Wall clock time and date at job start Tue Mar 31 2020 15:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46479 * 2 1 4 4 C 1.52998 * 109.46479 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.48074 * 54.99514 * 4 3 2 6 6 C 1.53009 * 109.46877 * 174.99928 * 4 3 2 7 7 C 1.52998 * 109.46949 * 186.03543 * 6 4 3 8 8 O 1.42904 * 109.46904 * 180.89985 * 7 6 4 9 9 N 1.46503 * 109.47095 * 294.99067 * 4 3 2 10 10 S 1.65609 * 119.99573 * 114.03458 * 9 4 3 11 11 O 1.42103 * 106.39778 * 179.46831 * 10 9 4 12 12 O 1.42100 * 106.40100 * 312.38582 * 10 9 4 13 13 C 1.76199 * 107.21744 * 65.92753 * 10 9 4 14 14 C 1.38652 * 119.87445 * 268.58674 * 13 10 9 15 15 C 1.38620 * 120.50289 * 179.72143 * 14 13 10 16 16 C 1.37642 * 120.24040 * 0.55453 * 15 14 13 17 17 C 1.40688 * 119.74965 * 359.72349 * 16 15 14 18 18 C 1.41395 * 120.24706 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00420 * 153.93279 * 18 17 16 20 20 C 1.39946 * 119.99643 * 333.92462 * 18 17 16 21 21 N 1.30828 * 120.00069 * 340.78213 * 20 18 17 22 22 Si 1.86807 * 119.99908 * 160.78183 * 20 18 17 23 23 H 1.48501 * 109.47193 * 90.00081 * 22 20 18 24 24 H 1.48498 * 109.46787 * 210.00132 * 22 20 18 25 25 H 1.48495 * 109.46992 * 329.99736 * 22 20 18 26 26 C 1.37592 * 119.87494 * 88.85753 * 13 10 9 27 27 H 1.08997 * 109.47995 * 300.00402 * 1 2 3 28 28 H 1.09007 * 109.47253 * 60.01094 * 1 2 3 29 29 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47069 * 119.99068 * 2 1 3 31 31 H 1.08993 * 109.47598 * 239.99890 * 2 1 3 32 32 H 1.09000 * 109.46493 * 299.98954 * 3 2 1 33 33 H 1.08993 * 109.47296 * 59.99705 * 3 2 1 34 34 H 1.08996 * 109.46494 * 306.03332 * 6 4 3 35 35 H 1.08998 * 109.46820 * 66.03357 * 6 4 3 36 36 H 1.09003 * 109.47467 * 300.90185 * 7 6 4 37 37 H 1.09009 * 109.47125 * 60.90101 * 7 6 4 38 38 H 0.96705 * 113.99697 * 180.02562 * 8 7 6 39 39 H 0.97000 * 120.00527 * 294.03896 * 9 4 3 40 40 H 1.08004 * 119.75316 * 0.02562 * 14 13 10 41 41 H 1.07995 * 119.88064 * 180.25113 * 15 14 13 42 42 H 1.07999 * 120.12238 * 179.74467 * 16 15 14 43 43 H 0.96999 * 119.99957 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.13016 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5698 1.4426 0.0006 5 1 3.9337 0.8531 -0.8408 6 6 4.0798 2.8797 -0.1251 7 6 5.6024 2.8692 -0.2758 8 8 6.0808 4.2123 -0.3722 9 7 4.0576 0.8593 1.2529 10 16 4.8844 -0.5755 1.2310 11 8 5.2268 -0.8618 2.5802 12 8 4.1292 -1.4614 0.4161 13 6 6.4019 -0.2902 0.3823 14 6 6.4764 -0.4951 -0.9870 15 6 7.6621 -0.2691 -1.6687 16 6 8.7830 0.1511 -0.9894 17 6 8.7206 0.3567 0.4009 18 6 9.8656 0.7887 1.1091 19 1 9.7543 1.3375 2.0326 20 6 11.1433 0.5051 0.6134 21 7 11.3068 -0.4506 -0.2649 22 14 12.6151 1.4910 1.2060 23 1 13.2035 0.8329 2.4002 24 1 13.6326 1.5587 0.1264 25 1 12.1794 2.8652 1.5623 26 6 7.5099 0.1297 1.0817 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9563 -0.8901 33 1 1.6765 1.9564 0.8899 34 1 3.6313 3.3490 -1.0007 35 1 3.8070 3.4415 0.7682 36 1 6.0501 2.3854 0.5923 37 1 5.8744 2.3209 -1.1778 38 1 7.0403 4.2819 -0.4703 39 1 3.8964 1.3133 2.0947 40 1 5.6028 -0.8285 -1.5274 41 1 7.7077 -0.4280 -2.7359 42 1 9.7069 0.3226 -1.5219 43 1 12.1923 -0.6469 -0.6088 44 1 7.4507 0.2848 2.1488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601483999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:12 Heat of formation + Delta-G solvation = -155.375643 kcal Electronic energy + Delta-G solvation = -27056.156884 eV Core-core repulsion = 23291.195766 eV Total energy + Delta-G solvation = -3764.961119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.54389 -39.06969 -38.16457 -37.21907 -36.85597 -35.65644 -34.31199 -31.91877 -31.79115 -31.56668 -28.69936 -27.33131 -24.60436 -23.66361 -22.82451 -22.08024 -21.82279 -20.70557 -19.66169 -18.46045 -18.27910 -17.71687 -17.24341 -16.83601 -16.55837 -16.28821 -15.83802 -15.66808 -15.28780 -15.05424 -14.93658 -14.35171 -14.30910 -14.19993 -13.78830 -13.70624 -13.27189 -13.16570 -13.04462 -13.03083 -12.87966 -12.77217 -12.59857 -12.53630 -12.39182 -12.29919 -12.18765 -11.74687 -11.64670 -11.55012 -11.39256 -11.33053 -11.11597 -10.84626 -10.37918 -9.81990 -9.52593 -8.74188 -6.43937 -0.47223 0.41837 0.85879 1.37490 1.43736 1.51842 2.14343 2.18612 2.55781 2.81303 3.22151 3.49529 3.52380 3.96877 4.04774 4.10300 4.28807 4.29393 4.35650 4.43494 4.46548 4.60539 4.66255 4.79239 4.83857 4.84899 4.90937 4.96437 5.06848 5.10544 5.12380 5.20351 5.21126 5.28824 5.37631 5.41763 5.53080 5.57987 5.62166 5.89774 5.94170 6.11189 6.17119 6.53382 6.79748 6.80896 6.85849 8.24876 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.004043 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.910873 B = 6923.142258 C = 7529.988383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.119 4.119 4 C 0.155 3.845 5 H 0.087 0.913 6 C -0.118 4.118 7 C 0.068 3.932 8 O -0.589 6.589 9 N -1.099 6.099 10 S 2.708 3.292 11 O -1.003 7.003 12 O -0.976 6.976 13 C -0.633 4.633 14 C -0.141 4.141 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.071 3.929 18 C -0.500 4.500 19 H 0.079 0.921 20 C 0.040 3.960 21 N -0.824 5.824 22 Si 0.978 3.022 23 H -0.266 1.266 24 H -0.266 1.266 25 H -0.255 1.255 26 C -0.140 4.140 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.390 0.610 39 H 0.426 0.574 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.291 0.709 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 6.772 -2.296 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.158 4.158 4 C 0.048 3.952 5 H 0.105 0.895 6 C -0.157 4.157 7 C -0.010 4.010 8 O -0.397 6.397 9 N -0.861 5.861 10 S 2.801 3.199 11 O -0.994 6.994 12 O -0.966 6.966 13 C -0.722 4.722 14 C -0.162 4.162 15 C -0.139 4.139 16 C -0.155 4.155 17 C 0.068 3.932 18 C -0.530 4.530 19 H 0.097 0.903 20 C -0.176 4.176 21 N -0.450 5.450 22 Si 0.799 3.201 23 H -0.191 1.191 24 H -0.190 1.190 25 H -0.179 1.179 26 C -0.161 4.161 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.239 0.761 39 H 0.263 0.737 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.021 5.872 -2.172 15.356 hybrid contribution 2.381 0.295 0.250 2.412 sum -11.640 6.167 -1.922 13.312 Atomic orbital electron populations 1.21753 0.94706 1.01659 1.02437 1.21588 0.96653 0.96844 1.01943 1.21960 0.92130 0.97193 1.04524 1.20947 0.95705 0.93886 0.84671 0.89507 1.21848 0.93054 0.96176 1.04645 1.22325 0.95900 0.82888 0.99893 1.86291 1.28747 1.27684 1.96939 1.55363 1.71441 1.43384 1.15897 1.01113 0.73219 0.73318 0.72275 1.93502 1.85071 1.83964 1.36835 1.93520 1.69894 1.62642 1.70533 1.30183 1.18935 1.16854 1.06234 1.20413 0.98665 1.05253 0.91881 1.21095 0.93146 1.00203 0.99455 1.21513 0.97490 1.02293 0.94226 1.17919 0.92582 0.90147 0.92546 1.19820 0.91031 1.33379 1.08725 0.90334 1.26699 1.03203 0.93985 0.93695 1.69833 1.26625 1.23385 1.25121 0.85253 0.76447 0.79538 0.78851 1.19139 1.18985 1.17904 1.20738 0.93725 1.04127 0.97519 0.92153 0.91607 0.93250 0.93647 0.92424 0.88556 0.89787 0.88590 0.89756 0.94417 0.94163 0.76133 0.73725 0.85149 0.85827 0.87578 0.89832 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.13 -2.79 5.05 30.60 0.15 -2.63 16 3 C -0.12 -2.01 4.89 30.60 0.15 -1.86 16 4 C 0.15 3.33 2.26 44.99 0.10 3.43 16 5 H 0.09 2.02 7.66 -2.39 -0.02 2.00 16 6 C -0.12 -2.50 5.25 30.60 0.16 -2.34 16 7 C 0.07 1.91 6.69 71.98 0.48 2.39 16 8 O -0.59 -16.72 13.66 -148.98 -2.04 -18.75 16 9 N -1.10 -27.60 4.32 -169.38 -0.73 -28.34 16 10 S 2.71 94.92 5.60 -56.49 -0.32 94.60 16 11 O -1.00 -41.69 17.29 -128.00 -2.21 -43.90 16 12 O -0.98 -35.91 15.24 -128.00 -1.95 -37.86 16 13 C -0.63 -25.72 5.01 22.22 0.11 -25.60 16 14 C -0.14 -5.54 9.39 22.46 0.21 -5.33 16 15 C -0.12 -4.97 10.02 22.22 0.22 -4.75 16 16 C -0.14 -6.48 8.69 22.73 0.20 -6.29 16 17 C 0.07 3.59 5.55 -21.29 -0.12 3.47 16 18 C -0.50 -25.56 9.04 23.46 0.21 -25.34 16 19 H 0.08 3.89 7.92 -2.91 -0.02 3.87 16 20 C 0.04 1.91 5.09 85.26 0.43 2.35 16 21 N -0.82 -41.11 11.15 21.83 0.24 -40.87 16 22 Si 0.98 36.40 29.60 68.60 2.03 38.43 16 23 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 26 C -0.14 -6.52 8.66 22.73 0.20 -6.32 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 1.12 6.93 -2.39 -0.02 1.11 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.20 6.43 -2.39 -0.02 1.18 16 37 H 0.04 1.20 8.08 -2.38 -0.02 1.18 16 38 H 0.39 9.36 9.12 -74.05 -0.68 8.69 16 39 H 0.43 8.79 8.96 -96.74 -0.87 7.92 16 40 H 0.13 4.45 7.57 -2.91 -0.02 4.43 16 41 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.11 5.29 6.34 -2.91 -0.02 5.27 16 43 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 44 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 Total: -1.00 -64.50 371.82 -2.27 -66.77 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.52 Total: 40.48 kcal Atomic # 6 Polarization: -73.79 SS G_CDS: 3.23 Total: -70.57 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -0.49 Total: -69.20 kcal Atomic # 8 Polarization: -94.32 SS G_CDS: -6.20 Total: -100.52 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Atomic # 16 Polarization: 94.92 SS G_CDS: -0.32 Total: 94.60 kcal Total: -64.50 -2.27 -66.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601483999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.606 kcal (2) G-P(sol) polarization free energy of solvation -64.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds