Wall clock time and date at job start Tue Mar 31 2020 15:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 C 1.52999 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46925 * 304.99673 * 4 3 2 6 6 C 1.53000 * 109.46961 * 184.99909 * 4 3 2 7 7 C 1.53002 * 109.46821 * 175.62580 * 6 4 3 8 8 O 1.42914 * 109.46951 * 185.46119 * 7 6 4 9 9 N 1.46496 * 109.47251 * 65.00095 * 4 3 2 10 10 S 1.65608 * 120.00064 * 233.91442 * 9 4 3 11 11 O 1.42105 * 106.40068 * 314.31255 * 10 9 4 12 12 O 1.42093 * 106.40391 * 181.39055 * 10 9 4 13 13 C 1.76199 * 107.21566 * 67.84820 * 10 9 4 14 14 C 1.37639 * 120.13022 * 247.99441 * 13 10 9 15 15 C 1.38613 * 120.24794 * 180.02562 * 14 13 10 16 16 C 1.38651 * 120.50442 * 0.02562 * 15 14 13 17 17 C 1.37604 * 120.24583 * 359.97438 * 16 15 14 18 18 C 1.40701 * 120.12530 * 68.00379 * 13 10 9 19 19 C 1.41393 * 120.24514 * 0.02562 * 18 13 10 20 20 H 1.08003 * 120.00048 * 324.62241 * 19 18 13 21 21 C 1.39946 * 119.99725 * 144.62412 * 19 18 13 22 22 N 1.30816 * 120.00368 * 354.37534 * 21 19 18 23 23 Si 1.86806 * 119.99741 * 174.37902 * 21 19 18 24 24 H 1.48496 * 109.47229 * 59.99654 * 23 21 19 25 25 H 1.48492 * 109.46925 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46748 * 299.99711 * 23 21 19 27 27 H 1.09000 * 109.47187 * 300.00072 * 1 2 3 28 28 H 1.09004 * 109.46977 * 60.00130 * 1 2 3 29 29 H 1.09004 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 239.99928 * 2 1 3 31 31 H 1.08995 * 109.47092 * 119.99841 * 2 1 3 32 32 H 1.09000 * 109.47216 * 59.99946 * 3 2 1 33 33 H 1.09004 * 109.47157 * 299.99760 * 3 2 1 34 34 H 1.08997 * 109.47352 * 295.62886 * 6 4 3 35 35 H 1.09000 * 109.47418 * 55.63009 * 6 4 3 36 36 H 1.08995 * 109.47571 * 305.46313 * 7 6 4 37 37 H 1.08995 * 109.47225 * 65.46914 * 7 6 4 38 38 H 0.96699 * 113.99888 * 180.02562 * 8 7 6 39 39 H 0.96998 * 120.00326 * 53.91095 * 9 4 3 40 40 H 1.08003 * 119.87446 * 359.97438 * 14 13 10 41 41 H 1.08005 * 119.74444 * 180.02562 * 15 14 13 42 42 H 1.07994 * 119.87939 * 180.02562 * 16 15 14 43 43 H 1.07994 * 120.12156 * 179.72439 * 17 16 15 44 44 H 0.97002 * 120.00398 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0800 2.8795 0.1251 7 6 5.6061 2.8713 0.2341 8 8 6.0733 4.1995 0.4788 9 7 4.0578 0.8590 -1.2527 10 16 5.1302 -0.4024 -1.2159 11 8 6.1232 -0.0570 -0.2597 12 8 5.4298 -0.7141 -2.5695 13 6 4.2735 -1.7963 -0.5621 14 6 4.6134 -2.2991 0.6733 15 6 3.9415 -3.3960 1.1897 16 6 2.9214 -3.9993 0.4701 17 6 2.5647 -3.5136 -0.7670 18 6 3.2394 -2.3999 -1.3010 19 6 2.8820 -1.8926 -2.5714 20 1 2.9222 -0.8298 -2.7593 21 6 2.4762 -2.7676 -3.5854 22 7 2.5321 -4.0606 -3.3948 23 14 1.8546 -2.0892 -5.2111 24 1 2.9200 -1.2731 -5.8467 25 1 1.4895 -3.2138 -6.1095 26 1 0.6596 -1.2415 -4.9691 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7816 3.4493 -0.7550 35 1 3.6545 3.3394 1.0170 36 1 5.9081 2.2226 1.0563 37 1 6.0349 2.5012 -0.6971 38 1 7.0344 4.2698 0.5591 39 1 3.7526 1.2114 -2.1033 40 1 5.4073 -1.8378 1.2420 41 1 4.2146 -3.7836 2.1601 42 1 2.4043 -4.8531 0.8823 43 1 1.7729 -3.9878 -1.3277 44 1 2.2512 -4.6672 -4.0977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601484511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:17 Heat of formation + Delta-G solvation = -132.427564 kcal Electronic energy + Delta-G solvation = -27964.328364 eV Core-core repulsion = 24200.362349 eV Total energy + Delta-G solvation = -3763.966015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.01029 -37.60000 -36.23682 -36.12737 -34.86063 -33.84310 -32.99940 -30.59600 -30.14289 -29.61450 -27.55722 -25.53639 -23.44897 -21.69972 -21.23189 -20.84380 -20.60092 -18.81290 -17.73766 -17.23867 -16.90546 -16.04228 -15.87195 -15.40129 -14.78343 -14.55814 -14.35351 -14.26002 -13.75578 -13.35758 -13.27793 -13.11368 -13.02887 -12.73743 -12.39833 -11.99677 -11.73504 -11.50815 -11.35712 -11.31112 -11.18913 -11.14647 -11.05360 -11.02738 -11.00963 -10.77364 -10.54304 -10.50149 -10.37753 -10.05990 -9.91918 -9.77802 -9.50181 -9.37969 -8.82288 -8.05679 -7.54350 -6.98252 -4.77269 1.49646 2.29891 2.72532 2.98236 3.00319 3.12511 3.80714 3.89832 4.25898 4.43765 4.70417 5.06518 5.13035 5.24505 5.30463 5.44724 5.48777 5.61372 5.63326 5.71142 5.84493 5.93366 5.99428 6.00259 6.07250 6.18787 6.20078 6.24405 6.28931 6.35137 6.48496 6.57692 6.75650 6.79492 6.90178 7.04532 7.05376 7.28016 7.44731 7.53399 7.65480 7.72488 7.76087 7.86672 8.25206 8.52679 8.61149 9.96185 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.005856 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.273645 B = 4780.419514 C = 5038.367590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C -0.122 4.122 4 C 0.163 3.837 5 H 0.089 0.911 6 C -0.127 4.127 7 C 0.074 3.926 8 O -0.582 6.582 9 N -1.117 6.117 10 S 2.695 3.305 11 O -0.997 6.997 12 O -0.962 6.962 13 C -0.767 4.767 14 C -0.007 4.007 15 C -0.243 4.243 16 C -0.077 4.077 17 C -0.150 4.150 18 C 0.198 3.802 19 C -0.453 4.453 20 H 0.085 0.915 21 C 0.084 3.916 22 N -0.786 5.786 23 Si 0.911 3.089 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.261 1.261 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.377 0.623 39 H 0.412 0.588 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 8.133 4.383 9.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C -0.161 4.161 4 C 0.055 3.945 5 H 0.107 0.893 6 C -0.166 4.166 7 C -0.004 4.004 8 O -0.388 6.388 9 N -0.873 5.873 10 S 2.792 3.208 11 O -0.988 6.988 12 O -0.953 6.953 13 C -0.862 4.862 14 C -0.026 4.026 15 C -0.264 4.264 16 C -0.096 4.096 17 C -0.170 4.170 18 C 0.193 3.807 19 C -0.482 4.482 20 H 0.103 0.897 21 C -0.137 4.137 22 N -0.410 5.410 23 Si 0.734 3.266 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.185 1.185 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.223 0.777 39 H 0.245 0.755 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.848 8.031 4.117 9.212 hybrid contribution -0.406 -0.442 -0.758 0.967 sum -2.253 7.588 3.359 8.599 Atomic orbital electron populations 1.21679 0.96622 1.01382 1.00425 1.21832 0.95328 0.95887 1.04962 1.21930 0.93851 0.98374 1.01988 1.20614 0.94480 0.93114 0.86323 0.89269 1.21906 0.94477 0.97115 1.03122 1.22270 0.94822 0.82805 1.00460 1.86393 1.27041 1.29804 1.95549 1.55847 1.66311 1.52042 1.13080 1.01279 0.73043 0.73144 0.73323 1.93446 1.56894 1.84106 1.64322 1.93556 1.83182 1.83702 1.34818 1.29979 1.19470 1.26689 1.10061 1.20253 0.95429 0.94287 0.92675 1.20502 1.03381 1.01686 1.00805 1.20912 0.96128 0.97305 0.95228 1.21460 1.01766 0.99537 0.94251 1.16914 0.85035 0.89010 0.89691 1.19688 1.38359 0.95395 0.94763 0.89675 1.25840 0.92294 0.94403 1.01120 1.69732 1.33237 1.03164 1.34875 0.86279 0.80202 0.79766 0.80323 1.18032 1.20040 1.18487 0.93897 0.93310 0.92834 0.88315 0.92119 0.91634 0.91598 0.90999 0.90499 0.92466 0.93542 0.77683 0.75511 0.87496 0.88799 0.88893 0.86126 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.14 -2.24 5.47 -26.73 -0.15 -2.38 16 3 C -0.12 -1.60 4.89 -26.73 -0.13 -1.73 16 4 C 0.16 2.31 2.27 -67.93 -0.15 2.15 16 5 H 0.09 1.33 7.70 -51.93 -0.40 0.93 16 6 C -0.13 -1.65 5.26 -26.73 -0.14 -1.79 16 7 C 0.07 1.05 5.99 37.16 0.22 1.27 16 8 O -0.58 -7.70 13.66 -35.23 -0.48 -8.18 16 9 N -1.12 -18.14 3.70 -4.89 -0.02 -18.16 16 10 S 2.69 55.60 4.89 -107.50 -0.53 55.07 16 11 O -1.00 -20.85 15.03 -57.17 -0.86 -21.71 16 12 O -0.96 -23.27 16.44 -57.17 -0.94 -24.21 16 13 C -0.77 -17.10 5.51 -38.87 -0.21 -17.31 16 14 C -0.01 -0.14 9.53 -39.66 -0.38 -0.52 16 15 C -0.24 -5.03 10.05 -39.29 -0.39 -5.43 16 16 C -0.08 -1.63 10.02 -39.66 -0.40 -2.03 16 17 C -0.15 -3.50 8.63 -38.87 -0.34 -3.84 16 18 C 0.20 4.68 3.92 -106.83 -0.42 4.26 16 19 C -0.45 -10.74 6.10 -37.74 -0.23 -10.97 16 20 H 0.09 1.88 5.94 -52.48 -0.31 1.56 16 21 C 0.08 1.97 5.31 -17.34 -0.09 1.87 16 22 N -0.79 -19.04 11.04 55.55 0.61 -18.43 16 23 Si 0.91 17.91 29.56 -169.99 -5.03 12.89 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.79 3.92 -51.93 -0.20 1.59 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 37 H 0.05 0.70 7.53 -51.93 -0.39 0.31 16 38 H 0.38 3.39 9.12 45.56 0.42 3.80 16 39 H 0.41 6.03 8.75 -34.47 -0.30 5.73 16 40 H 0.11 2.11 7.33 -52.48 -0.38 1.72 16 41 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 2.88 6.55 -52.49 -0.34 2.54 16 44 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -29.40 362.78 -9.91 -39.31 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -5.69 Total: 16.04 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: -2.44 Total: -38.09 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.60 Total: -36.59 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -2.28 Total: -54.09 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 55.60 SS G_CDS: -0.53 Total: 55.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.40 -9.91 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601484511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.121 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds