Wall clock time and date at job start Tue Mar 31 2020 15:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47071 * 2 1 4 4 C 1.52995 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47461 * 304.99560 * 4 3 2 6 6 C 1.53009 * 109.46824 * 185.00212 * 4 3 2 7 7 C 1.53002 * 109.46970 * 173.76364 * 6 4 3 8 8 O 1.42898 * 109.46770 * 185.22613 * 7 6 4 9 9 N 1.46493 * 109.47456 * 65.00259 * 4 3 2 10 10 S 1.65601 * 120.00067 * 234.04195 * 9 4 3 11 11 O 1.42100 * 106.40299 * 309.40948 * 10 9 4 12 12 O 1.42101 * 106.40406 * 176.48494 * 10 9 4 13 13 C 1.76208 * 107.21678 * 62.94766 * 10 9 4 14 14 C 1.38655 * 119.87711 * 269.72940 * 13 10 9 15 15 C 1.38609 * 120.50108 * 179.72087 * 14 13 10 16 16 C 1.37640 * 120.24886 * 0.55140 * 15 14 13 17 17 C 1.40694 * 119.74489 * 359.72425 * 16 15 14 18 18 C 1.41394 * 120.24579 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00263 * 148.15420 * 18 17 16 20 20 C 1.39944 * 120.00080 * 328.14595 * 18 17 16 21 21 N 1.30831 * 119.99900 * 348.03119 * 20 18 17 22 22 Si 1.86793 * 120.00260 * 168.02745 * 20 18 17 23 23 H 1.48504 * 109.47102 * 60.00467 * 22 20 18 24 24 H 1.48501 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47303 * 300.00552 * 22 20 18 26 26 C 1.37600 * 119.87431 * 90.00075 * 13 10 9 27 27 H 1.08997 * 109.47012 * 299.99953 * 1 2 3 28 28 H 1.08995 * 109.47039 * 59.99641 * 1 2 3 29 29 H 1.09001 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47012 * 240.00047 * 2 1 3 31 31 H 1.09000 * 109.47431 * 120.00109 * 2 1 3 32 32 H 1.09005 * 109.46706 * 59.99685 * 3 2 1 33 33 H 1.09000 * 109.47081 * 300.00323 * 3 2 1 34 34 H 1.08998 * 109.46578 * 293.75941 * 6 4 3 35 35 H 1.08999 * 109.47118 * 53.76135 * 6 4 3 36 36 H 1.09006 * 109.46831 * 305.22357 * 7 6 4 37 37 H 1.08994 * 109.47274 * 65.22559 * 7 6 4 38 38 H 0.96703 * 113.99903 * 180.02562 * 8 7 6 39 39 H 0.97002 * 120.00058 * 54.03744 * 9 4 3 40 40 H 1.08000 * 119.74856 * 359.97438 * 14 13 10 41 41 H 1.08004 * 119.87617 * 180.25009 * 15 14 13 42 42 H 1.08001 * 120.13050 * 179.74571 * 16 15 14 43 43 H 0.97001 * 119.99956 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.12674 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8531 0.8409 6 6 4.0800 2.8796 0.1251 7 6 5.6021 2.8688 0.2809 8 8 6.0658 4.1991 0.5200 9 7 4.0578 0.8591 -1.2527 10 16 5.1278 -0.4043 -1.2158 11 8 6.1809 -0.0130 -0.3457 12 8 5.3390 -0.7909 -2.5669 13 6 4.3121 -1.7560 -0.4333 14 6 4.4019 -1.9149 0.9412 15 6 3.7607 -2.9701 1.5708 16 6 3.0358 -3.8796 0.8347 17 6 2.9424 -3.7316 -0.5613 18 6 2.2000 -4.6594 -1.3278 19 1 1.6942 -4.3360 -2.2255 20 6 2.1209 -5.9967 -0.9232 21 7 2.9117 -6.4431 0.0186 22 14 0.8862 -7.1445 -1.7278 23 1 1.1626 -7.2262 -3.1846 24 1 1.0015 -8.4967 -1.1250 25 1 -0.4875 -6.6228 -1.5132 26 6 3.5929 -2.6531 -1.1892 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.8103 3.4404 -0.7698 35 1 3.6287 3.3502 0.9986 36 1 5.8767 2.2316 1.1216 37 1 6.0579 2.4835 -0.6312 38 1 7.0243 4.2680 0.6285 39 1 3.7541 1.2127 -2.1033 40 1 4.9726 -1.2087 1.5261 41 1 3.8341 -3.0820 2.6426 42 1 2.5403 -4.7034 1.3268 43 1 2.8566 -7.3700 0.2993 44 1 3.5275 -2.5297 -2.2601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601483998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:08 Heat of formation + Delta-G solvation = -155.697143 kcal Electronic energy + Delta-G solvation = -27052.098197 eV Core-core repulsion = 23287.123137 eV Total energy + Delta-G solvation = -3764.975060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.52170 -39.08560 -38.14747 -37.26036 -36.88180 -35.58460 -34.29076 -31.86859 -31.79664 -31.55928 -28.71119 -27.30144 -24.60612 -23.65014 -22.82517 -22.07324 -21.82382 -20.69631 -19.65166 -18.46898 -18.26268 -17.66139 -17.31326 -16.82727 -16.54796 -16.28467 -15.80101 -15.65917 -15.21569 -15.07982 -14.88243 -14.43212 -14.28634 -14.20794 -13.78023 -13.71785 -13.24854 -13.18541 -13.03864 -13.00067 -12.84941 -12.77566 -12.60752 -12.54321 -12.39951 -12.28453 -12.21265 -11.74174 -11.63273 -11.51703 -11.40193 -11.34109 -11.11600 -10.82411 -10.38165 -9.78754 -9.43750 -8.66497 -6.44097 -0.47534 0.43849 0.88161 1.37190 1.46164 1.48138 2.14092 2.19933 2.59737 2.82181 3.22911 3.49678 3.53209 3.94354 4.05826 4.13646 4.29712 4.30921 4.36289 4.44380 4.45817 4.60306 4.61676 4.82223 4.82743 4.86707 4.91572 4.96405 5.08194 5.09330 5.12379 5.21512 5.23760 5.29669 5.40247 5.44622 5.53854 5.58418 5.62846 5.89887 5.98041 6.13508 6.17725 6.55898 6.84935 6.88536 6.89004 8.32853 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017837 B = 0.003999 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.410178 B = 7000.662374 C = 7563.560833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C -0.115 4.115 4 C 0.155 3.845 5 H 0.087 0.913 6 C -0.121 4.121 7 C 0.069 3.931 8 O -0.590 6.590 9 N -1.099 6.099 10 S 2.709 3.291 11 O -0.980 6.980 12 O -1.003 7.003 13 C -0.634 4.634 14 C -0.130 4.130 15 C -0.124 4.124 16 C -0.124 4.124 17 C 0.071 3.929 18 C -0.505 4.505 19 H 0.077 0.923 20 C 0.036 3.964 21 N -0.837 5.837 22 Si 0.980 3.020 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.129 4.129 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.394 0.606 39 H 0.427 0.573 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.288 0.712 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 14.796 2.371 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C -0.154 4.154 4 C 0.048 3.952 5 H 0.105 0.895 6 C -0.161 4.161 7 C -0.008 4.008 8 O -0.399 6.399 9 N -0.861 5.861 10 S 2.802 3.198 11 O -0.970 6.970 12 O -0.993 6.993 13 C -0.723 4.723 14 C -0.151 4.151 15 C -0.143 4.143 16 C -0.144 4.144 17 C 0.068 3.932 18 C -0.535 4.535 19 H 0.095 0.905 20 C -0.178 4.178 21 N -0.464 5.464 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.182 1.182 26 C -0.150 4.150 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.244 0.756 39 H 0.264 0.736 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.860 14.659 2.289 14.953 hybrid contribution -0.335 -1.663 -0.380 1.738 sum -2.195 12.997 1.909 13.318 Atomic orbital electron populations 1.21698 0.95401 1.00890 1.02317 1.21583 0.96397 0.97222 1.01792 1.21916 0.92478 0.96513 1.04494 1.20938 0.95541 0.94080 0.84651 0.89537 1.21864 0.93747 0.95800 1.04658 1.22269 0.95711 0.83151 0.99709 1.86351 1.29367 1.28812 1.95325 1.55344 1.65937 1.49645 1.15174 1.01059 0.73519 0.73005 0.72209 1.93504 1.52987 1.82417 1.68058 1.93504 1.85485 1.83510 1.36819 1.30123 1.17640 1.19486 1.05086 1.20437 1.02521 1.00167 0.91948 1.21099 0.98439 0.95298 0.99439 1.21525 1.00446 0.98362 0.94020 1.17913 0.90814 0.91808 0.92649 1.19767 1.29733 0.93989 1.10021 0.90505 1.26647 0.96198 1.00172 0.94750 1.69798 1.32550 1.17876 1.26196 0.85281 0.78801 0.76738 0.79115 1.18767 1.19372 1.18210 1.20790 0.98949 0.97796 0.97433 0.91573 0.91970 0.94692 0.93327 0.93127 0.88684 0.89685 0.89722 0.88589 0.93351 0.94436 0.75644 0.73641 0.84982 0.85754 0.87837 0.90140 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.13 -3.44 5.47 30.60 0.17 -3.27 16 3 C -0.12 -2.13 4.89 30.59 0.15 -1.98 16 4 C 0.15 3.25 2.24 44.99 0.10 3.35 16 5 H 0.09 1.97 7.42 -2.39 -0.02 1.96 16 6 C -0.12 -2.26 5.25 30.60 0.16 -2.10 16 7 C 0.07 1.56 6.03 71.98 0.43 1.99 16 8 O -0.59 -12.42 13.66 -148.98 -2.03 -14.46 16 9 N -1.10 -26.87 4.44 -169.40 -0.75 -27.63 16 10 S 2.71 93.30 5.57 -56.49 -0.31 92.98 16 11 O -0.98 -35.08 15.44 -128.00 -1.98 -37.06 16 12 O -1.00 -41.11 17.27 -128.00 -2.21 -43.32 16 13 C -0.63 -25.63 5.05 22.22 0.11 -25.52 16 14 C -0.13 -5.06 9.01 22.46 0.20 -4.86 16 15 C -0.12 -5.15 10.02 22.22 0.22 -4.93 16 16 C -0.12 -6.03 8.64 22.73 0.20 -5.83 16 17 C 0.07 3.64 5.50 -21.29 -0.12 3.52 16 18 C -0.50 -26.39 9.04 23.46 0.21 -26.18 16 19 H 0.08 3.88 7.87 -2.91 -0.02 3.86 16 20 C 0.04 1.77 5.21 85.26 0.44 2.22 16 21 N -0.84 -42.93 11.13 21.83 0.24 -42.68 16 22 Si 0.98 37.71 29.58 68.60 2.03 39.74 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 25 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 26 C -0.13 -6.03 8.68 22.73 0.20 -5.83 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.48 6.64 -2.39 -0.02 1.47 16 31 H 0.05 1.49 8.03 -2.39 -0.02 1.47 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.14 8.10 -2.38 -0.02 1.13 16 37 H 0.04 0.92 7.29 -2.39 -0.02 0.90 16 38 H 0.39 5.20 9.12 -74.06 -0.68 4.52 16 39 H 0.43 8.45 8.96 -96.74 -0.87 7.58 16 40 H 0.13 4.41 7.59 -2.91 -0.02 4.38 16 41 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.10 5.29 6.51 -2.91 -0.02 5.27 16 43 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 44 H 0.10 4.87 7.60 -2.91 -0.02 4.84 16 Total: -1.00 -65.97 371.84 -2.35 -68.32 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.53 Total: 36.25 kcal Atomic # 6 Polarization: -75.33 SS G_CDS: 3.20 Total: -72.14 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.51 Total: -70.31 kcal Atomic # 8 Polarization: -88.62 SS G_CDS: -6.22 Total: -94.84 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 16 Polarization: 93.30 SS G_CDS: -0.31 Total: 92.98 kcal Total: -65.97 -2.35 -68.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601483998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.378 kcal (2) G-P(sol) polarization free energy of solvation -65.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds