Wall clock time and date at job start Tue Mar 31 2020 15:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47071 * 2 1 4 4 C 1.52995 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47461 * 304.99560 * 4 3 2 6 6 C 1.53009 * 109.46824 * 185.00212 * 4 3 2 7 7 C 1.53002 * 109.46970 * 173.76364 * 6 4 3 8 8 O 1.42898 * 109.46770 * 185.22613 * 7 6 4 9 9 N 1.46493 * 109.47456 * 65.00259 * 4 3 2 10 10 S 1.65601 * 120.00067 * 234.04195 * 9 4 3 11 11 O 1.42100 * 106.40299 * 309.40948 * 10 9 4 12 12 O 1.42101 * 106.40406 * 176.48494 * 10 9 4 13 13 C 1.76208 * 107.21678 * 62.94766 * 10 9 4 14 14 C 1.38655 * 119.87711 * 269.72940 * 13 10 9 15 15 C 1.38609 * 120.50108 * 179.72087 * 14 13 10 16 16 C 1.37640 * 120.24886 * 0.55140 * 15 14 13 17 17 C 1.40694 * 119.74489 * 359.72425 * 16 15 14 18 18 C 1.41394 * 120.24579 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00263 * 148.15420 * 18 17 16 20 20 C 1.39944 * 120.00080 * 328.14595 * 18 17 16 21 21 N 1.30831 * 119.99900 * 348.03119 * 20 18 17 22 22 Si 1.86793 * 120.00260 * 168.02745 * 20 18 17 23 23 H 1.48504 * 109.47102 * 60.00467 * 22 20 18 24 24 H 1.48501 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47303 * 300.00552 * 22 20 18 26 26 C 1.37600 * 119.87431 * 90.00075 * 13 10 9 27 27 H 1.08997 * 109.47012 * 299.99953 * 1 2 3 28 28 H 1.08995 * 109.47039 * 59.99641 * 1 2 3 29 29 H 1.09001 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47012 * 240.00047 * 2 1 3 31 31 H 1.09000 * 109.47431 * 120.00109 * 2 1 3 32 32 H 1.09005 * 109.46706 * 59.99685 * 3 2 1 33 33 H 1.09000 * 109.47081 * 300.00323 * 3 2 1 34 34 H 1.08998 * 109.46578 * 293.75941 * 6 4 3 35 35 H 1.08999 * 109.47118 * 53.76135 * 6 4 3 36 36 H 1.09006 * 109.46831 * 305.22357 * 7 6 4 37 37 H 1.08994 * 109.47274 * 65.22559 * 7 6 4 38 38 H 0.96703 * 113.99903 * 180.02562 * 8 7 6 39 39 H 0.97002 * 120.00058 * 54.03744 * 9 4 3 40 40 H 1.08000 * 119.74856 * 359.97438 * 14 13 10 41 41 H 1.08004 * 119.87617 * 180.25009 * 15 14 13 42 42 H 1.08001 * 120.13050 * 179.74571 * 16 15 14 43 43 H 0.97001 * 119.99956 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.12674 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8531 0.8409 6 6 4.0800 2.8796 0.1251 7 6 5.6021 2.8688 0.2809 8 8 6.0658 4.1991 0.5200 9 7 4.0578 0.8591 -1.2527 10 16 5.1278 -0.4043 -1.2158 11 8 6.1809 -0.0130 -0.3457 12 8 5.3390 -0.7909 -2.5669 13 6 4.3121 -1.7560 -0.4333 14 6 4.4019 -1.9149 0.9412 15 6 3.7607 -2.9701 1.5708 16 6 3.0358 -3.8796 0.8347 17 6 2.9424 -3.7316 -0.5613 18 6 2.2000 -4.6594 -1.3278 19 1 1.6942 -4.3360 -2.2255 20 6 2.1209 -5.9967 -0.9232 21 7 2.9117 -6.4431 0.0186 22 14 0.8862 -7.1445 -1.7278 23 1 1.1626 -7.2262 -3.1846 24 1 1.0015 -8.4967 -1.1250 25 1 -0.4875 -6.6228 -1.5132 26 6 3.5929 -2.6531 -1.1892 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.8103 3.4404 -0.7698 35 1 3.6287 3.3502 0.9986 36 1 5.8767 2.2316 1.1216 37 1 6.0579 2.4835 -0.6312 38 1 7.0243 4.2680 0.6285 39 1 3.7541 1.2127 -2.1033 40 1 4.9726 -1.2087 1.5261 41 1 3.8341 -3.0820 2.6426 42 1 2.5403 -4.7034 1.3268 43 1 2.8566 -7.3700 0.2993 44 1 3.5275 -2.5297 -2.2601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601483998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:09 Heat of formation + Delta-G solvation = -134.368536 kcal Electronic energy + Delta-G solvation = -27051.173319 eV Core-core repulsion = 23287.123137 eV Total energy + Delta-G solvation = -3764.050182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.19905 -37.67043 -36.64459 -36.31823 -35.34458 -33.80994 -33.24231 -30.75314 -30.09321 -29.86062 -27.75556 -25.49404 -23.63217 -21.95850 -21.26894 -20.92634 -20.81719 -19.26868 -18.04817 -17.31966 -17.02855 -16.18309 -15.93568 -15.23150 -15.02699 -14.90237 -14.70506 -14.47676 -13.94483 -13.57057 -13.41737 -13.34591 -13.19959 -12.65897 -12.59697 -12.00019 -11.91156 -11.70948 -11.60509 -11.44410 -11.42965 -11.37387 -11.34163 -11.25923 -11.10349 -10.90247 -10.73670 -10.68529 -10.55551 -10.38258 -9.91110 -9.80149 -9.72991 -9.36645 -9.19274 -8.06604 -7.65472 -6.88140 -4.56384 0.97501 2.14617 2.61352 3.00125 3.02562 3.05175 3.50623 3.84590 4.09573 4.19951 4.45327 4.85842 4.87215 5.02936 5.09186 5.23994 5.31844 5.37077 5.41977 5.54248 5.62745 5.75219 5.79784 5.87769 5.99156 5.99590 6.06965 6.08106 6.09703 6.26120 6.40487 6.53700 6.61124 6.69144 6.70509 6.79498 7.03425 7.16534 7.20768 7.32828 7.61098 7.65695 7.79472 7.90792 8.37826 8.66241 8.70922 10.09307 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017837 B = 0.003999 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.410178 B = 7000.662374 C = 7563.560833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.124 4.124 4 C 0.159 3.841 5 H 0.093 0.907 6 C -0.128 4.128 7 C 0.073 3.927 8 O -0.582 6.582 9 N -1.116 6.116 10 S 2.682 3.318 11 O -0.975 6.975 12 O -0.974 6.974 13 C -0.631 4.631 14 C -0.140 4.140 15 C -0.123 4.123 16 C -0.105 4.105 17 C 0.097 3.903 18 C -0.467 4.467 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.804 5.804 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.115 4.115 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.378 0.622 39 H 0.414 0.586 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.283 0.717 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 12.661 1.885 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.163 4.163 4 C 0.051 3.949 5 H 0.111 0.889 6 C -0.167 4.167 7 C -0.005 4.005 8 O -0.387 6.387 9 N -0.873 5.873 10 S 2.778 3.222 11 O -0.965 6.965 12 O -0.964 6.964 13 C -0.723 4.723 14 C -0.161 4.161 15 C -0.142 4.142 16 C -0.125 4.125 17 C 0.094 3.906 18 C -0.497 4.497 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.430 5.430 22 Si 0.736 3.264 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.136 4.136 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.225 0.775 39 H 0.247 0.753 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.436 12.534 1.791 12.742 hybrid contribution -0.565 -1.195 -0.295 1.354 sum -2.001 11.339 1.497 11.611 Atomic orbital electron populations 1.21722 0.96207 1.01847 1.00758 1.21604 0.95567 0.95623 1.03916 1.21955 0.93607 0.98289 1.02436 1.20736 0.94707 0.93533 0.85902 0.88857 1.21908 0.94726 0.96729 1.03339 1.22272 0.94695 0.82920 1.00564 1.86389 1.27606 1.29330 1.95408 1.55721 1.66446 1.51532 1.13600 1.01860 0.73555 0.73311 0.73439 1.93511 1.52436 1.82558 1.67946 1.93545 1.84791 1.82695 1.35364 1.29676 1.18971 1.18870 1.04791 1.20071 1.03671 1.00524 0.91829 1.20799 0.99426 0.95899 0.98079 1.21568 0.99115 0.97763 0.94071 1.17631 0.90055 0.90968 0.91939 1.19517 1.28105 0.92780 1.09315 0.90148 1.25869 0.94877 0.99140 0.94334 1.69739 1.31177 1.17246 1.24802 0.86295 0.81177 0.78625 0.80255 1.18897 1.20309 1.18824 1.20794 0.98049 0.97325 0.97449 0.93381 0.93324 0.92426 0.90958 0.91152 0.91038 0.91503 0.90881 0.90207 0.92616 0.93291 0.77513 0.75283 0.87703 0.88441 0.86275 0.90624 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.13 -1.75 5.47 -26.73 -0.15 -1.90 16 3 C -0.12 -1.34 4.89 -26.73 -0.13 -1.47 16 4 C 0.16 1.88 2.24 -67.93 -0.15 1.73 16 5 H 0.09 1.18 7.42 -51.93 -0.39 0.80 16 6 C -0.13 -1.41 5.25 -26.73 -0.14 -1.55 16 7 C 0.07 0.91 6.03 37.16 0.22 1.14 16 8 O -0.58 -6.89 13.66 -35.23 -0.48 -7.37 16 9 N -1.12 -14.67 4.44 -4.89 -0.02 -14.69 16 10 S 2.68 47.41 5.57 -107.50 -0.60 46.81 16 11 O -0.97 -18.24 15.44 -57.17 -0.88 -19.12 16 12 O -0.97 -20.07 17.27 -57.17 -0.99 -21.05 16 13 C -0.63 -12.76 5.05 -39.66 -0.20 -12.96 16 14 C -0.14 -2.78 9.01 -39.29 -0.35 -3.14 16 15 C -0.12 -2.57 10.02 -39.66 -0.40 -2.96 16 16 C -0.11 -2.48 8.64 -38.87 -0.34 -2.82 16 17 C 0.10 2.39 5.50 -106.83 -0.59 1.80 16 18 C -0.47 -11.65 9.04 -37.74 -0.34 -11.99 16 19 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 20 C 0.07 1.79 5.21 -17.34 -0.09 1.70 16 21 N -0.80 -19.93 11.13 55.55 0.62 -19.31 16 22 Si 0.91 18.01 29.58 -169.99 -5.03 12.99 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 24 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 C -0.11 -2.60 8.68 -38.87 -0.34 -2.94 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.10 6.64 -51.93 -0.34 0.76 16 31 H 0.07 1.05 8.03 -51.93 -0.42 0.64 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.05 0.65 7.29 -51.93 -0.38 0.27 16 38 H 0.38 2.93 9.12 45.56 0.42 3.35 16 39 H 0.41 4.53 8.96 -34.47 -0.31 4.23 16 40 H 0.10 1.87 7.59 -52.49 -0.40 1.48 16 41 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.12 2.90 6.51 -52.49 -0.34 2.56 16 43 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 44 H 0.11 2.45 7.60 -52.49 -0.40 2.06 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -29.98 371.84 -10.31 -40.29 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.91 Total: 12.68 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: -2.62 Total: -36.83 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.60 Total: -34.00 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -2.35 Total: -47.55 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 47.41 SS G_CDS: -0.60 Total: 46.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.98 -10.31 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601483998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.077 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds