Wall clock time and date at job start Tue Mar 31 2020 15:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47267 * 182.65384 * 3 2 1 5 5 H 1.08999 * 109.47006 * 53.20355 * 4 3 2 6 6 C 1.52996 * 109.47656 * 173.20124 * 4 3 2 7 7 C 1.52996 * 109.47678 * 184.99909 * 6 4 3 8 8 O 1.42901 * 109.47320 * 180.02562 * 7 6 4 9 9 N 1.46498 * 109.47264 * 293.20625 * 4 3 2 10 10 S 1.65600 * 120.00201 * 112.10758 * 9 4 3 11 11 O 1.42111 * 106.40009 * 311.76626 * 10 9 4 12 12 O 1.42098 * 106.40417 * 178.85463 * 10 9 4 13 13 C 1.76198 * 107.22111 * 65.30779 * 10 9 4 14 14 C 1.37648 * 120.12784 * 246.07396 * 13 10 9 15 15 C 1.38609 * 120.24118 * 180.32069 * 14 13 10 16 16 C 1.38656 * 120.50676 * 359.66884 * 15 14 13 17 17 C 1.37597 * 120.24658 * 0.02562 * 16 15 14 18 18 C 1.40694 * 120.12453 * 65.76949 * 13 10 9 19 19 C 1.41389 * 120.24576 * 359.97438 * 18 13 10 20 20 H 1.08001 * 120.00446 * 332.03769 * 19 18 13 21 21 C 1.39954 * 119.99865 * 152.03854 * 19 18 13 22 22 N 1.30823 * 119.99915 * 337.50889 * 21 19 18 23 23 Si 1.86799 * 119.99776 * 157.51659 * 21 19 18 24 24 H 1.48506 * 109.46759 * 179.97438 * 23 21 19 25 25 H 1.48506 * 109.47152 * 299.99441 * 23 21 19 26 26 H 1.48497 * 109.47398 * 59.99800 * 23 21 19 27 27 H 1.09000 * 109.47371 * 59.99273 * 1 2 3 28 28 H 1.09001 * 109.47738 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46880 * 299.99924 * 1 2 3 30 30 H 1.09002 * 109.46587 * 239.99836 * 2 1 3 31 31 H 1.09003 * 109.46885 * 120.00613 * 2 1 3 32 32 H 1.09002 * 109.47035 * 62.65446 * 3 2 1 33 33 H 1.09002 * 109.47379 * 302.65893 * 3 2 1 34 34 H 1.09004 * 109.47270 * 305.00433 * 6 4 3 35 35 H 1.09007 * 109.46623 * 65.00216 * 6 4 3 36 36 H 1.08994 * 109.47066 * 300.00688 * 7 6 4 37 37 H 1.09007 * 109.46843 * 60.00442 * 7 6 4 38 38 H 0.96703 * 114.00086 * 180.02562 * 8 7 6 39 39 H 0.96998 * 120.00153 * 292.10151 * 9 4 3 40 40 H 1.07997 * 119.87756 * 0.02562 * 14 13 10 41 41 H 1.08000 * 119.74249 * 179.69182 * 15 14 13 42 42 H 1.08005 * 119.87733 * 180.02562 * 16 15 14 43 43 H 1.08004 * 120.12400 * 180.02562 * 17 16 15 44 44 H 0.97002 * 119.99778 * 354.43428 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5686 1.4429 -0.0668 5 1 3.8954 0.8403 -0.9142 6 6 4.0712 2.8778 -0.2375 7 6 5.5891 2.8672 -0.4292 8 8 6.0586 4.2075 -0.5880 9 7 4.1117 0.8793 1.1716 10 16 4.8966 -0.5786 1.1434 11 8 4.0650 -1.4679 0.4104 12 8 5.3209 -0.8318 2.4757 13 6 6.3608 -0.3644 0.1870 14 6 6.5034 -1.0206 -1.0146 15 6 7.6571 -0.8589 -1.7657 16 6 8.6765 -0.0311 -1.3206 17 6 8.5529 0.6396 -0.1256 18 6 7.3860 0.4831 0.6456 19 6 7.2476 1.1677 1.8749 20 1 6.2651 1.4242 2.2426 21 6 8.3840 1.5129 2.6153 22 7 9.5032 0.8589 2.4390 23 14 8.3024 2.9074 3.8555 24 1 9.6286 3.0719 4.5032 25 1 7.9307 4.1664 3.1611 26 1 7.2832 2.5923 4.8885 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7161 1.9423 0.9128 33 1 1.6383 1.9699 -0.8652 34 1 3.5979 3.3272 -1.1106 35 1 3.8212 3.4584 0.6505 36 1 6.0624 2.4178 0.4438 37 1 5.8391 2.2866 -1.3172 38 1 7.0148 4.2769 -0.7148 39 1 4.0117 1.3601 2.0080 40 1 5.7155 -1.6674 -1.3711 41 1 7.7626 -1.3815 -2.7049 42 1 9.5709 0.0878 -1.9143 43 1 9.3480 1.2843 0.2190 44 1 9.5254 0.0841 1.8558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601484512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:21 Heat of formation + Delta-G solvation = -137.696629 kcal Electronic energy + Delta-G solvation = -28092.302249 eV Core-core repulsion = 24328.107750 eV Total energy + Delta-G solvation = -3764.194499 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.17988 -37.67657 -36.32860 -35.84714 -34.91234 -34.19139 -33.22222 -30.41401 -30.31764 -29.56354 -27.60959 -25.50661 -23.40242 -21.92044 -21.28825 -20.83831 -20.79500 -18.89365 -18.39514 -16.96389 -16.88813 -16.18965 -15.80027 -15.03138 -14.98026 -14.68284 -14.36781 -14.17583 -13.83141 -13.69438 -13.40022 -13.22958 -13.03261 -12.67572 -12.46798 -12.29853 -11.77928 -11.70576 -11.38039 -11.31589 -11.30510 -11.21173 -11.08167 -11.07654 -10.99668 -10.61293 -10.57978 -10.53983 -10.41425 -10.38933 -9.90750 -9.59566 -9.47276 -9.22037 -8.88964 -8.30732 -7.87999 -7.53479 -4.93542 1.44133 2.13727 2.56706 3.04524 3.12869 3.22630 3.81652 3.83227 4.26582 4.42920 4.64789 5.01125 5.09967 5.17122 5.20319 5.35435 5.44174 5.50608 5.57430 5.66701 5.81809 5.85352 5.91723 5.97090 5.97846 6.05013 6.13504 6.16721 6.23175 6.25330 6.39266 6.52111 6.58863 6.63829 6.67394 6.78977 7.00998 7.18404 7.28545 7.41749 7.52967 7.56321 7.71494 7.86990 8.05204 8.24347 8.47232 9.71793 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.006089 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.591242 B = 4597.657015 C = 4979.789607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.126 4.126 4 C 0.164 3.836 5 H 0.087 0.913 6 C -0.124 4.124 7 C 0.052 3.948 8 O -0.582 6.582 9 N -1.116 6.116 10 S 2.697 3.303 11 O -0.991 6.991 12 O -0.966 6.966 13 C -0.782 4.782 14 C 0.013 3.987 15 C -0.263 4.263 16 C -0.053 4.053 17 C -0.215 4.215 18 C 0.168 3.832 19 C -0.495 4.495 20 H 0.088 0.912 21 C 0.044 3.956 22 N -0.772 5.772 23 Si 1.058 2.942 24 H -0.270 1.270 25 H -0.268 1.268 26 H -0.268 1.268 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.377 0.623 39 H 0.411 0.589 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 4.132 -3.772 9.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.166 4.166 4 C 0.056 3.944 5 H 0.105 0.895 6 C -0.163 4.163 7 C -0.025 4.025 8 O -0.387 6.387 9 N -0.872 5.872 10 S 2.794 3.206 11 O -0.982 6.982 12 O -0.957 6.957 13 C -0.877 4.877 14 C -0.006 4.006 15 C -0.284 4.284 16 C -0.072 4.072 17 C -0.235 4.235 18 C 0.163 3.837 19 C -0.522 4.522 20 H 0.105 0.895 21 C -0.181 4.181 22 N -0.393 5.393 23 Si 0.880 3.120 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.193 1.193 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.224 0.776 39 H 0.245 0.755 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.129 0.871 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.204 4.219 -2.379 9.527 hybrid contribution 0.343 -0.573 -1.425 1.573 sum -7.861 3.646 -3.803 9.463 Atomic orbital electron populations 1.21780 0.96526 1.01296 1.01150 1.21555 0.94846 0.96239 1.03660 1.21986 0.94588 0.97661 1.02326 1.20594 0.93122 0.94219 0.86488 0.89465 1.21839 0.95517 0.96253 1.02699 1.22701 0.94411 0.83013 1.02385 1.86295 1.27761 1.28391 1.96296 1.55811 1.73539 1.42621 1.15238 1.01227 0.73540 0.72084 0.73755 1.93470 1.67658 1.62414 1.74609 1.93550 1.82592 1.83257 1.36281 1.29898 1.22603 1.19936 1.15242 1.20341 0.95912 0.92970 0.91415 1.20460 0.96962 1.08865 1.02063 1.20842 0.96481 0.94671 0.95235 1.21337 1.00455 1.05353 0.96345 1.16942 0.89760 0.85833 0.91211 1.20872 0.97539 1.30884 1.02887 0.89458 1.27099 0.90941 1.00693 0.99342 1.70459 1.28222 1.13475 1.27182 0.83724 0.77948 0.74564 0.75763 1.19435 1.19259 1.19310 0.93135 0.92976 0.93167 0.91239 0.91460 0.91505 0.91229 0.91103 0.90956 0.89218 0.94262 0.77642 0.75512 0.87241 0.88558 0.88651 0.87085 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.70 4.88 -26.73 -0.13 -1.83 16 3 C -0.13 -1.54 4.88 -26.74 -0.13 -1.68 16 4 C 0.16 2.36 2.24 -67.93 -0.15 2.21 16 5 H 0.09 1.33 7.80 -51.93 -0.40 0.93 16 6 C -0.12 -1.78 5.26 -26.74 -0.14 -1.92 16 7 C 0.05 0.88 6.56 37.16 0.24 1.13 16 8 O -0.58 -9.70 13.66 -35.23 -0.48 -10.18 16 9 N -1.12 -18.29 3.61 -4.90 -0.02 -18.31 16 10 S 2.70 55.50 4.82 -107.50 -0.52 54.98 16 11 O -0.99 -20.79 14.70 -57.17 -0.84 -21.63 16 12 O -0.97 -23.30 16.49 -57.17 -0.94 -24.25 16 13 C -0.78 -17.21 5.82 -38.87 -0.23 -17.43 16 14 C 0.01 0.28 9.54 -39.66 -0.38 -0.10 16 15 C -0.26 -5.32 10.05 -39.29 -0.39 -5.72 16 16 C -0.05 -1.09 10.02 -39.66 -0.40 -1.49 16 17 C -0.22 -4.80 7.88 -38.87 -0.31 -5.10 16 18 C 0.17 3.85 3.78 -106.83 -0.40 3.44 16 19 C -0.50 -11.48 5.80 -37.74 -0.22 -11.70 16 20 H 0.09 1.93 5.49 -52.49 -0.29 1.64 16 21 C 0.04 1.03 5.00 -17.34 -0.09 0.94 16 22 N -0.77 -18.82 12.37 55.55 0.69 -18.14 16 23 Si 1.06 19.93 29.99 -169.99 -5.10 14.83 16 24 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.27 -4.74 7.11 56.52 0.40 -4.33 16 26 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 31 H 0.07 1.03 6.92 -51.93 -0.36 0.67 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.69 3.62 -51.93 -0.19 1.50 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.38 5.22 9.12 45.56 0.42 5.64 16 39 H 0.41 6.09 8.72 -34.47 -0.30 5.79 16 40 H 0.11 2.14 7.32 -52.49 -0.38 1.75 16 41 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.11 2.51 6.54 -52.48 -0.34 2.17 16 44 H 0.30 7.65 6.52 -40.82 -0.27 7.38 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -28.72 359.98 -9.70 -38.42 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -5.56 Total: 19.38 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: -2.35 Total: -40.53 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.67 Total: -36.45 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -2.26 Total: -56.05 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.10 Total: 14.83 kcal Atomic # 16 Polarization: 55.50 SS G_CDS: -0.52 Total: 54.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.72 -9.70 -38.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601484512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.278 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds