Wall clock time and date at job start Tue Mar 31 2020 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47590 * 2 1 4 4 C 1.53002 * 109.46906 * 59.99854 * 3 2 1 5 5 C 1.52994 * 109.47507 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47487 * 185.00165 * 5 3 2 7 7 S 1.65600 * 120.00411 * 162.73482 * 6 5 3 8 8 O 1.42101 * 106.40005 * 311.70250 * 7 6 5 9 9 O 1.42099 * 106.40334 * 178.78083 * 7 6 5 10 10 C 1.76198 * 107.21772 * 65.23800 * 7 6 5 11 11 C 1.37632 * 120.12967 * 245.32553 * 10 7 6 12 12 C 1.38615 * 120.24786 * 179.70429 * 11 10 7 13 13 C 1.38659 * 120.50009 * 0.02562 * 12 11 10 14 14 C 1.37595 * 120.25208 * 0.02649 * 13 12 11 15 15 C 1.40704 * 120.12399 * 65.05311 * 10 7 6 16 16 C 1.41401 * 120.24277 * 0.24829 * 15 10 7 17 17 H 1.07993 * 120.00083 * 328.81582 * 16 15 10 18 18 C 1.39950 * 119.99533 * 148.81920 * 16 15 10 19 19 N 1.30819 * 119.99989 * 346.98688 * 18 16 15 20 20 Si 1.86799 * 119.99823 * 166.98799 * 18 16 15 21 21 H 1.48501 * 109.47122 * 89.99654 * 20 18 16 22 22 H 1.48501 * 109.47306 * 209.99824 * 20 18 16 23 23 H 1.48502 * 109.46913 * 329.99966 * 20 18 16 24 24 O 1.42905 * 109.47031 * 300.00558 * 3 2 1 25 25 C 1.42902 * 113.99916 * 299.99589 * 24 3 2 26 26 H 1.09003 * 109.47244 * 59.99581 * 1 2 3 27 27 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46918 * 299.99664 * 1 2 3 29 29 H 1.09005 * 109.46953 * 239.99616 * 2 1 3 30 30 H 1.08996 * 109.47025 * 120.00734 * 2 1 3 31 31 H 1.09003 * 109.46928 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47454 * 300.00096 * 4 3 2 33 33 H 1.09003 * 109.46707 * 60.00329 * 4 3 2 34 34 H 1.08998 * 109.47443 * 64.99356 * 5 3 2 35 35 H 1.09004 * 109.46743 * 305.00174 * 5 3 2 36 36 H 0.97003 * 119.99536 * 342.73624 * 6 5 3 37 37 H 1.07995 * 119.87973 * 359.73129 * 11 10 7 38 38 H 1.08002 * 119.74938 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.87221 * 180.02562 * 13 12 11 40 40 H 1.07995 * 120.12918 * 179.97438 * 14 13 12 41 41 H 0.97000 * 119.99889 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.47131 * 59.99750 * 25 24 3 43 43 H 1.08990 * 109.47094 * 180.02562 * 25 24 3 44 44 H 1.09006 * 109.47238 * 300.00438 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 3.5700 1.4424 -0.0006 6 7 4.0585 2.8182 0.1198 7 16 5.6259 3.1040 0.5714 8 8 5.8678 2.2955 1.7147 9 8 5.7937 4.5150 0.5677 10 6 6.6604 2.4765 -0.7095 11 6 7.5001 1.4145 -0.4614 12 6 8.3105 0.9150 -1.4689 13 6 8.2859 1.4778 -2.7359 14 6 7.4551 2.5407 -3.0063 15 6 6.6271 3.0555 -1.9914 16 6 5.7681 4.1465 -2.2580 17 1 4.8280 4.2342 -1.7338 18 6 6.1362 5.1127 -3.2012 19 7 7.3650 5.1559 -3.6479 20 14 4.8729 6.3405 -3.8223 21 1 4.8832 7.5441 -2.9525 22 1 5.2072 6.7332 -5.2149 23 1 3.5239 5.7203 -3.7931 24 8 1.5637 2.1161 -1.1668 25 6 1.9853 1.5198 -2.3951 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8931 3.1914 1.2490 32 1 0.4401 2.1637 1.2493 33 1 1.8935 1.6497 2.1392 34 1 3.9330 1.0081 -0.9322 35 1 3.9337 0.8527 0.8410 36 1 3.4638 3.5619 -0.0651 37 1 7.5274 0.9685 0.5217 38 1 8.9667 0.0817 -1.2653 39 1 8.9214 1.0802 -3.5136 40 1 7.4379 2.9778 -3.9937 41 1 7.6202 5.8257 -4.3014 42 1 1.6208 0.4937 -2.4448 43 1 1.5829 2.0897 -3.2325 44 1 3.0742 1.5213 -2.4448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601430796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:05 Heat of formation + Delta-G solvation = -132.808097 kcal Electronic energy + Delta-G solvation = -27659.109134 eV Core-core repulsion = 23895.126617 eV Total energy + Delta-G solvation = -3763.982517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43046 -39.38022 -38.02616 -36.66136 -35.86292 -35.60123 -34.33288 -32.02671 -31.38768 -30.43391 -28.03245 -27.33262 -26.87793 -24.07045 -23.43728 -22.94761 -20.88168 -20.16411 -19.49611 -18.51558 -18.08279 -17.34122 -17.26983 -16.90738 -16.33134 -16.13837 -16.03647 -15.55683 -15.41626 -15.03306 -14.92375 -14.46255 -14.14473 -13.81196 -13.59290 -13.43099 -13.29990 -13.11734 -13.03403 -12.97665 -12.93818 -12.85469 -12.79754 -12.67216 -12.55617 -12.47155 -12.15713 -12.08462 -11.71954 -11.64417 -11.30099 -11.19038 -11.12901 -10.50087 -10.13071 -9.84089 -9.42303 -8.80799 -6.60505 -0.16159 0.52508 0.96344 1.35596 1.46441 1.51189 2.15543 2.33554 2.63147 2.92054 2.99705 3.45566 3.63256 3.85259 3.93973 3.97299 4.32351 4.38357 4.41636 4.49014 4.50256 4.58767 4.61446 4.70415 4.77591 4.83646 4.85751 4.92006 5.00282 5.04109 5.12600 5.12880 5.17800 5.20106 5.29654 5.41861 5.51883 5.53347 5.69945 5.80620 5.98837 6.08435 6.19382 6.36133 6.46794 6.68806 6.82295 8.17455 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.005874 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.366542 B = 4765.458413 C = 5675.623315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C 0.111 3.889 4 C -0.143 4.143 5 C 0.091 3.909 6 N -1.103 6.103 7 S 2.719 3.281 8 O -1.007 7.007 9 O -1.000 7.000 10 C -0.791 4.791 11 C -0.017 4.017 12 C -0.248 4.248 13 C -0.074 4.074 14 C -0.183 4.183 15 C 0.167 3.833 16 C -0.476 4.476 17 H 0.092 0.908 18 C 0.042 3.958 19 N -0.809 5.809 20 Si 0.969 3.031 21 H -0.268 1.268 22 H -0.259 1.259 23 H -0.244 1.244 24 O -0.384 6.384 25 C 0.019 3.981 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.419 0.581 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.294 0.706 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 -8.362 1.585 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C 0.070 3.930 4 C -0.200 4.200 5 C -0.036 4.036 6 N -0.863 5.863 7 S 2.816 3.184 8 O -0.997 6.997 9 O -0.991 6.991 10 C -0.885 4.885 11 C -0.036 4.036 12 C -0.268 4.268 13 C -0.093 4.093 14 C -0.203 4.203 15 C 0.163 3.837 16 C -0.505 4.505 17 H 0.110 0.890 18 C -0.176 4.176 19 N -0.433 5.433 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.183 1.183 23 H -0.167 1.167 24 O -0.303 6.303 25 C -0.077 4.077 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.255 0.745 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.523 -7.805 2.281 14.103 hybrid contribution 0.342 0.529 -1.297 1.442 sum -11.181 -7.276 0.984 13.377 Atomic orbital electron populations 1.21694 0.93886 1.02066 1.02394 1.22093 0.98089 0.94568 1.03844 1.21784 0.89938 0.93970 0.87282 1.21856 1.02551 1.00749 0.94847 1.22006 0.96863 0.82107 1.02592 1.55192 1.29003 1.14120 1.88006 1.00372 0.72779 0.72129 0.73157 1.93417 1.85711 1.71469 1.49122 1.93491 1.85697 1.31967 1.87920 1.30223 1.25608 1.18401 1.14264 1.20594 0.92426 0.92244 0.98385 1.20898 1.06335 1.05394 0.94192 1.21242 0.96341 0.94865 0.96852 1.21453 1.01506 0.98030 0.99324 1.17275 0.88967 0.88718 0.88781 1.20070 1.05233 1.05305 1.19853 0.89043 1.26722 0.97382 0.99723 0.93734 1.69819 1.18571 1.31682 1.23278 0.85378 0.79473 0.77919 0.78339 1.19333 1.18255 1.16726 1.87934 1.73882 1.54757 1.13754 1.22892 0.99417 0.99116 0.86293 0.93011 0.91608 0.91835 0.91037 0.89430 0.92680 0.90097 0.89849 0.91790 0.89221 0.74460 0.85904 0.85387 0.85925 0.87399 0.89463 0.92063 0.89320 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.41 71.98 0.68 -1.59 16 2 C -0.15 -2.70 4.61 30.59 0.14 -2.56 16 3 C 0.11 2.64 0.48 -10.80 -0.01 2.64 16 4 C -0.14 -3.11 8.27 71.98 0.60 -2.51 16 5 C 0.09 2.65 4.96 86.38 0.43 3.08 16 6 N -1.10 -38.77 4.49 -187.50 -0.84 -39.61 16 7 S 2.72 119.68 4.97 -56.49 -0.28 119.40 16 8 O -1.01 -44.90 16.40 -128.00 -2.10 -47.00 16 9 O -1.00 -51.29 16.60 -128.00 -2.12 -53.41 16 10 C -0.79 -37.79 5.94 22.73 0.14 -37.66 16 11 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 12 C -0.25 -10.27 10.05 22.46 0.23 -10.05 16 13 C -0.07 -3.22 10.02 22.22 0.22 -2.99 16 14 C -0.18 -9.06 8.65 22.73 0.20 -8.86 16 15 C 0.17 8.57 5.51 -21.29 -0.12 8.45 16 16 C -0.48 -24.28 7.55 23.46 0.18 -24.10 16 17 H 0.09 4.41 5.88 -2.91 -0.02 4.39 16 18 C 0.04 2.07 5.19 85.26 0.44 2.52 16 19 N -0.81 -40.89 11.14 21.83 0.24 -40.65 16 20 Si 0.97 37.31 29.58 68.60 2.03 39.34 16 21 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.24 -8.89 7.11 99.48 0.71 -8.18 16 24 O -0.38 -10.24 9.45 -148.98 -1.41 -11.65 16 25 C 0.02 0.47 10.21 113.37 1.16 1.62 16 26 H 0.05 0.91 7.68 -2.39 -0.02 0.90 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.94 6.43 -2.39 -0.02 0.93 16 29 H 0.07 1.28 6.54 -2.38 -0.02 1.26 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.33 6.95 -2.39 -0.02 1.31 16 32 H 0.08 1.50 6.43 -2.39 -0.02 1.48 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.93 6.28 -2.39 -0.02 1.91 16 35 H 0.09 2.48 7.70 -2.38 -0.02 2.46 16 36 H 0.42 14.10 7.41 -96.74 -0.72 13.38 16 37 H 0.12 4.94 7.32 -2.91 -0.02 4.92 16 38 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 40 H 0.11 5.46 6.50 -2.91 -0.02 5.45 16 41 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 42 H 0.06 1.22 6.42 -2.39 -0.02 1.20 16 43 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.04 1.03 6.31 -2.38 -0.02 1.01 16 Total: -1.00 -65.08 359.17 0.31 -64.76 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: 0.31 Total: 41.37 kcal Atomic # 6 Polarization: -77.05 SS G_CDS: 4.49 Total: -72.56 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -0.60 Total: -80.26 kcal Atomic # 8 Polarization: -106.43 SS G_CDS: -5.63 Total: -112.06 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 16 Polarization: 119.68 SS G_CDS: -0.28 Total: 119.40 kcal Total: -65.08 0.31 -64.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601430796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.046 kcal (2) G-P(sol) polarization free energy of solvation -65.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds