Wall clock time and date at job start Tue Mar 31 2020 15:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47590 * 2 1 4 4 C 1.53002 * 109.46906 * 59.99854 * 3 2 1 5 5 C 1.52994 * 109.47507 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47487 * 185.00165 * 5 3 2 7 7 S 1.65600 * 120.00411 * 162.73482 * 6 5 3 8 8 O 1.42101 * 106.40005 * 311.70250 * 7 6 5 9 9 O 1.42099 * 106.40334 * 178.78083 * 7 6 5 10 10 C 1.76198 * 107.21772 * 65.23800 * 7 6 5 11 11 C 1.37632 * 120.12967 * 245.32553 * 10 7 6 12 12 C 1.38615 * 120.24786 * 179.70429 * 11 10 7 13 13 C 1.38659 * 120.50009 * 0.02562 * 12 11 10 14 14 C 1.37595 * 120.25208 * 0.02649 * 13 12 11 15 15 C 1.40704 * 120.12399 * 65.05311 * 10 7 6 16 16 C 1.41401 * 120.24277 * 0.24829 * 15 10 7 17 17 H 1.07993 * 120.00083 * 328.81582 * 16 15 10 18 18 C 1.39950 * 119.99533 * 148.81920 * 16 15 10 19 19 N 1.30819 * 119.99989 * 346.98688 * 18 16 15 20 20 Si 1.86799 * 119.99823 * 166.98799 * 18 16 15 21 21 H 1.48501 * 109.47122 * 89.99654 * 20 18 16 22 22 H 1.48501 * 109.47306 * 209.99824 * 20 18 16 23 23 H 1.48502 * 109.46913 * 329.99966 * 20 18 16 24 24 O 1.42905 * 109.47031 * 300.00558 * 3 2 1 25 25 C 1.42902 * 113.99916 * 299.99589 * 24 3 2 26 26 H 1.09003 * 109.47244 * 59.99581 * 1 2 3 27 27 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46918 * 299.99664 * 1 2 3 29 29 H 1.09005 * 109.46953 * 239.99616 * 2 1 3 30 30 H 1.08996 * 109.47025 * 120.00734 * 2 1 3 31 31 H 1.09003 * 109.46928 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47454 * 300.00096 * 4 3 2 33 33 H 1.09003 * 109.46707 * 60.00329 * 4 3 2 34 34 H 1.08998 * 109.47443 * 64.99356 * 5 3 2 35 35 H 1.09004 * 109.46743 * 305.00174 * 5 3 2 36 36 H 0.97003 * 119.99536 * 342.73624 * 6 5 3 37 37 H 1.07995 * 119.87973 * 359.73129 * 11 10 7 38 38 H 1.08002 * 119.74938 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.87221 * 180.02562 * 13 12 11 40 40 H 1.07995 * 120.12918 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99889 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.47131 * 59.99750 * 25 24 3 43 43 H 1.08990 * 109.47094 * 180.02562 * 25 24 3 44 44 H 1.09006 * 109.47238 * 300.00438 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 3.5700 1.4424 -0.0006 6 7 4.0585 2.8182 0.1198 7 16 5.6259 3.1040 0.5714 8 8 5.8678 2.2955 1.7147 9 8 5.7937 4.5150 0.5677 10 6 6.6604 2.4765 -0.7095 11 6 7.5001 1.4145 -0.4614 12 6 8.3105 0.9150 -1.4689 13 6 8.2859 1.4778 -2.7359 14 6 7.4551 2.5407 -3.0063 15 6 6.6271 3.0555 -1.9914 16 6 5.7681 4.1465 -2.2580 17 1 4.8280 4.2342 -1.7338 18 6 6.1362 5.1127 -3.2012 19 7 7.3650 5.1559 -3.6479 20 14 4.8729 6.3405 -3.8223 21 1 4.8832 7.5441 -2.9525 22 1 5.2072 6.7332 -5.2149 23 1 3.5239 5.7203 -3.7931 24 8 1.5637 2.1161 -1.1668 25 6 1.9853 1.5198 -2.3951 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8931 3.1914 1.2490 32 1 0.4401 2.1637 1.2493 33 1 1.8935 1.6497 2.1392 34 1 3.9330 1.0081 -0.9322 35 1 3.9337 0.8527 0.8410 36 1 3.4638 3.5619 -0.0651 37 1 7.5274 0.9685 0.5217 38 1 8.9667 0.0817 -1.2653 39 1 8.9214 1.0802 -3.5136 40 1 7.4379 2.9778 -3.9937 41 1 7.6202 5.8257 -4.3014 42 1 1.6208 0.4937 -2.4448 43 1 1.5829 2.0897 -3.2325 44 1 3.0742 1.5213 -2.4448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601430796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:06 Heat of formation + Delta-G solvation = -112.927907 kcal Electronic energy + Delta-G solvation = -27658.247064 eV Core-core repulsion = 23895.126617 eV Total energy + Delta-G solvation = -3763.120447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.39836 -37.59850 -36.20182 -34.81277 -34.57114 -33.86685 -33.31220 -30.24406 -29.60070 -29.47579 -26.91312 -25.90159 -25.51077 -23.10843 -21.66298 -21.15268 -19.82737 -18.56779 -17.69487 -16.91602 -16.61374 -16.05321 -15.72042 -15.36093 -15.26034 -14.66841 -14.61541 -14.30921 -13.96835 -13.29216 -13.25423 -13.17431 -12.73881 -12.56749 -12.41628 -12.27261 -11.98674 -11.88038 -11.64109 -11.56819 -11.47595 -11.26225 -11.16898 -11.11617 -11.01233 -10.97604 -10.84237 -10.68440 -10.52870 -10.30512 -9.89276 -9.51053 -9.41251 -9.33730 -8.71245 -8.04658 -7.60366 -7.03117 -4.75044 1.55319 2.33044 2.72676 2.98338 3.02996 3.12157 3.79740 3.80335 4.04548 4.41380 4.68041 4.74783 4.81507 4.91067 5.22195 5.29164 5.37705 5.48607 5.55335 5.63040 5.65866 5.69020 5.73895 5.83934 5.89415 5.94779 5.98385 6.02521 6.11424 6.20399 6.21616 6.32294 6.37174 6.41716 6.79023 6.92299 7.07158 7.30138 7.34832 7.47548 7.57332 7.68534 7.78303 7.89123 8.27692 8.51559 8.63282 9.92002 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.005874 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.366542 B = 4765.458413 C = 5675.623315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.110 3.890 4 C -0.140 4.140 5 C 0.099 3.901 6 N -1.115 6.115 7 S 2.700 3.300 8 O -0.999 6.999 9 O -0.963 6.963 10 C -0.775 4.775 11 C -0.004 4.004 12 C -0.250 4.250 13 C -0.076 4.076 14 C -0.157 4.157 15 C 0.190 3.810 16 C -0.448 4.448 17 H 0.088 0.912 18 C 0.083 3.917 19 N -0.777 5.777 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.254 1.254 24 O -0.371 6.371 25 C 0.020 3.980 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.415 0.585 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.287 0.713 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -7.052 1.469 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.069 3.931 4 C -0.197 4.197 5 C -0.028 4.028 6 N -0.872 5.872 7 S 2.798 3.202 8 O -0.990 6.990 9 O -0.953 6.953 10 C -0.870 4.870 11 C -0.023 4.023 12 C -0.271 4.271 13 C -0.095 4.095 14 C -0.177 4.177 15 C 0.185 3.815 16 C -0.477 4.477 17 H 0.106 0.894 18 C -0.138 4.138 19 N -0.400 5.400 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.178 1.178 24 O -0.290 6.290 25 C -0.076 4.076 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.249 0.751 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.101 0.899 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.317 -6.475 2.176 12.374 hybrid contribution -0.087 0.245 -1.321 1.347 sum -10.404 -6.230 0.855 12.157 Atomic orbital electron populations 1.21718 0.94975 1.01136 1.02573 1.22088 0.97237 0.96413 1.03087 1.21691 0.91890 0.92241 0.87296 1.21790 1.01498 1.01493 0.94896 1.21717 0.94776 0.83849 1.02492 1.55572 1.30769 1.12563 1.88333 1.01085 0.72208 0.73301 0.73648 1.93439 1.85094 1.71573 1.48867 1.93548 1.84655 1.29635 1.87501 1.29936 1.24655 1.18160 1.14247 1.20263 0.92485 0.92339 0.97249 1.20484 1.06742 1.05006 0.94832 1.20888 0.97023 0.95917 0.95677 1.21400 0.99951 0.96637 0.99670 1.16987 0.88340 0.88150 0.88029 1.19824 1.04747 1.04526 1.18573 0.89361 1.25913 0.95745 0.98280 0.93911 1.69783 1.17191 1.30542 1.22471 0.86230 0.81367 0.80572 0.78404 1.18677 1.19878 1.17771 1.87948 1.73927 1.53946 1.13197 1.22850 1.00680 0.97714 0.86347 0.92152 0.93083 0.92329 0.91239 0.90666 0.91397 0.91633 0.90928 0.91385 0.89915 0.75062 0.87461 0.88753 0.88847 0.86317 0.90172 0.94187 0.89869 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.41 37.16 0.35 -1.01 16 2 C -0.15 -1.55 4.61 -26.73 -0.12 -1.67 16 3 C 0.11 1.39 0.48 -90.63 -0.04 1.34 16 4 C -0.14 -1.64 8.27 37.16 0.31 -1.33 16 5 C 0.10 1.48 4.96 -4.05 -0.02 1.46 16 6 N -1.11 -19.60 4.49 -10.62 -0.05 -19.65 16 7 S 2.70 59.01 4.97 -107.50 -0.53 58.47 16 8 O -1.00 -22.52 16.40 -57.17 -0.94 -23.46 16 9 O -0.96 -24.17 16.60 -57.17 -0.95 -25.11 16 10 C -0.77 -18.39 5.94 -38.87 -0.23 -18.62 16 11 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 12 C -0.25 -5.41 10.05 -39.29 -0.39 -5.81 16 13 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 14 C -0.16 -3.82 8.65 -38.87 -0.34 -4.16 16 15 C 0.19 4.77 5.51 -106.82 -0.59 4.18 16 16 C -0.45 -11.16 7.55 -37.74 -0.28 -11.45 16 17 H 0.09 2.07 5.88 -52.49 -0.31 1.76 16 18 C 0.08 2.00 5.19 -17.34 -0.09 1.91 16 19 N -0.78 -19.20 11.14 55.55 0.62 -18.58 16 20 Si 0.91 18.13 29.58 -169.99 -5.03 13.10 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.25 -4.88 7.11 56.52 0.40 -4.48 16 24 O -0.37 -5.16 9.45 -35.23 -0.33 -5.49 16 25 C 0.02 0.26 10.21 101.05 1.03 1.29 16 26 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 29 H 0.07 0.70 6.54 -51.93 -0.34 0.36 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.85 6.95 -51.93 -0.36 0.49 16 32 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.03 6.28 -51.93 -0.33 0.71 16 35 H 0.08 1.20 7.70 -51.93 -0.40 0.80 16 36 H 0.41 6.92 7.41 -34.47 -0.26 6.66 16 37 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.12 2.92 6.50 -52.49 -0.34 2.58 16 41 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 42 H 0.04 0.43 6.42 -51.93 -0.33 0.10 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.81 6.31 -51.93 -0.33 0.48 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -30.31 359.17 -9.11 -39.42 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.11 Total: 12.29 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: -1.20 Total: -36.40 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.57 Total: -38.23 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -2.22 Total: -54.06 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: 59.01 SS G_CDS: -0.53 Total: 58.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.31 -9.11 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601430796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.511 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds