Wall clock time and date at job start Tue Mar 31 2020 14:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.53001 * 109.47257 * 120.00181 * 2 1 3 5 5 C 1.52998 * 109.47234 * 65.89967 * 4 2 1 6 6 H 1.09003 * 109.47244 * 302.89914 * 5 4 2 7 7 C 1.52998 * 109.47183 * 182.90522 * 5 4 2 8 8 O 1.42901 * 109.47030 * 304.99723 * 7 5 4 9 9 N 1.46499 * 109.47428 * 62.90387 * 5 4 2 10 10 S 1.65599 * 120.00010 * 217.81398 * 9 5 4 11 11 O 1.42102 * 106.40135 * 182.24087 * 10 9 5 12 12 O 1.42094 * 106.40322 * 49.31999 * 10 9 5 13 13 C 1.76199 * 107.21584 * 295.77708 * 10 9 5 14 14 C 1.37642 * 120.12802 * 114.36745 * 13 10 9 15 15 C 1.38610 * 120.24983 * 180.32378 * 14 13 10 16 16 C 1.38651 * 120.50248 * 359.66281 * 15 14 13 17 17 C 1.37600 * 120.24721 * 0.02562 * 16 15 14 18 18 C 1.40694 * 120.13258 * 294.05640 * 13 10 9 19 19 C 1.41392 * 120.24029 * 359.97438 * 18 13 10 20 20 H 1.08003 * 120.00454 * 31.20199 * 19 18 13 21 21 C 1.39948 * 120.00012 * 211.20617 * 19 18 13 22 22 N 1.30826 * 119.99829 * 24.88964 * 21 19 18 23 23 Si 1.86808 * 120.00135 * 204.89069 * 21 19 18 24 24 H 1.48503 * 109.47174 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.46881 * 299.99690 * 23 21 19 26 26 H 1.48496 * 109.46884 * 59.99974 * 23 21 19 27 27 H 1.09003 * 109.46849 * 301.03006 * 1 2 3 28 28 H 1.08997 * 109.47363 * 61.03258 * 1 2 3 29 29 H 1.09002 * 109.47109 * 181.03664 * 1 2 3 30 30 H 1.09000 * 109.47099 * 239.99879 * 2 1 3 31 31 H 1.08996 * 109.46758 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47017 * 299.99793 * 3 2 1 33 33 H 1.08998 * 109.47016 * 60.00451 * 3 2 1 34 34 H 1.08994 * 109.47180 * 305.89545 * 4 2 1 35 35 H 1.09007 * 109.47286 * 185.89893 * 4 2 1 36 36 H 1.08999 * 109.47334 * 64.99481 * 7 5 4 37 37 H 1.08998 * 109.47362 * 184.99559 * 7 5 4 38 38 H 0.96706 * 113.99879 * 179.97438 * 8 7 5 39 39 H 0.97000 * 119.99565 * 37.80811 * 9 5 4 40 40 H 1.08007 * 119.87364 * 0.02562 * 14 13 10 41 41 H 1.08002 * 119.74976 * 179.69066 * 15 14 13 42 42 H 1.08002 * 119.87937 * 180.02562 * 16 15 14 43 43 H 1.08006 * 120.12783 * 180.02562 * 17 16 15 44 44 H 0.96997 * 119.99953 * 4.63722 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6547 -2.2002 1.1773 6 1 0.5735 -2.2893 1.0711 7 6 2.1010 -2.9064 2.4590 8 8 3.4994 -2.6911 2.6593 9 7 2.3115 -2.8205 0.0240 10 16 1.5093 -3.9585 -0.8726 11 8 2.4202 -4.3981 -1.8707 12 8 0.2343 -3.4074 -1.1724 13 6 1.2187 -5.3415 0.1797 14 6 -0.0676 -5.6879 0.5261 15 6 -0.2987 -6.7714 1.3591 16 6 0.7598 -7.5223 1.8472 17 6 2.0536 -7.1981 1.5090 18 6 2.3002 -6.1001 0.6640 19 6 3.6254 -5.7580 0.3092 20 1 3.8861 -4.7261 0.1256 21 6 4.5994 -6.7565 0.1957 22 7 4.2458 -7.9881 -0.0686 23 14 6.4042 -6.3309 0.4216 24 1 7.2266 -7.5559 0.2533 25 1 6.8053 -5.3218 -0.5913 26 1 6.6154 -5.7768 1.7830 27 1 -0.3633 0.5298 0.8806 28 1 -0.3634 0.4977 -0.8991 29 1 -0.3633 -1.0275 0.0186 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5931 -0.2721 2.1360 35 1 3.1250 -0.6307 1.3036 36 1 1.5465 -2.5049 3.3071 37 1 1.9069 -3.9754 2.3714 38 1 3.8519 -3.1111 3.4559 39 1 3.2162 -2.5645 -0.2145 40 1 -0.8997 -5.1104 0.1512 41 1 -1.3110 -7.0330 1.6297 42 1 0.5681 -8.3647 2.4953 43 1 2.8767 -7.7846 1.8899 44 1 3.3167 -8.1971 -0.2523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601463144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:58 Heat of formation + Delta-G solvation = -136.445805 kcal Electronic energy + Delta-G solvation = -27893.104405 eV Core-core repulsion = 24128.964146 eV Total energy + Delta-G solvation = -3764.140259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.24491 -37.80060 -36.23040 -35.77304 -34.85131 -34.08345 -33.56667 -30.21147 -29.56072 -29.01319 -27.04037 -25.87177 -25.32512 -21.82512 -21.36394 -21.10543 -19.77973 -18.84024 -18.26531 -17.28982 -16.50565 -16.27352 -15.61238 -14.98940 -14.79927 -14.65864 -14.41365 -14.13169 -13.87459 -13.63380 -13.47675 -13.31103 -12.66619 -12.42351 -12.38933 -12.22479 -12.05437 -11.83843 -11.59614 -11.40617 -11.24183 -11.15510 -11.14191 -11.02413 -10.89733 -10.55498 -10.53647 -10.48446 -10.46195 -10.38274 -9.85196 -9.59320 -9.48885 -9.20678 -8.77393 -8.22603 -7.82571 -7.47773 -4.81738 1.51604 2.20310 2.63452 3.09337 3.18089 3.28683 3.88618 3.89851 4.33867 4.58088 4.68976 4.82653 5.04144 5.06197 5.11058 5.40824 5.46892 5.51305 5.62133 5.67489 5.70413 5.79875 5.87897 5.89849 5.95606 6.02791 6.06059 6.13302 6.19572 6.27413 6.33882 6.43536 6.54052 6.58802 6.70434 6.87797 7.12118 7.26992 7.35655 7.52410 7.60742 7.66821 7.82329 7.95381 7.97575 8.34994 8.57342 9.80026 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.005934 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.290437 B = 4717.088064 C = 5546.388884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.160 3.840 6 H 0.098 0.902 7 C 0.056 3.944 8 O -0.561 6.561 9 N -1.107 6.107 10 S 2.698 3.302 11 O -0.966 6.966 12 O -0.998 6.998 13 C -0.782 4.782 14 C 0.011 3.989 15 C -0.265 4.265 16 C -0.057 4.057 17 C -0.209 4.209 18 C 0.166 3.834 19 C -0.492 4.492 20 H 0.091 0.909 21 C 0.044 3.956 22 N -0.772 5.772 23 Si 1.064 2.936 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.271 1.271 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.374 0.626 39 H 0.414 0.586 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 10.726 5.710 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.149 4.149 5 C 0.052 3.948 6 H 0.116 0.884 7 C -0.024 4.024 8 O -0.366 6.366 9 N -0.863 5.863 10 S 2.795 3.205 11 O -0.956 6.956 12 O -0.988 6.988 13 C -0.877 4.877 14 C -0.008 4.008 15 C -0.286 4.286 16 C -0.075 4.075 17 C -0.229 4.229 18 C 0.161 3.839 19 C -0.519 4.519 20 H 0.109 0.891 21 C -0.181 4.181 22 N -0.393 5.393 23 Si 0.886 3.114 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.220 0.780 39 H 0.248 0.752 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.641 10.428 4.300 11.298 hybrid contribution -1.292 -0.234 1.165 1.756 sum -1.934 10.194 5.465 11.727 Atomic orbital electron populations 1.21938 0.95283 1.02836 1.01032 1.21139 0.96055 0.95680 0.99047 1.21829 1.00807 0.96279 1.01283 1.21789 1.02307 0.93268 0.97555 1.20798 0.96768 0.92841 0.84391 0.88423 1.22787 0.82399 1.00653 0.96522 1.86426 1.23253 1.77851 1.49037 1.55603 1.28745 1.58075 1.43912 1.01129 0.72433 0.73197 0.73698 1.93547 1.64255 1.81347 1.56455 1.93446 1.42513 1.79019 1.83823 1.29890 0.99465 1.27059 1.31245 1.20334 0.94223 0.94219 0.92067 1.20428 0.97159 1.01977 1.09010 1.20823 0.93452 0.96591 0.96682 1.21290 0.95554 1.02317 1.03702 1.16955 0.91026 0.89211 0.86703 1.20896 0.93750 0.98259 1.38969 0.89094 1.27115 1.07913 0.91937 0.91147 1.70457 1.24208 1.20543 1.24126 0.83650 0.72190 0.77178 0.78352 1.19692 1.19409 1.19584 0.93184 0.93031 0.91296 0.90840 0.92840 0.93021 0.93002 0.91393 0.90406 0.93958 0.91764 0.78005 0.75221 0.87359 0.88624 0.88741 0.87520 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.99 37.16 0.33 -1.60 16 2 C -0.10 -1.26 2.85 -90.62 -0.26 -1.52 16 3 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 4 C -0.11 -1.39 4.06 -26.73 -0.11 -1.50 16 5 C 0.16 2.40 2.56 -67.93 -0.17 2.22 16 6 H 0.10 1.48 5.82 -51.93 -0.30 1.17 16 7 C 0.06 0.82 6.88 37.16 0.26 1.08 16 8 O -0.56 -8.06 12.78 -35.23 -0.45 -8.51 16 9 N -1.11 -19.31 3.83 -4.89 -0.02 -19.33 16 10 S 2.70 58.10 4.94 -107.50 -0.53 57.57 16 11 O -0.97 -24.25 16.54 -57.17 -0.95 -25.20 16 12 O -1.00 -21.89 16.35 -57.17 -0.93 -22.82 16 13 C -0.78 -17.91 5.04 -38.87 -0.20 -18.11 16 14 C 0.01 0.25 9.53 -39.66 -0.38 -0.13 16 15 C -0.27 -5.52 10.05 -39.29 -0.39 -5.91 16 16 C -0.06 -1.20 10.02 -39.66 -0.40 -1.60 16 17 C -0.21 -4.87 8.02 -38.87 -0.31 -5.18 16 18 C 0.17 4.02 4.67 -106.83 -0.50 3.52 16 19 C -0.49 -12.03 7.44 -37.74 -0.28 -12.31 16 20 H 0.09 2.14 6.04 -52.48 -0.32 1.82 16 21 C 0.04 1.06 4.91 -17.34 -0.09 0.97 16 22 N -0.77 -19.63 12.57 55.55 0.70 -18.94 16 23 Si 1.06 20.72 30.00 -169.99 -5.10 15.62 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 26 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.99 6.49 -51.93 -0.34 0.65 16 30 H 0.07 1.03 7.52 -51.93 -0.39 0.64 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.01 7.66 -51.92 -0.40 0.61 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 1.12 6.70 -51.93 -0.35 0.77 16 38 H 0.37 4.12 9.12 45.56 0.42 4.53 16 39 H 0.41 6.85 8.68 -34.47 -0.30 6.56 16 40 H 0.11 2.18 7.32 -52.48 -0.38 1.79 16 41 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.11 2.52 6.95 -52.48 -0.36 2.16 16 44 H 0.30 7.93 6.87 -40.82 -0.28 7.65 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -29.88 364.83 -9.54 -39.42 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -5.61 Total: 17.92 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: -2.15 Total: -41.24 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.68 Total: -38.26 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -2.33 Total: -56.53 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.10 Total: 15.62 kcal Atomic # 16 Polarization: 58.10 SS G_CDS: -0.53 Total: 57.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.88 -9.54 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601463144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.028 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds