Wall clock time and date at job start Tue Mar 31 2020 15:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 C 1.53003 * 109.46950 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.46833 * 179.97438 * 4 3 2 6 6 C 1.42899 * 113.99609 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46690 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47506 * 64.99620 * 7 6 5 9 9 S 1.65603 * 120.00269 * 164.99575 * 8 7 6 10 10 O 1.42101 * 106.40420 * 311.46503 * 9 8 7 11 11 O 1.42093 * 106.40486 * 178.54249 * 9 8 7 12 12 C 1.76202 * 107.21304 * 65.00274 * 9 8 7 13 13 C 1.38656 * 119.87802 * 270.24806 * 12 9 8 14 14 C 1.38611 * 120.50290 * 180.30014 * 13 12 9 15 15 C 1.37646 * 120.24720 * 359.45638 * 14 13 12 16 16 C 1.40700 * 119.74049 * 0.26612 * 15 14 13 17 17 C 1.41394 * 120.23887 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99918 * 204.39256 * 17 16 15 19 19 C 1.39939 * 120.00458 * 24.38628 * 17 16 15 20 20 N 1.30826 * 119.99815 * 17.86380 * 19 17 16 21 21 Si 1.86807 * 120.00442 * 197.86044 * 19 17 16 22 22 H 1.48504 * 109.46582 * 94.69503 * 21 19 17 23 23 H 1.48499 * 109.47234 * 214.69507 * 21 19 17 24 24 H 1.48502 * 109.46792 * 334.69880 * 21 19 17 25 25 C 1.37595 * 119.87364 * 90.00510 * 12 9 8 26 26 H 1.08994 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46543 * 300.00528 * 1 2 3 28 28 H 1.09005 * 109.46921 * 59.99877 * 1 2 3 29 29 H 1.09006 * 109.46674 * 239.99705 * 2 1 3 30 30 H 1.09000 * 109.47310 * 120.00363 * 2 1 3 31 31 H 1.08993 * 109.47275 * 59.99866 * 3 2 1 32 32 H 1.08997 * 109.47009 * 299.99709 * 3 2 1 33 33 H 1.08999 * 109.47119 * 60.00531 * 4 3 2 34 34 H 1.08992 * 109.47404 * 299.99931 * 4 3 2 35 35 H 1.08993 * 109.47397 * 60.00627 * 6 5 4 36 36 H 1.08996 * 109.47156 * 299.99785 * 6 5 4 37 37 H 1.08996 * 109.47119 * 304.99676 * 7 6 5 38 38 H 1.09000 * 109.47134 * 185.00269 * 7 6 5 39 39 H 0.97003 * 120.00209 * 345.00253 * 8 7 6 40 40 H 1.08005 * 119.75084 * 0.05438 * 13 12 9 41 41 H 1.07994 * 119.87907 * 179.72408 * 14 13 12 42 42 H 1.07991 * 120.12819 * 180.25140 * 15 14 13 43 43 H 0.97002 * 120.00124 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.13108 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 8 4.0466 2.7896 -0.0012 6 6 5.4711 2.9023 -0.0025 7 6 5.8657 4.3805 -0.0024 8 7 5.4287 5.0026 1.2499 9 16 6.0319 6.4790 1.6957 10 8 7.4430 6.3968 1.5493 11 8 5.3962 6.8192 2.9202 12 6 5.4754 7.6512 0.5037 13 6 6.2393 7.9038 -0.6255 14 6 5.8169 8.8278 -1.5685 15 6 4.6264 9.4974 -1.3982 16 6 3.8403 9.2449 -0.2590 17 6 2.6158 9.9272 -0.0733 18 1 2.2125 10.0519 0.9208 19 6 1.9266 10.4410 -1.1775 20 7 2.2039 10.0087 -2.3807 21 14 0.6104 11.7440 -0.9334 22 1 1.2074 13.0911 -1.1186 23 1 -0.4754 11.5429 -1.9263 24 1 0.0532 11.6338 0.4387 25 6 4.2819 8.3089 0.6945 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6769 1.9563 -0.8900 33 1 3.9331 0.9287 -0.8909 34 1 3.9338 0.9284 0.8890 35 1 5.8731 2.4187 -0.8927 36 1 5.8745 2.4189 0.8872 37 1 5.3892 4.8838 -0.8436 38 1 6.9484 4.4676 -0.0929 39 1 4.7860 4.5497 1.8181 40 1 7.1725 7.3795 -0.7696 41 1 6.4220 9.0200 -2.4421 42 1 4.2972 10.2140 -2.1361 43 1 1.7259 10.3646 -3.1461 44 1 3.6864 8.1075 1.5727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619479256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:17 Heat of formation + Delta-G solvation = -127.194191 kcal Electronic energy + Delta-G solvation = -25381.590427 eV Core-core repulsion = 21617.851348 eV Total energy + Delta-G solvation = -3763.739079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.43241 -37.60540 -36.63759 -35.64198 -35.26540 -34.43175 -33.81739 -30.04864 -29.84852 -29.75140 -28.04934 -25.46301 -23.54154 -22.60261 -21.84973 -21.24805 -20.94330 -19.09596 -17.97420 -17.00218 -16.76261 -16.57562 -15.93722 -15.87772 -15.17900 -14.95588 -14.82706 -14.62517 -14.18003 -13.79053 -13.43655 -13.33346 -13.09311 -12.91764 -12.58822 -12.54816 -11.99727 -11.87951 -11.59680 -11.57826 -11.50125 -11.36670 -11.35942 -11.35441 -11.11144 -11.00034 -10.96853 -10.86923 -10.84854 -10.57924 -9.76651 -9.72426 -9.62965 -9.33505 -9.10125 -8.00600 -7.67651 -6.90314 -4.50745 1.08388 2.23151 2.65716 3.01713 3.06470 3.08486 3.43844 3.65526 3.85092 4.28309 4.46522 4.67684 4.69700 4.84587 4.93710 4.96510 5.05157 5.15673 5.20464 5.27250 5.37593 5.43573 5.50461 5.58519 5.60601 5.67655 5.83354 5.90119 6.01036 6.05537 6.09856 6.12968 6.20382 6.68883 6.79160 6.88285 7.05923 7.09344 7.23999 7.31324 7.41754 7.75395 7.84080 7.97342 8.43329 8.69691 8.74804 10.05183 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008619 B = 0.003665 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.946696 B = 7638.796070 C = 9834.403156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.062 3.938 5 O -0.382 6.382 6 C 0.057 3.943 7 C 0.122 3.878 8 N -1.117 6.117 9 S 2.691 3.309 10 O -0.978 6.978 11 O -0.973 6.973 12 C -0.631 4.631 13 C -0.150 4.150 14 C -0.121 4.121 15 C -0.120 4.120 16 C 0.091 3.909 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.417 0.583 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 -15.891 0.387 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.160 4.160 4 C -0.015 4.015 5 O -0.301 6.301 6 C -0.021 4.021 7 C -0.004 4.004 8 N -0.876 5.876 9 S 2.786 3.214 10 O -0.968 6.968 11 O -0.964 6.964 12 C -0.723 4.723 13 C -0.172 4.172 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.736 3.264 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.251 0.749 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.102 -15.499 0.766 15.557 hybrid contribution -1.142 0.394 -0.563 1.333 sum -0.040 -15.105 0.203 15.107 Atomic orbital electron populations 1.21759 0.95400 1.01584 1.02264 1.21435 0.96310 0.96121 1.01973 1.21572 0.93472 0.97097 1.03846 1.22510 0.95245 0.83870 0.99863 1.87971 1.20701 1.26053 1.95374 1.22694 0.81905 0.96587 1.00898 1.21285 0.99998 0.92225 0.86920 1.55447 1.61365 1.38155 1.32594 1.01583 0.73361 0.72589 0.73831 1.93503 1.29680 1.86440 1.87151 1.93534 1.77099 1.82966 1.42770 1.29737 1.07226 1.19823 1.15516 1.20071 0.99132 1.03250 0.94712 1.20802 0.97070 0.98189 0.97948 1.21634 0.92733 0.99920 0.99646 1.17689 0.92629 0.89839 0.91072 1.19639 1.04172 1.30538 0.94586 0.89891 1.25930 0.97967 0.95855 0.94534 1.69788 1.37263 1.35043 0.99819 0.86234 0.79742 0.80869 0.79572 1.19243 1.20191 1.18371 1.20783 0.94682 0.97992 1.00780 0.92741 0.92497 0.92502 0.91983 0.91981 0.90894 0.90885 0.93516 0.93530 0.91982 0.92566 0.90329 0.89018 0.74933 0.87643 0.88427 0.85766 0.90636 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -1.15 5.58 -26.73 -0.15 -1.30 16 4 C 0.06 0.59 5.94 37.16 0.22 0.81 16 5 O -0.38 -4.79 10.14 -35.23 -0.36 -5.15 16 6 C 0.06 0.61 6.13 37.16 0.23 0.84 16 7 C 0.12 1.61 6.61 -4.04 -0.03 1.58 16 8 N -1.12 -16.85 5.96 -10.62 -0.06 -16.91 16 9 S 2.69 51.02 5.73 -107.50 -0.62 50.41 16 10 O -0.98 -19.76 16.75 -57.17 -0.96 -20.72 16 11 O -0.97 -20.79 17.26 -57.17 -0.99 -21.78 16 12 C -0.63 -13.94 5.94 -39.66 -0.24 -14.18 16 13 C -0.15 -3.27 9.53 -39.29 -0.37 -3.64 16 14 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 15 C -0.12 -3.00 8.70 -38.87 -0.34 -3.34 16 16 C 0.09 2.39 5.58 -106.82 -0.60 1.79 16 17 C -0.46 -11.96 9.05 -37.75 -0.34 -12.31 16 18 H 0.08 2.09 7.91 -52.48 -0.41 1.67 16 19 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.79 -19.78 10.95 55.55 0.61 -19.17 16 21 Si 0.91 18.25 29.60 -169.99 -5.03 13.22 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.09 7.75 -51.93 -0.40 0.69 16 39 H 0.42 5.68 8.51 -34.47 -0.29 5.38 16 40 H 0.11 2.03 7.61 -52.48 -0.40 1.63 16 41 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.12 3.17 6.15 -52.49 -0.32 2.84 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.11 2.63 7.60 -52.49 -0.40 2.23 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -31.11 380.64 -10.78 -41.89 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.86 Total: 8.71 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: -2.25 Total: -36.23 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.55 Total: -36.08 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.30 Total: -47.65 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.62 Total: 50.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.11 -10.78 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619479256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.306 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds