Wall clock time and date at job start Tue Mar 31 2020 15:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99568 * 2 1 4 4 C 1.52992 * 109.47477 * 276.62252 * 3 2 1 5 5 C 1.53001 * 109.47132 * 301.92589 * 4 3 2 6 6 C 1.53001 * 109.47175 * 61.93180 * 4 3 2 7 7 C 1.53009 * 109.47451 * 181.92752 * 4 3 2 8 8 O 1.42890 * 109.47234 * 183.73458 * 7 4 3 9 9 S 1.65590 * 120.00327 * 180.02562 * 2 1 3 10 10 O 1.42094 * 106.40528 * 163.24060 * 9 2 1 11 11 O 1.42098 * 106.40473 * 30.31989 * 9 2 1 12 12 C 1.76203 * 107.21662 * 276.77965 * 9 2 1 13 13 C 1.37645 * 120.12430 * 116.13459 * 12 9 2 14 14 C 1.38616 * 120.24364 * 180.31949 * 13 12 9 15 15 C 1.38665 * 120.50248 * 359.67314 * 14 13 12 16 16 C 1.37599 * 120.24486 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.13026 * 295.82958 * 12 9 2 18 18 C 1.41396 * 120.23944 * 359.97438 * 17 12 9 19 19 H 1.07992 * 120.00183 * 318.47907 * 18 17 12 20 20 C 1.39946 * 119.99529 * 138.48075 * 18 17 12 21 21 N 1.30824 * 120.00383 * 349.41534 * 20 18 17 22 22 Si 1.86803 * 119.99674 * 169.41921 * 20 18 17 23 23 H 1.48502 * 109.46948 * 185.07657 * 22 20 18 24 24 H 1.48496 * 109.46947 * 305.07277 * 22 20 18 25 25 H 1.48497 * 109.47233 * 65.07551 * 22 20 18 26 26 H 1.09005 * 109.47077 * 269.99719 * 1 2 3 27 27 H 1.09005 * 109.47598 * 29.99783 * 1 2 3 28 28 H 1.08999 * 109.47237 * 149.99483 * 1 2 3 29 29 H 1.09005 * 109.47202 * 36.62354 * 3 2 1 30 30 H 1.09000 * 109.46919 * 156.61951 * 3 2 1 31 31 H 1.08997 * 109.46620 * 60.00313 * 5 4 3 32 32 H 1.08999 * 109.46932 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47290 * 299.99921 * 5 4 3 34 34 H 1.08993 * 109.47410 * 60.00095 * 6 4 3 35 35 H 1.08999 * 109.47203 * 180.02562 * 6 4 3 36 36 H 1.09006 * 109.46674 * 299.99603 * 6 4 3 37 37 H 1.08998 * 109.46852 * 303.73651 * 7 4 3 38 38 H 1.09005 * 109.46497 * 63.73515 * 7 4 3 39 39 H 0.96700 * 114.00218 * 180.02562 * 8 7 4 40 40 H 1.07994 * 119.88019 * 0.02562 * 13 12 9 41 41 H 1.08001 * 119.74858 * 179.69955 * 14 13 12 42 42 H 1.07999 * 119.87292 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.12457 * 180.02562 * 16 15 14 44 44 H 0.96995 * 119.99780 * 353.94690 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3083 1.7937 -1.4328 5 6 3.0136 0.7525 -2.3042 6 6 0.9078 2.0596 -1.9884 7 6 3.1146 3.0941 -1.4386 8 8 3.1446 3.6300 -2.7629 9 16 2.2930 -1.4340 -0.0006 10 8 3.6240 -1.1287 -0.3936 11 8 1.4747 -2.3696 -0.6892 12 6 2.3818 -1.9858 1.6704 13 6 1.7638 -3.1573 2.0448 14 6 1.8264 -3.5903 3.3601 15 6 2.5163 -2.8541 4.3114 16 6 3.1468 -1.6831 3.9582 17 6 3.0899 -1.2339 2.6258 18 6 3.7345 -0.0324 2.2511 19 1 4.2745 0.0222 1.3175 20 6 3.6728 1.0858 3.0903 21 7 2.8561 1.0925 4.1123 22 14 4.7566 2.5690 2.7511 23 1 4.5945 3.5608 3.8444 24 1 6.1761 2.1388 2.6796 25 1 4.3608 3.1864 1.4599 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6647 1.9958 0.6131 30 1 3.1960 1.1118 0.4078 31 1 2.4392 -0.1738 -2.3001 32 1 3.0922 1.1263 -3.3251 33 1 4.0114 0.5631 -1.9084 34 1 0.4054 2.8014 -1.3676 35 1 0.9868 2.4332 -3.0093 36 1 0.3334 1.1332 -1.9843 37 1 2.6482 3.8138 -0.7658 38 1 4.1326 2.8918 -1.1054 39 1 3.6403 4.4565 -2.8416 40 1 1.2241 -3.7389 1.3122 41 1 1.3345 -4.5082 3.6462 42 1 2.5589 -3.2011 5.3332 43 1 3.6839 -1.1115 4.7006 44 1 2.2312 0.3614 4.2385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601425470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:39 Heat of formation + Delta-G solvation = -130.538077 kcal Electronic energy + Delta-G solvation = -28476.533106 eV Core-core repulsion = 24712.649025 eV Total energy + Delta-G solvation = -3763.884081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.84259 -39.64164 -38.14800 -37.13434 -36.70588 -35.78835 -34.25220 -32.01180 -31.30303 -29.10101 -28.09486 -27.14869 -26.87295 -25.08280 -23.62455 -23.00231 -20.33977 -20.10084 -19.40602 -18.69550 -18.13774 -17.93962 -17.09730 -16.70070 -16.27260 -15.90830 -15.84650 -15.53696 -15.29814 -14.98021 -14.74876 -14.60954 -14.32861 -14.14400 -13.97224 -13.64423 -13.45778 -13.27150 -13.11972 -12.98668 -12.89513 -12.74572 -12.71877 -12.43975 -12.35264 -12.11672 -12.01591 -11.87767 -11.63981 -11.50147 -11.29434 -11.04455 -10.97526 -10.76909 -10.09246 -9.76257 -9.54898 -9.16465 -6.70370 -0.25170 0.35014 0.79768 1.50687 1.59025 1.78494 2.19769 2.30763 2.63351 2.92548 3.25953 3.40624 3.69613 3.83278 3.90907 4.13533 4.15187 4.20312 4.28392 4.50275 4.56291 4.57618 4.65243 4.66207 4.73705 4.79702 4.83083 4.90749 4.96851 5.02080 5.04526 5.17280 5.20478 5.27352 5.33206 5.42751 5.47476 5.53134 5.56462 5.73707 5.81555 5.85218 6.00396 6.15803 6.55848 6.82501 7.01048 8.09020 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.007333 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.742499 B = 3817.505983 C = 5332.769573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.982 5.982 3 C 0.126 3.874 4 C -0.085 4.085 5 C -0.134 4.134 6 C -0.137 4.137 7 C 0.089 3.911 8 O -0.579 6.579 9 S 2.718 3.282 10 O -0.985 6.985 11 O -1.011 7.011 12 C -0.788 4.788 13 C -0.016 4.016 14 C -0.243 4.243 15 C -0.059 4.059 16 C -0.221 4.221 17 C 0.156 3.844 18 C -0.559 4.559 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.819 5.819 22 Si 1.079 2.921 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.229 1.229 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.020 0.980 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.395 0.605 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 6.587 -5.987 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.819 5.819 3 C 0.000 4.000 4 C -0.087 4.087 5 C -0.191 4.191 6 C -0.194 4.194 7 C 0.010 3.990 8 O -0.387 6.387 9 S 2.815 3.185 10 O -0.976 6.976 11 O -1.002 7.002 12 C -0.880 4.880 13 C -0.035 4.035 14 C -0.263 4.263 15 C -0.077 4.077 16 C -0.241 4.241 17 C 0.152 3.848 18 C -0.587 4.587 19 H 0.122 0.878 20 C -0.195 4.195 21 N -0.443 5.443 22 Si 0.896 3.104 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.152 1.152 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.245 0.755 40 H 0.141 0.859 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.117 0.883 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.556 7.138 -6.225 9.810 hybrid contribution -0.163 -1.638 0.842 1.849 sum -2.719 5.500 -5.383 8.162 Atomic orbital electron populations 1.21935 0.77988 1.05062 1.02242 1.56851 1.15235 1.20323 1.89520 1.21637 0.98391 0.84679 0.95279 1.21056 0.97331 0.94767 0.95567 1.21852 1.00308 0.96654 1.00328 1.21931 0.94400 1.01692 1.01339 1.22050 0.98747 0.93831 0.84338 1.86400 1.78385 1.45011 1.28862 1.00585 0.72500 0.71912 0.73550 1.93453 1.37374 1.84045 1.82700 1.93405 1.70476 1.62835 1.73436 1.30618 1.20401 1.11825 1.25194 1.20729 0.92995 0.92970 0.96854 1.21008 1.08859 1.03296 0.93133 1.21293 0.93712 0.93523 0.99188 1.21494 1.06407 0.98762 0.97399 1.17410 0.85506 0.90863 0.91061 1.21245 1.31019 0.96613 1.09827 0.87821 1.28046 0.97238 1.04090 0.90160 1.70540 1.14466 1.34499 1.24803 0.83573 0.75158 0.72292 0.79368 1.19503 1.19396 1.15216 0.93176 0.87260 0.90770 0.89792 0.88989 0.96073 0.91417 0.92314 0.91424 0.92024 0.92080 0.91853 0.93517 0.75546 0.85903 0.84719 0.85122 0.88277 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.19 9.68 127.77 1.24 3.42 16 2 N -0.98 -36.18 2.53 -539.12 -1.37 -37.54 16 3 C 0.13 4.32 3.95 86.38 0.34 4.66 16 4 C -0.09 -2.54 0.68 -52.18 -0.04 -2.58 16 5 C -0.13 -4.56 6.87 71.98 0.49 -4.06 16 6 C -0.14 -3.47 7.01 71.98 0.50 -2.96 16 7 C 0.09 2.22 5.92 71.99 0.43 2.65 16 8 O -0.58 -12.77 12.31 -148.98 -1.83 -14.61 16 9 S 2.72 120.13 3.92 -56.49 -0.22 119.91 16 10 O -0.99 -46.87 12.04 -128.00 -1.54 -48.42 16 11 O -1.01 -46.32 15.72 -128.00 -2.01 -48.33 16 12 C -0.79 -37.48 5.96 22.73 0.14 -37.34 16 13 C -0.02 -0.70 9.53 22.22 0.21 -0.49 16 14 C -0.24 -9.83 10.05 22.46 0.23 -9.61 16 15 C -0.06 -2.44 10.02 22.22 0.22 -2.22 16 16 C -0.22 -10.55 7.75 22.73 0.18 -10.37 16 17 C 0.16 7.78 5.08 -21.29 -0.11 7.67 16 18 C -0.56 -27.06 5.77 23.46 0.14 -26.92 16 19 H 0.10 5.13 4.75 -2.91 -0.01 5.12 16 20 C 0.02 0.98 5.13 85.26 0.44 1.42 16 21 N -0.82 -39.78 12.75 21.83 0.28 -39.50 16 22 Si 1.08 38.25 29.44 68.60 2.02 40.26 16 23 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 24 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 25 H -0.23 -6.70 7.11 99.48 0.71 -5.99 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.11 2.60 5.24 -2.38 -0.01 2.59 16 28 H 0.07 2.23 7.09 -2.39 -0.02 2.21 16 29 H 0.08 2.64 8.12 -2.38 -0.02 2.62 16 30 H 0.09 3.59 3.66 -2.39 -0.01 3.58 16 31 H 0.02 0.75 6.31 -2.39 -0.02 0.74 16 32 H 0.07 2.10 7.79 -2.39 -0.02 2.08 16 33 H 0.06 2.18 7.07 -2.39 -0.02 2.16 16 34 H 0.07 1.47 8.11 -2.39 -0.02 1.46 16 35 H 0.06 1.54 7.59 -2.39 -0.02 1.52 16 36 H 0.06 1.56 5.45 -2.38 -0.01 1.55 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.40 4.86 9.12 -74.06 -0.68 4.18 16 40 H 0.12 5.00 7.33 -2.91 -0.02 4.98 16 41 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 43 H 0.10 4.85 7.18 -2.91 -0.02 4.83 16 44 H 0.29 14.47 6.24 -92.71 -0.58 13.90 16 Total: -1.00 -62.34 345.03 0.27 -62.07 By element: Atomic # 1 Polarization: 42.34 SS G_CDS: 0.55 Total: 42.89 kcal Atomic # 6 Polarization: -81.13 SS G_CDS: 4.40 Total: -76.72 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.09 Total: -77.05 kcal Atomic # 8 Polarization: -105.97 SS G_CDS: -5.39 Total: -111.36 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.02 Total: 40.26 kcal Atomic # 16 Polarization: 120.13 SS G_CDS: -0.22 Total: 119.91 kcal Total: -62.34 0.27 -62.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.469 kcal (2) G-P(sol) polarization free energy of solvation -62.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds