Wall clock time and date at job start Tue Mar 31 2020 15:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 C 1.52999 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46925 * 304.99673 * 4 3 2 6 6 C 1.53000 * 109.46961 * 184.99909 * 4 3 2 7 7 C 1.53002 * 109.46821 * 175.62580 * 6 4 3 8 8 O 1.42914 * 109.46951 * 185.46119 * 7 6 4 9 9 N 1.46496 * 109.47251 * 65.00095 * 4 3 2 10 10 S 1.65608 * 120.00064 * 233.91442 * 9 4 3 11 11 O 1.42105 * 106.40068 * 314.31255 * 10 9 4 12 12 O 1.42093 * 106.40391 * 181.39055 * 10 9 4 13 13 C 1.76199 * 107.21566 * 67.84820 * 10 9 4 14 14 C 1.37639 * 120.13022 * 247.99441 * 13 10 9 15 15 C 1.38613 * 120.24794 * 180.02562 * 14 13 10 16 16 C 1.38651 * 120.50442 * 0.02562 * 15 14 13 17 17 C 1.37604 * 120.24583 * 359.97438 * 16 15 14 18 18 C 1.40701 * 120.12530 * 68.00379 * 13 10 9 19 19 C 1.41393 * 120.24514 * 0.02562 * 18 13 10 20 20 H 1.08003 * 120.00048 * 324.62241 * 19 18 13 21 21 C 1.39946 * 119.99725 * 144.62412 * 19 18 13 22 22 N 1.30816 * 120.00368 * 354.37534 * 21 19 18 23 23 Si 1.86806 * 119.99741 * 174.37902 * 21 19 18 24 24 H 1.48496 * 109.47229 * 59.99654 * 23 21 19 25 25 H 1.48492 * 109.46925 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46748 * 299.99711 * 23 21 19 27 27 H 1.09000 * 109.47187 * 300.00072 * 1 2 3 28 28 H 1.09004 * 109.46977 * 60.00130 * 1 2 3 29 29 H 1.09004 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 239.99928 * 2 1 3 31 31 H 1.08995 * 109.47092 * 119.99841 * 2 1 3 32 32 H 1.09000 * 109.47216 * 59.99946 * 3 2 1 33 33 H 1.09004 * 109.47157 * 299.99760 * 3 2 1 34 34 H 1.08997 * 109.47352 * 295.62886 * 6 4 3 35 35 H 1.09000 * 109.47418 * 55.63009 * 6 4 3 36 36 H 1.08995 * 109.47571 * 305.46313 * 7 6 4 37 37 H 1.08995 * 109.47225 * 65.46914 * 7 6 4 38 38 H 0.96699 * 113.99888 * 180.02562 * 8 7 6 39 39 H 0.96998 * 120.00326 * 53.91095 * 9 4 3 40 40 H 1.08003 * 119.87446 * 359.97438 * 14 13 10 41 41 H 1.08005 * 119.74444 * 180.02562 * 15 14 13 42 42 H 1.07994 * 119.87939 * 180.02562 * 16 15 14 43 43 H 1.07994 * 120.12156 * 179.72439 * 17 16 15 44 44 H 0.97002 * 120.00398 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0800 2.8795 0.1251 7 6 5.6061 2.8713 0.2341 8 8 6.0733 4.1995 0.4788 9 7 4.0578 0.8590 -1.2527 10 16 5.1302 -0.4024 -1.2159 11 8 6.1232 -0.0570 -0.2597 12 8 5.4298 -0.7141 -2.5695 13 6 4.2735 -1.7963 -0.5621 14 6 4.6134 -2.2991 0.6733 15 6 3.9415 -3.3960 1.1897 16 6 2.9214 -3.9993 0.4701 17 6 2.5647 -3.5136 -0.7670 18 6 3.2394 -2.3999 -1.3010 19 6 2.8820 -1.8926 -2.5714 20 1 2.9222 -0.8298 -2.7593 21 6 2.4762 -2.7676 -3.5854 22 7 2.5321 -4.0606 -3.3948 23 14 1.8546 -2.0892 -5.2111 24 1 2.9200 -1.2731 -5.8467 25 1 1.4895 -3.2138 -6.1095 26 1 0.6596 -1.2415 -4.9691 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7816 3.4493 -0.7550 35 1 3.6545 3.3394 1.0170 36 1 5.9081 2.2226 1.0563 37 1 6.0349 2.5012 -0.6971 38 1 7.0344 4.2698 0.5591 39 1 3.7526 1.2114 -2.1033 40 1 5.4073 -1.8378 1.2420 41 1 4.2146 -3.7836 2.1601 42 1 2.4043 -4.8531 0.8823 43 1 1.7729 -3.9878 -1.3277 44 1 2.2512 -4.6672 -4.0977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601484511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:16 Heat of formation + Delta-G solvation = -152.993905 kcal Electronic energy + Delta-G solvation = -27965.220188 eV Core-core repulsion = 24200.362349 eV Total energy + Delta-G solvation = -3764.857839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.47720 -38.99226 -37.91562 -37.23759 -36.60612 -35.56300 -34.19481 -32.08827 -31.58271 -31.32021 -28.67015 -27.27346 -24.57771 -23.39265 -22.91245 -22.02214 -21.75499 -20.35900 -19.45734 -18.55107 -18.25854 -17.67479 -17.24492 -16.99279 -16.16341 -15.99951 -15.76824 -15.58088 -15.07844 -14.96091 -14.80460 -14.41607 -14.35203 -14.17785 -13.66208 -13.65603 -13.18205 -12.95320 -12.91500 -12.81159 -12.75816 -12.74793 -12.53416 -12.39170 -12.31767 -12.22614 -12.14505 -11.68550 -11.61176 -11.54952 -11.32458 -11.10096 -11.04019 -10.83484 -10.20013 -9.76872 -9.27173 -8.70456 -6.54852 -0.11962 0.57545 1.02725 1.37957 1.47307 1.53730 2.19009 2.39652 2.71994 3.04772 3.24769 3.51226 3.86879 3.97825 4.10729 4.18941 4.34811 4.36078 4.41878 4.49422 4.54108 4.60418 4.67229 4.75153 4.85398 4.88579 4.98393 5.04761 5.15097 5.16036 5.18188 5.21787 5.32050 5.36217 5.45486 5.57193 5.61396 5.74731 5.81091 5.88123 6.04049 6.13837 6.29933 6.52419 6.77278 6.87131 6.88509 8.26500 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.005856 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.273645 B = 4780.419514 C = 5038.367590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C -0.115 4.115 4 C 0.160 3.840 5 H 0.081 0.919 6 C -0.121 4.121 7 C 0.073 3.927 8 O -0.589 6.589 9 N -1.105 6.105 10 S 2.712 3.288 11 O -1.002 7.002 12 O -1.002 7.002 13 C -0.778 4.778 14 C -0.018 4.018 15 C -0.243 4.243 16 C -0.077 4.077 17 C -0.175 4.175 18 C 0.186 3.814 19 C -0.475 4.475 20 H 0.093 0.907 21 C 0.042 3.958 22 N -0.821 5.821 23 Si 0.965 3.035 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.244 1.244 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.032 0.968 38 H 0.394 0.606 39 H 0.420 0.580 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 9.905 5.263 11.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C -0.153 4.153 4 C 0.053 3.947 5 H 0.099 0.901 6 C -0.160 4.160 7 C -0.005 4.005 8 O -0.397 6.397 9 N -0.864 5.864 10 S 2.809 3.191 11 O -0.992 6.992 12 O -0.992 6.992 13 C -0.872 4.872 14 C -0.037 4.037 15 C -0.263 4.263 16 C -0.096 4.096 17 C -0.195 4.195 18 C 0.181 3.819 19 C -0.504 4.504 20 H 0.110 0.890 21 C -0.175 4.175 22 N -0.446 5.446 23 Si 0.785 3.215 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.167 1.167 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.243 0.757 39 H 0.256 0.744 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.529 9.793 5.015 11.290 hybrid contribution -0.114 -0.963 -0.872 1.304 sum -2.644 8.830 4.144 10.106 Atomic orbital electron populations 1.21645 0.95491 1.00799 1.01831 1.21791 0.96418 0.97241 1.02881 1.21893 0.92631 0.96896 1.03927 1.20816 0.95412 0.93716 0.84785 0.90092 1.21860 0.93586 0.96046 1.04502 1.22219 0.95765 0.83163 0.99380 1.86353 1.28901 1.29001 1.95424 1.55464 1.65823 1.50571 1.14571 1.00604 0.73181 0.73212 0.72145 1.93432 1.57476 1.84125 1.64187 1.93500 1.84160 1.84639 1.36904 1.30252 1.19041 1.27618 1.10257 1.20556 0.95900 0.94643 0.92628 1.20866 1.02548 1.01039 1.01832 1.21219 0.96153 0.97735 0.94495 1.21469 1.02272 1.00421 0.95298 1.17084 0.85425 0.89323 0.90044 1.19935 1.39319 0.95931 0.95232 0.88956 1.26626 0.92261 0.94602 1.03980 1.69794 1.34708 1.04117 1.36009 0.85482 0.79894 0.79390 0.76707 1.18970 1.19278 1.16701 0.91765 0.92554 0.94474 0.90919 0.93769 0.88988 0.90238 0.89962 0.88620 0.93360 0.94976 0.75699 0.74415 0.86024 0.85807 0.86476 0.87597 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.15 -4.42 5.47 30.59 0.17 -4.25 16 3 C -0.11 -2.70 4.89 30.59 0.15 -2.55 16 4 C 0.16 4.23 2.27 44.99 0.10 4.33 16 5 H 0.08 2.30 7.70 -2.39 -0.02 2.28 16 6 C -0.12 -2.80 5.26 30.59 0.16 -2.64 16 7 C 0.07 1.94 5.99 71.98 0.43 2.37 16 8 O -0.59 -14.25 13.66 -148.98 -2.04 -16.29 16 9 N -1.10 -34.94 3.70 -169.39 -0.63 -35.56 16 10 S 2.71 112.01 4.89 -56.49 -0.28 111.74 16 11 O -1.00 -41.48 15.03 -128.00 -1.92 -43.41 16 12 O -1.00 -49.21 16.44 -128.00 -2.10 -51.32 16 13 C -0.78 -34.87 5.51 22.73 0.13 -34.75 16 14 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 15 C -0.24 -9.72 10.05 22.46 0.23 -9.49 16 16 C -0.08 -3.26 10.02 22.22 0.22 -3.04 16 17 C -0.17 -8.32 8.63 22.73 0.20 -8.13 16 18 C 0.19 8.94 3.92 -21.29 -0.08 8.86 16 19 C -0.48 -22.97 6.10 23.46 0.14 -22.83 16 20 H 0.09 4.14 5.94 -2.91 -0.02 4.12 16 21 C 0.04 2.00 5.31 85.26 0.45 2.45 16 22 N -0.82 -40.96 11.04 21.83 0.24 -40.71 16 23 Si 0.96 36.87 29.56 68.60 2.03 38.90 16 24 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 25 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 26 H -0.24 -8.54 7.11 99.48 0.71 -7.83 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 2.63 3.92 -2.39 -0.01 2.62 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.36 7.93 -2.39 -0.02 1.34 16 37 H 0.03 0.94 7.53 -2.39 -0.02 0.92 16 38 H 0.39 6.31 9.12 -74.06 -0.68 5.63 16 39 H 0.42 11.92 8.75 -96.75 -0.85 11.07 16 40 H 0.12 4.66 7.33 -2.91 -0.02 4.64 16 41 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 42 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.11 5.28 6.55 -2.91 -0.02 5.26 16 44 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 Total: -1.00 -63.55 362.78 -1.97 -65.52 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -0.49 Total: 44.37 kcal Atomic # 6 Polarization: -76.46 SS G_CDS: 3.22 Total: -73.24 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -0.39 Total: -76.28 kcal Atomic # 8 Polarization: -104.95 SS G_CDS: -6.06 Total: -111.01 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Atomic # 16 Polarization: 112.01 SS G_CDS: -0.28 Total: 111.74 kcal Total: -63.55 -1.97 -65.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601484511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.475 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds