Wall clock time and date at job start Tue Mar 31 2020 14:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.53001 * 109.47257 * 120.00181 * 2 1 3 5 5 C 1.52998 * 109.47234 * 65.89967 * 4 2 1 6 6 H 1.09003 * 109.47244 * 302.89914 * 5 4 2 7 7 C 1.52998 * 109.47183 * 182.90522 * 5 4 2 8 8 O 1.42901 * 109.47030 * 304.99723 * 7 5 4 9 9 N 1.46499 * 109.47428 * 62.90387 * 5 4 2 10 10 S 1.65599 * 120.00010 * 217.81398 * 9 5 4 11 11 O 1.42102 * 106.40135 * 182.24087 * 10 9 5 12 12 O 1.42094 * 106.40322 * 49.31999 * 10 9 5 13 13 C 1.76199 * 107.21584 * 295.77708 * 10 9 5 14 14 C 1.37642 * 120.12802 * 114.36745 * 13 10 9 15 15 C 1.38610 * 120.24983 * 180.32378 * 14 13 10 16 16 C 1.38651 * 120.50248 * 359.66281 * 15 14 13 17 17 C 1.37600 * 120.24721 * 0.02562 * 16 15 14 18 18 C 1.40694 * 120.13258 * 294.05640 * 13 10 9 19 19 C 1.41392 * 120.24029 * 359.97438 * 18 13 10 20 20 H 1.08003 * 120.00454 * 31.20199 * 19 18 13 21 21 C 1.39948 * 120.00012 * 211.20617 * 19 18 13 22 22 N 1.30826 * 119.99829 * 24.88964 * 21 19 18 23 23 Si 1.86808 * 120.00135 * 204.89069 * 21 19 18 24 24 H 1.48503 * 109.47174 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.46881 * 299.99690 * 23 21 19 26 26 H 1.48496 * 109.46884 * 59.99974 * 23 21 19 27 27 H 1.09003 * 109.46849 * 301.03006 * 1 2 3 28 28 H 1.08997 * 109.47363 * 61.03258 * 1 2 3 29 29 H 1.09002 * 109.47109 * 181.03664 * 1 2 3 30 30 H 1.09000 * 109.47099 * 239.99879 * 2 1 3 31 31 H 1.08996 * 109.46758 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47017 * 299.99793 * 3 2 1 33 33 H 1.08998 * 109.47016 * 60.00451 * 3 2 1 34 34 H 1.08994 * 109.47180 * 305.89545 * 4 2 1 35 35 H 1.09007 * 109.47286 * 185.89893 * 4 2 1 36 36 H 1.08999 * 109.47334 * 64.99481 * 7 5 4 37 37 H 1.08998 * 109.47362 * 184.99559 * 7 5 4 38 38 H 0.96706 * 113.99879 * 179.97438 * 8 7 5 39 39 H 0.97000 * 119.99565 * 37.80811 * 9 5 4 40 40 H 1.08007 * 119.87364 * 0.02562 * 14 13 10 41 41 H 1.08002 * 119.74976 * 179.69066 * 15 14 13 42 42 H 1.08002 * 119.87937 * 180.02562 * 16 15 14 43 43 H 1.08006 * 120.12783 * 180.02562 * 17 16 15 44 44 H 0.96997 * 119.99953 * 4.63722 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6547 -2.2002 1.1773 6 1 0.5735 -2.2893 1.0711 7 6 2.1010 -2.9064 2.4590 8 8 3.4994 -2.6911 2.6593 9 7 2.3115 -2.8205 0.0240 10 16 1.5093 -3.9585 -0.8726 11 8 2.4202 -4.3981 -1.8707 12 8 0.2343 -3.4074 -1.1724 13 6 1.2187 -5.3415 0.1797 14 6 -0.0676 -5.6879 0.5261 15 6 -0.2987 -6.7714 1.3591 16 6 0.7598 -7.5223 1.8472 17 6 2.0536 -7.1981 1.5090 18 6 2.3002 -6.1001 0.6640 19 6 3.6254 -5.7580 0.3092 20 1 3.8861 -4.7261 0.1256 21 6 4.5994 -6.7565 0.1957 22 7 4.2458 -7.9881 -0.0686 23 14 6.4042 -6.3309 0.4216 24 1 7.2266 -7.5559 0.2533 25 1 6.8053 -5.3218 -0.5913 26 1 6.6154 -5.7768 1.7830 27 1 -0.3633 0.5298 0.8806 28 1 -0.3634 0.4977 -0.8991 29 1 -0.3633 -1.0275 0.0186 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5931 -0.2721 2.1360 35 1 3.1250 -0.6307 1.3036 36 1 1.5465 -2.5049 3.3071 37 1 1.9069 -3.9754 2.3714 38 1 3.8519 -3.1111 3.4559 39 1 3.2162 -2.5645 -0.2145 40 1 -0.8997 -5.1104 0.1512 41 1 -1.3110 -7.0330 1.6297 42 1 0.5681 -8.3647 2.4953 43 1 2.8767 -7.7846 1.8899 44 1 3.3167 -8.1971 -0.2523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601463144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:57 Heat of formation + Delta-G solvation = -157.611189 kcal Electronic energy + Delta-G solvation = -27894.022205 eV Core-core repulsion = 24128.964146 eV Total energy + Delta-G solvation = -3765.058059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.66851 -39.29038 -38.02385 -36.85057 -36.67385 -35.85131 -34.80446 -31.96716 -31.31237 -30.26623 -27.95191 -27.14514 -26.90266 -23.56261 -23.04264 -22.37276 -20.80661 -20.45323 -20.02060 -18.76291 -17.94031 -17.87005 -17.12109 -16.63553 -16.25685 -15.88849 -15.70982 -15.54200 -15.43132 -15.07421 -15.01421 -14.51479 -14.35330 -13.99338 -13.67817 -13.40154 -13.31507 -13.04147 -13.01271 -12.93027 -12.90993 -12.84625 -12.74793 -12.42071 -12.31615 -12.20894 -11.99613 -11.63646 -11.58029 -11.45049 -11.42006 -11.14985 -10.96168 -10.73618 -10.20825 -9.96121 -9.60980 -9.32437 -6.66379 -0.18188 0.43066 0.87643 1.50079 1.62707 1.77766 2.29267 2.31252 2.59150 2.96290 3.33210 3.49874 3.73878 3.79691 4.05557 4.09114 4.22806 4.32066 4.34518 4.38109 4.50288 4.56955 4.63406 4.74905 4.83439 4.85419 4.90486 4.95784 5.06877 5.08935 5.14180 5.18111 5.31647 5.33186 5.43732 5.49534 5.57701 5.59477 5.62780 5.70828 5.85308 6.01603 6.18261 6.25109 6.56469 6.78259 6.98748 7.92011 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.005934 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.290437 B = 4717.088064 C = 5546.388884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.140 4.140 4 C -0.100 4.100 5 C 0.152 3.848 6 H 0.096 0.904 7 C 0.060 3.940 8 O -0.571 6.571 9 N -1.096 6.096 10 S 2.714 3.286 11 O -1.007 7.007 12 O -1.004 7.004 13 C -0.791 4.791 14 C -0.003 4.003 15 C -0.258 4.258 16 C -0.054 4.054 17 C -0.230 4.230 18 C 0.154 3.846 19 C -0.521 4.521 20 H 0.091 0.909 21 C 0.010 3.990 22 N -0.800 5.800 23 Si 1.104 2.896 24 H -0.272 1.272 25 H -0.263 1.263 26 H -0.247 1.247 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.388 0.612 39 H 0.418 0.582 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 12.392 7.405 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.123 4.123 3 C -0.197 4.197 4 C -0.139 4.139 5 C 0.045 3.955 6 H 0.114 0.886 7 C -0.020 4.020 8 O -0.377 6.377 9 N -0.855 5.855 10 S 2.810 3.190 11 O -0.997 6.997 12 O -0.994 6.994 13 C -0.885 4.885 14 C -0.022 4.022 15 C -0.278 4.278 16 C -0.072 4.072 17 C -0.250 4.250 18 C 0.150 3.850 19 C -0.548 4.548 20 H 0.109 0.891 21 C -0.209 4.209 22 N -0.421 5.421 23 Si 0.921 3.079 24 H -0.197 1.197 25 H -0.188 1.188 26 H -0.171 1.171 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.236 0.764 39 H 0.253 0.747 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.113 0.887 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.191 12.087 6.017 13.554 hybrid contribution -1.329 -0.699 0.684 1.650 sum -2.520 11.388 6.701 13.452 Atomic orbital electron populations 1.21940 0.95287 1.01700 1.02195 1.21163 0.96094 0.96948 0.98113 1.21783 1.00974 0.94744 1.02231 1.21739 1.02354 0.91288 0.98546 1.21093 0.96568 0.94428 0.83424 0.88585 1.22688 0.83076 0.98825 0.97361 1.86387 1.23095 1.78000 1.50254 1.55245 1.28840 1.56857 1.44540 1.00497 0.72006 0.73172 0.73299 1.93488 1.65321 1.82352 1.58558 1.93429 1.42931 1.78977 1.84090 1.30131 0.99915 1.27668 1.30798 1.20652 0.94182 0.94932 0.92467 1.20854 0.98678 1.00753 1.07479 1.21185 0.92625 0.97136 0.96274 1.21322 0.96387 1.02710 1.04565 1.17180 0.91435 0.89668 0.86755 1.21017 0.94446 0.98431 1.40880 0.89064 1.28376 1.11355 0.91443 0.89748 1.70575 1.22913 1.21502 1.27098 0.83197 0.67961 0.77138 0.79633 1.19659 1.18801 1.17089 0.91040 0.92897 0.93539 0.92992 0.92573 0.92644 0.91515 0.89019 0.90531 0.90927 0.94888 0.76350 0.74653 0.85863 0.85269 0.85711 0.88669 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.99 71.98 0.65 -2.95 16 2 C -0.10 -2.45 2.85 -10.79 -0.03 -2.48 16 3 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 4 C -0.10 -2.30 4.06 30.59 0.12 -2.17 16 5 C 0.15 4.37 2.56 44.99 0.12 4.48 16 6 H 0.10 2.80 5.82 -2.39 -0.01 2.79 16 7 C 0.06 1.68 6.88 71.98 0.50 2.17 16 8 O -0.57 -15.44 12.78 -148.98 -1.90 -17.35 16 9 N -1.10 -38.18 3.83 -169.39 -0.65 -38.83 16 10 S 2.71 118.50 4.94 -56.49 -0.28 118.22 16 11 O -1.01 -52.09 16.54 -128.00 -2.12 -54.21 16 12 O -1.00 -44.16 16.35 -128.00 -2.09 -46.25 16 13 C -0.79 -36.51 5.04 22.73 0.11 -36.39 16 14 C 0.00 -0.11 9.53 22.22 0.21 0.10 16 15 C -0.26 -10.15 10.05 22.46 0.23 -9.93 16 16 C -0.05 -2.20 10.02 22.22 0.22 -1.98 16 17 C -0.23 -10.85 8.02 22.73 0.18 -10.66 16 18 C 0.15 7.60 4.67 -21.29 -0.10 7.50 16 19 C -0.52 -26.10 7.44 23.46 0.17 -25.92 16 20 H 0.09 4.41 6.04 -2.91 -0.02 4.39 16 21 C 0.01 0.47 4.91 85.26 0.42 0.89 16 22 N -0.80 -42.04 12.57 21.83 0.27 -41.77 16 23 Si 1.10 41.90 30.00 68.60 2.06 43.96 16 24 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 25 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 26 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.29 6.49 -2.39 -0.02 1.27 16 30 H 0.05 1.43 7.52 -2.39 -0.02 1.41 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.81 7.66 -2.38 -0.02 1.79 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 37 H 0.03 1.13 6.70 -2.39 -0.02 1.12 16 38 H 0.39 7.90 9.12 -74.05 -0.68 7.22 16 39 H 0.42 13.94 8.68 -96.74 -0.84 13.10 16 40 H 0.12 4.79 7.32 -2.91 -0.02 4.76 16 41 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 42 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.10 4.64 6.95 -2.91 -0.02 4.62 16 44 H 0.28 15.65 6.87 -92.71 -0.64 15.02 16 Total: -1.00 -65.31 364.83 -1.60 -66.90 By element: Atomic # 1 Polarization: 48.93 SS G_CDS: -0.35 Total: 48.57 kcal Atomic # 6 Polarization: -82.72 SS G_CDS: 3.46 Total: -79.26 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -0.37 Total: -80.60 kcal Atomic # 8 Polarization: -111.69 SS G_CDS: -6.11 Total: -117.80 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.06 Total: 43.96 kcal Atomic # 16 Polarization: 118.50 SS G_CDS: -0.28 Total: 118.22 kcal Total: -65.31 -1.60 -66.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601463144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.707 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds