 1.81222 1.70468 1.93526 1.84930 1.81825 1.35683 1.29782 1.20952 1.25035 1.11094 1.20376 0.94529 0.93650 0.91484 1.20466 1.03294 1.02875 1.01609 1.20796 0.94571 0.96405 0.94205 1.21153 1.04930 1.01656 0.98121 1.16987 0.87980 0.88111 0.90595 1.20448 0.97495 1.31126 0.98644 0.85235 1.26331 1.00038 0.91030 0.96277 1.69682 1.20536 1.30528 1.18217 0.86649 0.77923 0.79178 0.83533 1.20000 1.21582 1.14744 1.21536 0.91056 0.91201 0.88236 1.21798 1.02103 1.01319 0.94501 1.22959 1.00735 0.95428 1.06247 1.86453 1.76916 1.55905 1.17264 0.92712 0.91811 0.93540 0.91210 0.91153 0.75558 0.86956 0.88262 0.88466 0.87957 0.89637 0.91166 0.91968 0.91801 0.88438 0.93029 0.91192 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.67 37.15 0.32 -1.74 16 2 C -0.13 -1.65 5.19 -26.74 -0.14 -1.78 16 3 C 0.14 1.99 1.64 -67.93 -0.11 1.88 16 4 H 0.09 1.38 7.76 -51.93 -0.40 0.98 16 5 N -1.11 -17.93 3.87 -4.89 -0.02 -17.95 16 6 S 2.70 54.08 5.00 -107.50 -0.54 53.54 16 7 O -0.99 -20.13 14.49 -57.17 -0.83 -20.96 16 8 O -0.97 -22.80 15.47 -57.17 -0.88 -23.68 16 9 C -0.77 -16.48 5.88 -38.88 -0.23 -16.71 16 10 C 0.02 0.39 9.53 -39.66 -0.38 0.01 16 11 C -0.26 -5.03 10.05 -39.29 -0.39 -5.43 16 12 C -0.04 -0.81 10.02 -39.66 -0.40 -1.21 16 13 C -0.24 -5.25 7.09 -38.87 -0.28 -5.52 16 14 C 0.17 3.82 4.06 -106.82 -0.43 3.39 16 15 C -0.45 -10.72 7.19 -37.74 -0.27 -10.99 16 16 H 0.13 3.32 5.40 -52.49 -0.28 3.04 16 17 C 0.09 2.02 5.07 -17.34 -0.09 1.94 16 18 N -0.77 -18.21 13.93 55.55 0.77 -17.43 16 19 Si 0.90 18.29 22.01 -169.99 -3.74 14.55 16 20 H -0.27 -5.58 6.66 56.52 0.38 -5.21 16 21 H -0.29 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.22 -4.41 4.99 56.52 0.28 -4.13 16 23 C 0.12 1.75 0.89 -90.62 -0.08 1.67 16 24 C -0.14 -1.73 8.60 37.16 0.32 -1.41 16 25 C -0.20 -3.31 5.23 37.16 0.19 -3.11 16 26 O -0.56 -7.99 12.18 -35.23 -0.43 -8.42 16 27 H 0.05 0.83 7.23 -51.93 -0.38 0.45 16 28 H 0.06 0.93 7.82 -51.93 -0.41 0.52 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.80 6.39 -51.93 -0.33 0.47 16 31 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 32 H 0.41 6.03 7.86 -34.46 -0.27 5.76 16 33 H 0.11 2.06 7.32 -52.49 -0.38 1.67 16 34 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.10 2.23 4.01 -52.49 -0.21 2.02 16 37 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.72 6.48 -51.93 -0.34 0.38 16 41 H 0.10 1.79 3.39 -51.92 -0.18 1.61 16 42 H 0.05 0.85 7.75 -51.93 -0.40 0.45 16 43 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 44 H 0.37 4.77 7.89 45.56 0.36 5.13 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -28.02 338.60 -7.95 -35.97 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -5.42 Total: 18.30 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: -1.96 Total: -39.03 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.75 Total: -35.38 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -2.14 Total: -53.06 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -3.74 Total: 14.55 kcal Atomic # 16 Polarization: 54.08 SS G_CDS: -0.54 Total: 53.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.02 -7.95 -35.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.408 kcal (2) G-P(sol) polarization free energy of solvation -28.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds