Wall clock time and date at job start Tue Mar 31 2020 15:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99568 * 2 1 4 4 C 1.52992 * 109.47477 * 276.62252 * 3 2 1 5 5 C 1.53001 * 109.47132 * 301.92589 * 4 3 2 6 6 C 1.53001 * 109.47175 * 61.93180 * 4 3 2 7 7 C 1.53009 * 109.47451 * 181.92752 * 4 3 2 8 8 O 1.42890 * 109.47234 * 183.73458 * 7 4 3 9 9 S 1.65590 * 120.00327 * 180.02562 * 2 1 3 10 10 O 1.42094 * 106.40528 * 163.24060 * 9 2 1 11 11 O 1.42098 * 106.40473 * 30.31989 * 9 2 1 12 12 C 1.76203 * 107.21662 * 276.77965 * 9 2 1 13 13 C 1.37645 * 120.12430 * 116.13459 * 12 9 2 14 14 C 1.38616 * 120.24364 * 180.31949 * 13 12 9 15 15 C 1.38665 * 120.50248 * 359.67314 * 14 13 12 16 16 C 1.37599 * 120.24486 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.13026 * 295.82958 * 12 9 2 18 18 C 1.41396 * 120.23944 * 359.97438 * 17 12 9 19 19 H 1.07992 * 120.00183 * 318.47907 * 18 17 12 20 20 C 1.39946 * 119.99529 * 138.48075 * 18 17 12 21 21 N 1.30824 * 120.00383 * 349.41534 * 20 18 17 22 22 Si 1.86803 * 119.99674 * 169.41921 * 20 18 17 23 23 H 1.48502 * 109.46948 * 185.07657 * 22 20 18 24 24 H 1.48496 * 109.46947 * 305.07277 * 22 20 18 25 25 H 1.48497 * 109.47233 * 65.07551 * 22 20 18 26 26 H 1.09005 * 109.47077 * 269.99719 * 1 2 3 27 27 H 1.09005 * 109.47598 * 29.99783 * 1 2 3 28 28 H 1.08999 * 109.47237 * 149.99483 * 1 2 3 29 29 H 1.09005 * 109.47202 * 36.62354 * 3 2 1 30 30 H 1.09000 * 109.46919 * 156.61951 * 3 2 1 31 31 H 1.08997 * 109.46620 * 60.00313 * 5 4 3 32 32 H 1.08999 * 109.46932 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47290 * 299.99921 * 5 4 3 34 34 H 1.08993 * 109.47410 * 60.00095 * 6 4 3 35 35 H 1.08999 * 109.47203 * 180.02562 * 6 4 3 36 36 H 1.09006 * 109.46674 * 299.99603 * 6 4 3 37 37 H 1.08998 * 109.46852 * 303.73651 * 7 4 3 38 38 H 1.09005 * 109.46497 * 63.73515 * 7 4 3 39 39 H 0.96700 * 114.00218 * 180.02562 * 8 7 4 40 40 H 1.07994 * 119.88019 * 0.02562 * 13 12 9 41 41 H 1.08001 * 119.74858 * 179.69955 * 14 13 12 42 42 H 1.07999 * 119.87292 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.12457 * 180.02562 * 16 15 14 44 44 H 0.96995 * 119.99780 * 353.94690 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3083 1.7937 -1.4328 5 6 3.0136 0.7525 -2.3042 6 6 0.9078 2.0596 -1.9884 7 6 3.1146 3.0941 -1.4386 8 8 3.1446 3.6300 -2.7629 9 16 2.2930 -1.4340 -0.0006 10 8 3.6240 -1.1287 -0.3936 11 8 1.4747 -2.3696 -0.6892 12 6 2.3818 -1.9858 1.6704 13 6 1.7638 -3.1573 2.0448 14 6 1.8264 -3.5903 3.3601 15 6 2.5163 -2.8541 4.3114 16 6 3.1468 -1.6831 3.9582 17 6 3.0899 -1.2339 2.6258 18 6 3.7345 -0.0324 2.2511 19 1 4.2745 0.0222 1.3175 20 6 3.6728 1.0858 3.0903 21 7 2.8561 1.0925 4.1123 22 14 4.7566 2.5690 2.7511 23 1 4.5945 3.5608 3.8444 24 1 6.1761 2.1388 2.6796 25 1 4.3608 3.1864 1.4599 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6647 1.9958 0.6131 30 1 3.1960 1.1118 0.4078 31 1 2.4392 -0.1738 -2.3001 32 1 3.0922 1.1263 -3.3251 33 1 4.0114 0.5631 -1.9084 34 1 0.4054 2.8014 -1.3676 35 1 0.9868 2.4332 -3.0093 36 1 0.3334 1.1332 -1.9843 37 1 2.6482 3.8138 -0.7658 38 1 4.1326 2.8918 -1.1054 39 1 3.6403 4.4565 -2.8416 40 1 1.2241 -3.7389 1.3122 41 1 1.3345 -4.5082 3.6462 42 1 2.5589 -3.2011 5.3332 43 1 3.6839 -1.1115 4.7006 44 1 2.2312 0.3614 4.2385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601425470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:40 Heat of formation + Delta-G solvation = -111.342706 kcal Electronic energy + Delta-G solvation = -28475.700732 eV Core-core repulsion = 24712.649025 eV Total energy + Delta-G solvation = -3763.051707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.57257 -37.94205 -36.40827 -35.98635 -34.94104 -34.06587 -32.98114 -30.27502 -29.55233 -27.84549 -26.76170 -25.82061 -25.35639 -23.71250 -21.90273 -21.25878 -18.95668 -18.42562 -17.90501 -17.25662 -16.89043 -16.29928 -15.57233 -15.07282 -14.85705 -14.62012 -14.34003 -13.97619 -13.81766 -13.45367 -13.28169 -13.10594 -12.85425 -12.76200 -12.41134 -12.33327 -12.22909 -11.63868 -11.58091 -11.31463 -11.27625 -11.23460 -11.10392 -11.02963 -10.82035 -10.67537 -10.56968 -10.49563 -10.31108 -10.09594 -9.79658 -9.77719 -9.38651 -9.27071 -8.41752 -8.26050 -7.77296 -7.37720 -4.89582 1.42035 2.11353 2.54477 2.99850 3.06805 3.21455 3.76108 3.83087 4.34099 4.38781 4.67642 5.00461 5.08958 5.11932 5.29205 5.33966 5.47491 5.67045 5.76470 5.79776 5.81802 5.88935 5.96085 6.00534 6.05701 6.13444 6.16816 6.22791 6.31923 6.42542 6.45591 6.52070 6.58694 6.70746 6.78784 6.81180 7.07496 7.16484 7.26163 7.36913 7.48455 7.62294 7.73461 7.79318 7.93009 8.32658 8.58758 9.89137 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.007333 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.742499 B = 3817.505983 C = 5332.769573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.985 5.985 3 C 0.129 3.871 4 C -0.084 4.084 5 C -0.136 4.136 6 C -0.141 4.141 7 C 0.087 3.913 8 O -0.570 6.570 9 S 2.709 3.291 10 O -0.966 6.966 11 O -0.997 6.997 12 C -0.769 4.769 13 C 0.002 3.998 14 C -0.247 4.247 15 C -0.060 4.060 16 C -0.198 4.198 17 C 0.180 3.820 18 C -0.547 4.547 19 H 0.113 0.887 20 C 0.043 3.957 21 N -0.801 5.801 22 Si 1.053 2.947 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.266 1.266 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.373 0.627 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 5.384 -5.536 8.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.820 5.820 3 C 0.004 3.996 4 C -0.086 4.086 5 C -0.193 4.193 6 C -0.198 4.198 7 C 0.008 3.992 8 O -0.374 6.374 9 S 2.806 3.194 10 O -0.956 6.956 11 O -0.988 6.988 12 C -0.862 4.862 13 C -0.018 4.018 14 C -0.267 4.267 15 C -0.079 4.079 16 C -0.218 4.218 17 C 0.176 3.824 18 C -0.575 4.575 19 H 0.131 0.869 20 C -0.178 4.178 21 N -0.424 5.424 22 Si 0.876 3.124 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.191 1.191 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.219 0.781 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.755 5.948 -5.769 8.470 hybrid contribution -0.379 -1.162 0.715 1.416 sum -2.134 4.786 -5.054 7.280 Atomic orbital electron populations 1.21699 0.79798 1.03496 1.01672 1.57060 1.14106 1.21093 1.89782 1.21567 0.99332 0.85082 0.93645 1.21074 0.95908 0.94245 0.97386 1.21886 1.01387 0.96680 0.99386 1.21972 0.95588 1.01300 1.00936 1.22167 0.99230 0.94451 0.83329 1.86458 1.77768 1.43468 1.29722 1.00988 0.72829 0.71413 0.74195 1.93486 1.35960 1.83625 1.82539 1.93436 1.70289 1.61731 1.73314 1.30261 1.20317 1.11170 1.24472 1.20395 0.92728 0.92999 0.95687 1.20575 1.09828 1.02466 0.93813 1.20924 0.94997 0.94576 0.97438 1.21449 1.05081 0.97582 0.97685 1.17103 0.84843 0.90141 0.90331 1.21234 1.30426 0.96167 1.09711 0.86945 1.26962 0.97308 1.02392 0.91172 1.70439 1.13559 1.34737 1.23699 0.83828 0.76413 0.74525 0.77663 1.19569 1.19487 1.19137 0.93239 0.90316 0.90788 0.91037 0.86995 0.94419 0.92465 0.90485 0.93179 0.92323 0.91824 0.93620 0.93065 0.78077 0.87110 0.88174 0.88324 0.87167 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 9.68 59.85 0.58 1.82 16 2 N -0.99 -18.41 2.53 -121.75 -0.31 -18.71 16 3 C 0.13 2.30 3.95 -4.05 -0.02 2.29 16 4 C -0.08 -1.33 0.68 -154.51 -0.10 -1.44 16 5 C -0.14 -2.35 6.87 37.16 0.26 -2.09 16 6 C -0.14 -1.98 7.01 37.16 0.26 -1.72 16 7 C 0.09 1.20 5.92 37.16 0.22 1.42 16 8 O -0.57 -7.13 12.31 -35.23 -0.43 -7.57 16 9 S 2.71 59.24 3.92 -107.50 -0.42 58.81 16 10 O -0.97 -22.41 12.04 -57.18 -0.69 -23.10 16 11 O -1.00 -22.75 15.72 -57.18 -0.90 -23.64 16 12 C -0.77 -18.09 5.96 -38.87 -0.23 -18.32 16 13 C 0.00 0.04 9.53 -39.66 -0.38 -0.34 16 14 C -0.25 -5.19 10.05 -39.28 -0.39 -5.59 16 15 C -0.06 -1.29 10.02 -39.66 -0.40 -1.69 16 16 C -0.20 -4.68 7.75 -38.88 -0.30 -4.98 16 17 C 0.18 4.42 5.08 -106.83 -0.54 3.88 16 18 C -0.55 -13.01 5.77 -37.74 -0.22 -13.23 16 19 H 0.11 2.71 4.75 -52.49 -0.25 2.46 16 20 C 0.04 0.98 5.13 -17.34 -0.09 0.89 16 21 N -0.80 -19.23 12.75 55.55 0.71 -18.52 16 22 Si 1.05 19.50 29.44 -169.99 -5.00 14.50 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 25 H -0.27 -4.33 7.11 56.52 0.40 -3.93 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.03 5.24 -51.93 -0.27 0.76 16 28 H 0.07 1.15 7.09 -51.93 -0.37 0.78 16 29 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 30 H 0.11 2.20 3.66 -51.93 -0.19 2.01 16 31 H 0.04 0.68 6.31 -51.93 -0.33 0.35 16 32 H 0.06 0.91 7.79 -51.93 -0.40 0.51 16 33 H 0.08 1.41 7.07 -51.93 -0.37 1.05 16 34 H 0.05 0.64 8.11 -51.93 -0.42 0.21 16 35 H 0.06 0.82 7.59 -51.93 -0.39 0.42 16 36 H 0.06 0.89 5.45 -51.93 -0.28 0.61 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.37 2.90 9.12 45.56 0.42 3.32 16 40 H 0.11 2.29 7.33 -52.49 -0.38 1.91 16 41 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.11 2.62 7.18 -52.49 -0.38 2.24 16 44 H 0.30 7.40 6.24 -40.82 -0.25 7.14 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -28.69 345.03 -8.41 -37.11 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -5.21 Total: 15.01 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: -1.36 Total: -39.09 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.40 Total: -37.23 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -2.02 Total: -54.31 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.00 Total: 14.50 kcal Atomic # 16 Polarization: 59.24 SS G_CDS: -0.42 Total: 58.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.69 -8.41 -37.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.236 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds