Wall clock time and date at job start Tue Mar 31 2020 15:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 H 1.09003 * 109.46998 * 304.01687 * 3 2 1 5 5 N 1.46498 * 109.47552 * 64.02119 * 3 2 1 6 6 S 1.65596 * 120.00131 * 248.51306 * 5 3 2 7 7 O 1.42101 * 106.40582 * 46.35037 * 6 5 3 8 8 O 1.42096 * 106.40629 * 179.27454 * 6 5 3 9 9 C 1.76205 * 107.21339 * 292.81601 * 6 5 3 10 10 C 1.37635 * 120.12748 * 112.51914 * 9 6 5 11 11 C 1.38616 * 120.24853 * 180.02562 * 10 9 6 12 12 C 1.38657 * 120.50052 * 359.97438 * 11 10 9 13 13 C 1.37595 * 120.24940 * 0.02562 * 12 11 10 14 14 C 1.40694 * 120.12617 * 292.23781 * 9 6 5 15 15 C 1.41401 * 120.24657 * 359.97438 * 14 9 6 16 16 H 1.07997 * 119.99334 * 334.61822 * 15 14 9 17 17 C 1.39939 * 120.00241 * 154.61659 * 15 14 9 18 18 N 1.30823 * 120.00105 * 162.59257 * 17 15 14 19 19 Si 1.86801 * 120.00108 * 342.59765 * 17 15 14 20 20 H 1.48498 * 109.47295 * 94.90205 * 19 17 15 21 21 H 1.48498 * 109.47308 * 214.90220 * 19 17 15 22 22 H 1.48507 * 109.46980 * 334.90352 * 19 17 15 23 23 C 1.53002 * 109.47172 * 184.02186 * 3 2 1 24 24 C 1.53001 * 109.47385 * 64.99841 * 23 3 2 25 25 C 1.53000 * 109.47398 * 184.99649 * 23 3 2 26 26 O 1.42902 * 109.47199 * 304.99717 * 23 3 2 27 27 H 1.09002 * 109.46985 * 295.08903 * 1 2 3 28 28 H 1.08997 * 109.47710 * 55.09170 * 1 2 3 29 29 H 1.09003 * 109.47221 * 175.09792 * 1 2 3 30 30 H 1.09003 * 109.47138 * 239.99609 * 2 1 3 31 31 H 1.08997 * 109.47591 * 120.00161 * 2 1 3 32 32 H 0.96999 * 120.00213 * 68.50532 * 5 3 2 33 33 H 1.08000 * 119.87923 * 359.97438 * 10 9 6 34 34 H 1.07997 * 119.75286 * 179.97438 * 11 10 9 35 35 H 1.08001 * 119.87439 * 180.02562 * 12 11 10 36 36 H 1.07996 * 120.13293 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99974 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47289 * 59.99901 * 24 23 3 39 39 H 1.08998 * 109.47501 * 180.02562 * 24 23 3 40 40 H 1.09004 * 109.47094 * 300.00311 * 24 23 3 41 41 H 1.09009 * 109.46669 * 60.00239 * 25 23 3 42 42 H 1.09002 * 109.47443 * 179.97438 * 25 23 3 43 43 H 1.08992 * 109.47283 * 300.00294 * 25 23 3 44 44 H 0.96698 * 114.00112 * 300.00152 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6190 1.9767 -0.8518 5 7 1.6323 2.1046 1.2416 6 16 0.5084 3.3201 1.2014 7 8 -0.5514 2.8595 0.3745 8 8 0.3196 3.7368 2.5467 9 6 1.2425 4.6814 0.3571 10 6 0.7642 5.0703 -0.8735 11 6 1.3401 6.1405 -1.5401 12 6 2.4023 6.8313 -0.9768 13 6 2.8967 6.4601 0.2524 14 6 2.3159 5.3787 0.9410 15 6 2.8115 4.9923 2.2077 16 1 2.1683 4.4750 2.9042 17 6 4.1352 5.2801 2.5588 18 7 4.5020 5.2424 3.8140 19 14 5.3784 5.7184 1.2352 20 1 5.4630 7.1953 1.1050 21 1 6.7100 5.1773 1.6081 22 1 4.9504 5.1311 -0.0599 23 6 3.5666 1.4437 -0.1012 24 6 3.9887 0.8651 -1.4533 25 6 4.0850 2.8777 0.0240 26 8 4.1143 0.6457 0.9502 27 1 -0.3633 0.4358 0.9307 28 1 -0.3634 0.5881 -0.8427 29 1 -0.3634 -1.0239 -0.0878 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.0207 1.8311 2.0873 33 1 -0.0624 4.5391 -1.3218 34 1 0.9587 6.4385 -2.5055 35 1 2.8431 7.6639 -1.5049 36 1 3.7243 6.9992 0.6891 37 1 5.4197 5.4416 4.0573 38 1 3.5709 1.4737 -2.2552 39 1 5.0763 0.8656 -1.5252 40 1 3.6194 -0.1566 -1.5425 41 1 3.7844 3.2899 0.9874 42 1 5.1726 2.8785 -0.0476 43 1 3.6673 3.4864 -0.7779 44 1 3.8869 0.9548 1.8378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601421047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:12 Heat of formation + Delta-G solvation = -137.554690 kcal Electronic energy + Delta-G solvation = -28873.181864 eV Core-core repulsion = 25108.993520 eV Total energy + Delta-G solvation = -3764.188344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21065 -39.55099 -38.06145 -36.67354 -35.90948 -35.68428 -32.84756 -32.77496 -32.32553 -31.77831 -28.15189 -27.17369 -26.66572 -23.77478 -22.92798 -22.56021 -21.16664 -20.38154 -19.52446 -18.76736 -18.27126 -17.86768 -17.12130 -16.73033 -16.04906 -15.99768 -15.70675 -15.55419 -15.25926 -15.17445 -14.99484 -14.57053 -13.92786 -13.72269 -13.60662 -13.37729 -13.28475 -13.11713 -13.03463 -12.99767 -12.87243 -12.85562 -12.73602 -12.52550 -12.42951 -12.27812 -12.24247 -12.05446 -11.61200 -11.55777 -11.37331 -11.23788 -11.10334 -10.86411 -10.01136 -9.89035 -9.58316 -9.02424 -6.71897 -0.15517 0.39184 0.82195 1.23272 1.36529 1.45477 2.02202 2.32561 2.49467 2.98702 3.35213 3.39171 3.73993 3.82000 3.99230 4.11002 4.22076 4.31138 4.33235 4.38176 4.48502 4.66025 4.70140 4.73680 4.81474 4.89008 4.95112 4.95819 5.04369 5.11566 5.18516 5.22594 5.23641 5.34582 5.42058 5.51582 5.59469 5.60622 5.62436 5.71560 5.88245 6.09910 6.20395 6.32172 6.55201 6.71358 6.82382 7.99688 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.007744 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.736794 B = 3614.967771 C = 4282.099643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.134 3.866 4 H 0.091 0.909 5 N -1.099 6.099 6 S 2.717 3.283 7 O -0.993 6.993 8 O -1.010 7.010 9 C -0.782 4.782 10 C 0.008 3.992 11 C -0.251 4.251 12 C -0.038 4.038 13 C -0.265 4.265 14 C 0.162 3.838 15 C -0.474 4.474 16 H 0.101 0.899 17 C 0.065 3.935 18 N -0.810 5.810 19 Si 0.940 3.060 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.215 1.215 23 C 0.127 3.873 24 C -0.140 4.140 25 C -0.198 4.198 26 O -0.562 6.562 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.417 0.583 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.299 0.701 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 -7.179 -9.985 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C 0.027 3.973 4 H 0.109 0.891 5 N -0.858 5.858 6 S 2.813 3.187 7 O -0.983 6.983 8 O -1.001 7.001 9 C -0.875 4.875 10 C -0.012 4.012 11 C -0.271 4.271 12 C -0.057 4.057 13 C -0.284 4.284 14 C 0.158 3.842 15 C -0.501 4.501 16 H 0.119 0.881 17 C -0.156 4.156 18 N -0.432 5.432 19 Si 0.765 3.235 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.137 1.137 23 C 0.085 3.915 24 C -0.197 4.197 25 C -0.255 4.255 26 O -0.369 6.369 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.252 0.748 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.649 -7.549 -10.020 12.562 hybrid contribution 1.084 1.429 0.846 1.983 sum 1.733 -6.120 -9.174 11.163 Atomic orbital electron populations 1.21801 0.95862 1.01603 1.01657 1.21838 0.95595 0.94666 1.04007 1.21583 0.95185 0.94935 0.85635 0.89064 1.55248 1.62997 1.52207 1.15310 1.00505 0.72861 0.73050 0.72301 1.93459 1.53363 1.81237 1.70271 1.93475 1.85850 1.82786 1.37958 1.30021 1.20328 1.25540 1.11643 1.20711 0.95090 0.94255 0.91115 1.20928 1.02158 1.01473 1.02567 1.21206 0.94190 0.96905 0.93364 1.21285 1.05715 1.01986 0.99440 1.17081 0.88392 0.88438 0.90326 1.20266 0.97883 1.32818 0.99144 0.88131 1.26803 1.00830 0.90551 0.97386 1.69706 1.21342 1.32761 1.19438 0.86040 0.76415 0.78764 0.82297 1.20156 1.21177 1.13682 1.21516 0.90625 0.89994 0.89379 1.21841 1.02351 1.02307 0.93235 1.22931 1.00679 0.97005 1.04890 1.86447 1.76995 1.55791 1.17663 0.94698 0.92731 0.91404 0.88922 0.90650 0.74800 0.85241 0.84776 0.85122 0.88269 0.88972 0.90099 0.91857 0.90204 0.90164 0.93109 0.92060 0.77217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.67 71.98 0.62 -3.27 16 2 C -0.12 -2.84 5.19 30.59 0.16 -2.68 16 3 C 0.13 3.68 1.64 44.99 0.07 3.75 16 4 H 0.09 2.55 7.76 -2.39 -0.02 2.53 16 5 N -1.10 -35.49 3.87 -169.39 -0.66 -36.14 16 6 S 2.72 109.70 5.00 -56.49 -0.28 109.41 16 7 O -0.99 -39.93 14.49 -128.00 -1.85 -41.78 16 8 O -1.01 -49.40 15.47 -128.00 -1.98 -51.38 16 9 C -0.78 -32.88 5.88 22.73 0.13 -32.74 16 10 C 0.01 0.30 9.53 22.22 0.21 0.51 16 11 C -0.25 -8.73 10.05 22.46 0.23 -8.50 16 12 C -0.04 -1.40 10.02 22.22 0.22 -1.17 16 13 C -0.26 -11.30 7.09 22.73 0.16 -11.14 16 14 C 0.16 7.39 4.06 -21.29 -0.09 7.30 16 15 C -0.47 -23.29 7.19 23.46 0.17 -23.13 16 16 H 0.10 5.46 5.40 -2.91 -0.02 5.45 16 17 C 0.07 3.08 5.07 85.26 0.43 3.51 16 18 N -0.81 -39.84 13.93 21.82 0.30 -39.54 16 19 Si 0.94 37.58 22.01 68.60 1.51 39.09 16 20 H -0.27 -10.92 6.66 99.48 0.66 -10.26 16 21 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.21 -8.12 4.99 99.48 0.50 -7.62 16 23 C 0.13 3.42 0.89 -10.79 -0.01 3.41 16 24 C -0.14 -3.06 8.60 71.98 0.62 -2.44 16 25 C -0.20 -6.47 5.23 71.98 0.38 -6.09 16 26 O -0.56 -15.21 12.18 -148.98 -1.81 -17.03 16 27 H 0.03 1.01 7.23 -2.39 -0.02 1.00 16 28 H 0.05 1.49 7.82 -2.39 -0.02 1.47 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.77 6.39 -2.39 -0.02 1.76 16 31 H 0.07 1.70 7.70 -2.39 -0.02 1.69 16 32 H 0.42 12.55 7.86 -96.75 -0.76 11.79 16 33 H 0.13 4.40 7.32 -2.91 -0.02 4.37 16 34 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.10 4.25 4.01 -2.91 -0.01 4.24 16 37 H 0.30 13.25 8.30 -92.71 -0.77 12.48 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.49 6.48 -2.38 -0.02 1.48 16 41 H 0.08 2.95 3.39 -2.38 -0.01 2.95 16 42 H 0.05 1.62 7.75 -2.39 -0.02 1.60 16 43 H 0.06 2.07 7.92 -2.39 -0.02 2.05 16 44 H 0.38 9.47 7.89 -74.06 -0.58 8.88 16 Total: -1.00 -60.57 338.60 -2.01 -62.59 By element: Atomic # 1 Polarization: 48.00 SS G_CDS: -0.55 Total: 47.45 kcal Atomic # 6 Polarization: -75.99 SS G_CDS: 3.31 Total: -72.67 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -0.35 Total: -75.68 kcal Atomic # 8 Polarization: -104.54 SS G_CDS: -5.65 Total: -110.19 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 1.51 Total: 39.09 kcal Atomic # 16 Polarization: 109.70 SS G_CDS: -0.28 Total: 109.41 kcal Total: -60.57 -2.01 -62.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.968 kcal (2) G-P(sol) polarization free energy of solvation -60.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds