Wall clock time and date at job start Tue Mar 31 2020 15:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46479 * 2 1 4 4 C 1.52998 * 109.46479 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.48074 * 54.99514 * 4 3 2 6 6 C 1.53009 * 109.46877 * 174.99928 * 4 3 2 7 7 C 1.52998 * 109.46949 * 186.03543 * 6 4 3 8 8 O 1.42904 * 109.46904 * 180.89985 * 7 6 4 9 9 N 1.46503 * 109.47095 * 294.99067 * 4 3 2 10 10 S 1.65609 * 119.99573 * 114.03458 * 9 4 3 11 11 O 1.42103 * 106.39778 * 179.46831 * 10 9 4 12 12 O 1.42100 * 106.40100 * 312.38582 * 10 9 4 13 13 C 1.76199 * 107.21744 * 65.92753 * 10 9 4 14 14 C 1.38652 * 119.87445 * 268.58674 * 13 10 9 15 15 C 1.38620 * 120.50289 * 179.72143 * 14 13 10 16 16 C 1.37642 * 120.24040 * 0.55453 * 15 14 13 17 17 C 1.40688 * 119.74965 * 359.72349 * 16 15 14 18 18 C 1.41395 * 120.24706 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00420 * 153.93279 * 18 17 16 20 20 C 1.39946 * 119.99643 * 333.92462 * 18 17 16 21 21 N 1.30828 * 120.00069 * 340.78213 * 20 18 17 22 22 Si 1.86807 * 119.99908 * 160.78183 * 20 18 17 23 23 H 1.48501 * 109.47193 * 90.00081 * 22 20 18 24 24 H 1.48498 * 109.46787 * 210.00132 * 22 20 18 25 25 H 1.48495 * 109.46992 * 329.99736 * 22 20 18 26 26 C 1.37592 * 119.87494 * 88.85753 * 13 10 9 27 27 H 1.08997 * 109.47995 * 300.00402 * 1 2 3 28 28 H 1.09007 * 109.47253 * 60.01094 * 1 2 3 29 29 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47069 * 119.99068 * 2 1 3 31 31 H 1.08993 * 109.47598 * 239.99890 * 2 1 3 32 32 H 1.09000 * 109.46493 * 299.98954 * 3 2 1 33 33 H 1.08993 * 109.47296 * 59.99705 * 3 2 1 34 34 H 1.08996 * 109.46494 * 306.03332 * 6 4 3 35 35 H 1.08998 * 109.46820 * 66.03357 * 6 4 3 36 36 H 1.09003 * 109.47467 * 300.90185 * 7 6 4 37 37 H 1.09009 * 109.47125 * 60.90101 * 7 6 4 38 38 H 0.96705 * 113.99697 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00527 * 294.03896 * 9 4 3 40 40 H 1.08004 * 119.75316 * 0.02562 * 14 13 10 41 41 H 1.07995 * 119.88064 * 180.25113 * 15 14 13 42 42 H 1.07999 * 120.12238 * 179.74467 * 16 15 14 43 43 H 0.96999 * 119.99957 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.13016 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5698 1.4426 0.0006 5 1 3.9337 0.8531 -0.8408 6 6 4.0798 2.8797 -0.1251 7 6 5.6024 2.8692 -0.2758 8 8 6.0808 4.2123 -0.3722 9 7 4.0576 0.8593 1.2529 10 16 4.8844 -0.5755 1.2310 11 8 5.2268 -0.8618 2.5802 12 8 4.1292 -1.4614 0.4161 13 6 6.4019 -0.2902 0.3823 14 6 6.4764 -0.4951 -0.9870 15 6 7.6621 -0.2691 -1.6687 16 6 8.7830 0.1511 -0.9894 17 6 8.7206 0.3567 0.4009 18 6 9.8656 0.7887 1.1091 19 1 9.7543 1.3375 2.0326 20 6 11.1433 0.5051 0.6134 21 7 11.3068 -0.4506 -0.2649 22 14 12.6151 1.4910 1.2060 23 1 13.2035 0.8329 2.4002 24 1 13.6326 1.5587 0.1264 25 1 12.1794 2.8652 1.5623 26 6 7.5099 0.1297 1.0817 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9563 -0.8901 33 1 1.6765 1.9564 0.8899 34 1 3.6313 3.3490 -1.0007 35 1 3.8070 3.4415 0.7682 36 1 6.0501 2.3854 0.5923 37 1 5.8744 2.3209 -1.1778 38 1 7.0403 4.2819 -0.4703 39 1 3.8964 1.3133 2.0947 40 1 5.6028 -0.8285 -1.5274 41 1 7.7077 -0.4280 -2.7359 42 1 9.7069 0.3226 -1.5219 43 1 12.1923 -0.6469 -0.6088 44 1 7.4507 0.2848 2.1488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601483999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:13 Heat of formation + Delta-G solvation = -134.592311 kcal Electronic energy + Delta-G solvation = -27055.255651 eV Core-core repulsion = 23291.195766 eV Total energy + Delta-G solvation = -3764.059886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.17085 -37.66542 -36.65201 -36.09037 -35.30932 -33.90811 -33.38439 -30.67534 -30.14726 -29.87936 -27.79835 -25.54778 -23.62164 -21.97632 -21.22912 -20.97705 -20.88319 -19.26358 -18.05654 -17.12897 -17.01238 -16.09305 -15.98579 -15.28351 -14.99726 -14.89246 -14.76084 -14.46696 -13.97414 -13.53565 -13.42651 -13.38397 -13.20702 -12.71407 -12.63849 -12.02040 -11.94489 -11.68035 -11.61341 -11.51469 -11.43066 -11.39202 -11.34723 -11.28793 -11.12397 -10.93672 -10.76544 -10.70613 -10.59691 -10.54018 -9.86725 -9.75555 -9.66273 -9.37952 -9.18429 -8.10487 -7.76066 -6.99329 -4.59450 0.98955 2.12195 2.57180 2.96705 2.97250 3.03788 3.52421 3.78557 4.17652 4.24897 4.39454 4.86869 4.94728 4.99570 5.06709 5.19166 5.28281 5.32960 5.36012 5.51448 5.66693 5.72165 5.80074 5.87012 5.92777 5.96416 5.99073 6.11203 6.11962 6.22499 6.22947 6.43218 6.48432 6.58763 6.67742 6.77848 6.96666 7.13367 7.21011 7.31223 7.64449 7.73357 7.86469 7.86738 8.32999 8.60278 8.64975 9.97291 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.004043 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.910873 B = 6923.142258 C = 7529.988383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.126 4.126 4 C 0.159 3.841 5 H 0.094 0.906 6 C -0.126 4.126 7 C 0.070 3.930 8 O -0.582 6.582 9 N -1.116 6.116 10 S 2.682 3.318 11 O -0.974 6.974 12 O -0.969 6.969 13 C -0.630 4.630 14 C -0.149 4.149 15 C -0.119 4.119 16 C -0.118 4.118 17 C 0.095 3.905 18 C -0.463 4.463 19 H 0.082 0.918 20 C 0.077 3.923 21 N -0.791 5.791 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.125 4.125 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.382 0.618 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.284 0.716 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 5.606 -1.750 12.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.165 4.165 4 C 0.051 3.949 5 H 0.112 0.888 6 C -0.165 4.165 7 C -0.007 4.007 8 O -0.388 6.388 9 N -0.873 5.873 10 S 2.778 3.222 11 O -0.964 6.964 12 O -0.959 6.959 13 C -0.722 4.722 14 C -0.170 4.170 15 C -0.138 4.138 16 C -0.138 4.138 17 C 0.092 3.908 18 C -0.493 4.493 19 H 0.100 0.900 20 C -0.142 4.142 21 N -0.415 5.415 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.146 4.146 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.229 0.771 39 H 0.247 0.753 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.137 0.863 43 H 0.095 0.905 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.321 4.704 -1.615 13.288 hybrid contribution 2.007 0.678 0.129 2.122 sum -10.315 5.382 -1.486 11.729 Atomic orbital electron populations 1.21775 0.96326 1.01447 1.01257 1.21556 0.95105 0.96176 1.03565 1.21974 0.94186 0.97801 1.02545 1.20720 0.94140 0.94069 0.85928 0.88841 1.21875 0.95201 0.96203 1.03256 1.22293 0.93990 0.83143 1.01302 1.86316 1.27777 1.27667 1.97016 1.55736 1.72782 1.44381 1.14372 1.01899 0.74153 0.72636 0.73530 1.93545 1.84656 1.82832 1.35383 1.93529 1.70389 1.61540 1.70413 1.29764 1.18048 1.18516 1.05854 1.20069 0.98219 1.06863 0.91855 1.20797 0.93684 1.01306 0.98059 1.21541 0.97044 1.00842 0.94370 1.17639 0.91855 0.89511 0.91821 1.19583 0.89810 1.31816 1.08045 0.89956 1.25925 1.00947 0.93539 0.93773 1.69791 1.25591 1.22234 1.23896 0.86293 0.79964 0.81161 0.79309 1.19304 1.19991 1.18271 1.20731 0.93226 1.03012 0.97610 0.93124 0.93013 0.92873 0.91667 0.91068 0.90903 0.91441 0.90460 0.90844 0.92487 0.93067 0.77067 0.75297 0.87605 0.88463 0.86264 0.90482 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.13 -1.48 5.05 -26.73 -0.14 -1.61 16 3 C -0.13 -1.28 4.89 -26.73 -0.13 -1.41 16 4 C 0.16 1.90 2.26 -67.92 -0.15 1.75 16 5 H 0.09 1.19 7.66 -51.93 -0.40 0.79 16 6 C -0.13 -1.50 5.25 -26.73 -0.14 -1.64 16 7 C 0.07 1.02 6.69 37.16 0.25 1.27 16 8 O -0.58 -8.53 13.66 -35.23 -0.48 -9.01 16 9 N -1.12 -14.87 4.32 -4.89 -0.02 -14.89 16 10 S 2.68 47.85 5.60 -107.50 -0.60 47.24 16 11 O -0.97 -20.21 17.29 -57.17 -0.99 -21.20 16 12 O -0.97 -18.39 15.24 -57.17 -0.87 -19.26 16 13 C -0.63 -12.79 5.01 -39.66 -0.20 -12.99 16 14 C -0.15 -2.98 9.39 -39.29 -0.37 -3.35 16 15 C -0.12 -2.49 10.02 -39.66 -0.40 -2.88 16 16 C -0.12 -2.76 8.69 -38.87 -0.34 -3.09 16 17 C 0.10 2.31 5.55 -106.83 -0.59 1.72 16 18 C -0.46 -11.37 9.04 -37.74 -0.34 -11.71 16 19 H 0.08 1.94 7.92 -52.49 -0.42 1.53 16 20 C 0.08 1.80 5.09 -17.34 -0.09 1.72 16 21 N -0.79 -19.20 11.15 55.55 0.62 -18.58 16 22 Si 0.91 17.50 29.60 -169.99 -5.03 12.47 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 26 C -0.12 -2.81 8.66 -38.87 -0.34 -3.15 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.86 6.93 -51.93 -0.36 0.50 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.91 6.43 -51.93 -0.33 0.57 16 37 H 0.05 0.78 8.08 -51.92 -0.42 0.36 16 38 H 0.38 4.60 9.12 45.56 0.42 5.02 16 39 H 0.41 4.63 8.96 -34.48 -0.31 4.33 16 40 H 0.11 1.92 7.57 -52.48 -0.40 1.52 16 41 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.12 2.86 6.34 -52.49 -0.33 2.53 16 43 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 44 H 0.11 2.43 7.63 -52.49 -0.40 2.03 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -29.57 371.82 -10.27 -39.84 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -5.89 Total: 14.24 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: -2.60 Total: -36.46 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.60 Total: -33.47 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -2.34 Total: -49.47 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: 47.85 SS G_CDS: -0.60 Total: 47.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.57 -10.27 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601483999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.756 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds