Wall clock time and date at job start Tue Mar 31 2020 15:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46804 * 2 1 4 4 C 1.52997 * 109.46908 * 180.21685 * 3 2 1 5 5 C 1.53001 * 109.47231 * 60.21499 * 3 2 1 6 6 N 1.46495 * 109.46951 * 179.77437 * 5 3 2 7 7 S 1.65607 * 119.99964 * 162.40412 * 6 5 3 8 8 O 1.42092 * 106.40332 * 178.62802 * 7 6 5 9 9 O 1.42101 * 106.39905 * 311.55064 * 7 6 5 10 10 C 1.76196 * 107.21392 * 65.08680 * 7 6 5 11 11 C 1.37648 * 120.12763 * 245.71921 * 10 7 6 12 12 C 1.38614 * 120.24632 * 179.97438 * 11 10 7 13 13 C 1.38654 * 120.50523 * 0.02747 * 12 11 10 14 14 C 1.37604 * 120.24774 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.13006 * 65.45062 * 10 7 6 16 16 C 1.41392 * 120.24279 * 359.97438 * 15 10 7 17 17 H 1.08002 * 119.99804 * 328.24860 * 16 15 10 18 18 C 1.39940 * 120.00512 * 148.25674 * 16 15 10 19 19 N 1.30826 * 119.99835 * 345.82488 * 18 16 15 20 20 Si 1.86795 * 120.00531 * 165.82812 * 18 16 15 21 21 H 1.48510 * 109.46994 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47475 * 119.99760 * 20 18 16 23 23 H 1.48501 * 109.47079 * 240.00228 * 20 18 16 24 24 O 1.42900 * 109.47230 * 300.21255 * 3 2 1 25 25 C 1.42897 * 114.00084 * 300.00914 * 24 3 2 26 26 H 1.09000 * 109.46543 * 179.73584 * 1 2 3 27 27 H 1.08994 * 109.47073 * 299.73574 * 1 2 3 28 28 H 1.09001 * 109.46829 * 59.74072 * 1 2 3 29 29 H 1.08997 * 109.47425 * 239.99840 * 2 1 3 30 30 H 1.08996 * 109.47244 * 119.99705 * 2 1 3 31 31 H 1.09004 * 109.46999 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47318 * 299.99865 * 4 3 2 33 33 H 1.09002 * 109.47606 * 59.99702 * 4 3 2 34 34 H 1.09000 * 109.47025 * 299.77970 * 5 3 2 35 35 H 1.09005 * 109.46870 * 59.77911 * 5 3 2 36 36 H 0.96996 * 120.00598 * 342.40610 * 6 5 3 37 37 H 1.08001 * 119.87610 * 0.02562 * 11 10 7 38 38 H 1.07999 * 119.74568 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.87468 * 179.97438 * 13 12 11 40 40 H 1.07991 * 120.12686 * 179.97438 * 14 13 12 41 41 H 0.96999 * 120.00081 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.46691 * 299.99007 * 25 24 3 43 43 H 1.08994 * 109.47476 * 59.99258 * 25 24 3 44 44 H 1.09004 * 109.46954 * 180.02562 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0055 5 6 1.5344 2.1623 1.2519 6 7 2.0271 3.5419 1.2546 7 16 1.3099 4.6754 2.2258 8 8 2.0268 5.8859 2.0266 9 8 -0.0903 4.5574 2.0138 10 6 1.6027 4.1925 3.8948 11 6 0.5512 3.8187 4.7006 12 6 0.7789 3.4378 6.0138 13 6 2.0652 3.4291 6.5312 14 6 3.1314 3.7999 5.7442 15 6 2.9130 4.1820 4.4075 16 6 4.0016 4.5580 3.5873 17 1 3.9698 4.3641 2.5253 18 6 5.1204 5.1811 4.1515 19 7 5.0567 5.6656 5.3651 20 14 6.7047 5.3213 3.1720 21 1 6.5179 4.6986 1.8368 22 1 7.0587 6.7538 3.0055 23 1 7.7973 4.6222 3.8952 24 8 1.5595 2.1177 -1.1643 25 6 1.9767 1.5228 -2.3947 26 1 -0.3632 -1.0277 -0.0047 27 1 -0.3633 0.5097 0.8923 28 1 -0.3633 0.5179 -0.8877 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9332 2.4703 -0.0059 32 1 3.9365 0.9277 0.8826 33 1 3.9302 0.9299 -0.8973 34 1 0.4444 2.1656 1.2538 35 1 1.8977 1.6450 2.1400 36 1 2.7733 3.7915 0.6875 37 1 -0.4549 3.8214 4.3079 38 1 -0.0522 3.1465 6.6389 39 1 2.2309 3.1309 7.5559 40 1 4.1324 3.7928 6.1493 41 1 5.8322 6.0972 5.7564 42 1 3.0655 1.5246 -2.4483 43 1 1.6122 0.4968 -2.4444 44 1 1.5714 2.0938 -3.2301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601430797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:10 Heat of formation + Delta-G solvation = -112.358812 kcal Electronic energy + Delta-G solvation = -27492.764872 eV Core-core repulsion = 23729.669103 eV Total energy + Delta-G solvation = -3763.095769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.41268 -37.57900 -36.13580 -34.88663 -34.73592 -33.84633 -32.88490 -30.22121 -29.78925 -29.57091 -27.32054 -25.55790 -25.15206 -23.43262 -21.64111 -21.13966 -19.82038 -18.57270 -17.67859 -17.02634 -16.70773 -15.96090 -15.47923 -15.39778 -15.36267 -14.71593 -14.39883 -14.25654 -13.71781 -13.30191 -13.28432 -13.18880 -12.99549 -12.77558 -12.72675 -12.22533 -11.97768 -11.90254 -11.65662 -11.54709 -11.27978 -11.25154 -11.14874 -11.10797 -11.00457 -10.93993 -10.87778 -10.70019 -10.49344 -10.16593 -9.86218 -9.49455 -9.43622 -9.38122 -8.69891 -8.02385 -7.58387 -7.02760 -4.73411 1.61196 2.34818 2.72353 2.97632 3.02916 3.10068 3.74962 3.78808 4.04608 4.42282 4.64934 4.78387 4.85556 4.90601 5.20719 5.27284 5.29820 5.34223 5.45295 5.58475 5.60546 5.67544 5.73641 5.83999 5.84829 5.89838 5.94610 6.05045 6.15744 6.19231 6.24103 6.32452 6.37918 6.46067 6.80673 6.93577 7.08981 7.27621 7.32188 7.49565 7.59581 7.71584 7.79963 7.90795 8.28808 8.52773 8.64883 9.93289 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.005605 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.771149 B = 4994.298897 C = 6052.352722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.147 4.147 3 C 0.109 3.891 4 C -0.180 4.180 5 C 0.139 3.861 6 N -1.115 6.115 7 S 2.702 3.298 8 O -0.964 6.964 9 O -0.997 6.997 10 C -0.774 4.774 11 C -0.003 4.003 12 C -0.249 4.249 13 C -0.076 4.076 14 C -0.157 4.157 15 C 0.190 3.810 16 C -0.451 4.451 17 H 0.088 0.912 18 C 0.083 3.917 19 N -0.776 5.776 20 Si 0.913 3.087 21 H -0.255 1.255 22 H -0.269 1.269 23 H -0.270 1.270 24 O -0.366 6.366 25 C 0.023 3.977 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.411 0.589 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.287 0.713 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 -10.631 -8.811 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.068 3.932 4 C -0.238 4.238 5 C 0.012 3.988 6 N -0.872 5.872 7 S 2.799 3.201 8 O -0.954 6.954 9 O -0.988 6.988 10 C -0.869 4.869 11 C -0.023 4.023 12 C -0.270 4.270 13 C -0.095 4.095 14 C -0.177 4.177 15 C 0.186 3.814 16 C -0.479 4.479 17 H 0.106 0.894 18 C -0.139 4.139 19 N -0.399 5.399 20 Si 0.736 3.264 21 H -0.178 1.178 22 H -0.194 1.194 23 H -0.195 1.195 24 O -0.285 6.285 25 C -0.073 4.073 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.246 0.754 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.176 -9.630 -8.845 13.128 hybrid contribution 1.567 -0.455 0.100 1.635 sum 0.391 -10.085 -8.745 13.354 Atomic orbital electron populations 1.21794 0.94901 1.01347 1.03142 1.22098 0.97402 0.96169 1.02895 1.21730 0.93379 0.91621 0.86463 1.22423 0.95263 1.03465 1.02648 1.21204 0.99913 0.82283 0.95414 1.55552 1.50013 1.21798 1.59878 1.01044 0.72267 0.72757 0.74022 1.93540 1.73469 1.42283 1.86140 1.93443 1.32032 1.86939 1.86363 1.29994 1.00250 1.33800 1.22810 1.20285 0.96184 0.92228 0.93610 1.20487 0.96111 1.14171 0.96207 1.20885 0.93493 0.97529 0.97557 1.21369 0.97958 1.03151 0.95212 1.16986 0.89078 0.83259 0.92095 1.19824 0.99776 1.32341 0.96005 0.89413 1.25905 1.00458 0.92541 0.94949 1.69798 1.31304 1.24282 1.14532 0.86168 0.79996 0.79352 0.80862 1.17849 1.19358 1.19532 1.88061 1.74130 1.53450 1.12879 1.22778 0.99251 0.98247 0.87045 0.92939 0.91783 0.92041 0.91449 0.90532 0.91129 0.90779 0.92305 0.89732 0.90425 0.75386 0.87375 0.88722 0.88837 0.86482 0.90232 0.93943 0.94013 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.41 37.16 0.35 -1.28 16 2 C -0.15 -1.52 4.60 -26.73 -0.12 -1.64 16 3 C 0.11 1.38 0.52 -90.62 -0.05 1.34 16 4 C -0.18 -2.12 8.08 37.16 0.30 -1.82 16 5 C 0.14 2.15 5.03 -4.04 -0.02 2.13 16 6 N -1.11 -20.21 4.87 -10.61 -0.05 -20.26 16 7 S 2.70 60.56 4.97 -107.50 -0.53 60.02 16 8 O -0.96 -24.63 16.59 -57.17 -0.95 -25.57 16 9 O -1.00 -23.34 16.40 -57.17 -0.94 -24.28 16 10 C -0.77 -18.50 5.94 -38.87 -0.23 -18.73 16 11 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 12 C -0.25 -5.41 10.05 -39.29 -0.39 -5.80 16 13 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16 14 C -0.16 -3.84 8.65 -38.87 -0.34 -4.18 16 15 C 0.19 4.81 5.50 -106.82 -0.59 4.22 16 16 C -0.45 -11.22 7.51 -37.75 -0.28 -11.50 16 17 H 0.09 2.04 5.95 -52.49 -0.31 1.73 16 18 C 0.08 1.99 5.17 -17.34 -0.09 1.90 16 19 N -0.78 -19.22 11.23 55.55 0.62 -18.60 16 20 Si 0.91 17.96 29.58 -169.99 -5.03 12.93 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 24 O -0.37 -4.99 9.53 -35.23 -0.34 -5.33 16 25 C 0.02 0.23 10.21 101.05 1.03 1.27 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.73 6.45 -51.93 -0.34 0.40 16 28 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 29 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.91 6.56 -51.93 -0.34 0.57 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 34 H 0.08 1.34 6.01 -51.93 -0.31 1.03 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.41 6.95 6.80 -34.47 -0.23 6.72 16 37 H 0.11 2.27 7.32 -52.49 -0.38 1.89 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 2.88 6.57 -52.49 -0.34 2.53 16 41 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 42 H 0.04 0.39 6.42 -51.93 -0.33 0.05 16 43 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -30.97 359.09 -9.11 -40.08 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.10 Total: 12.24 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: -1.21 Total: -36.65 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.57 Total: -38.86 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -2.22 Total: -55.18 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 60.56 SS G_CDS: -0.53 Total: 60.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.97 -9.11 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601430797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.276 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds