Wall clock time and date at job start Tue Mar 31 2020 15:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 C 1.53003 * 109.46950 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.46833 * 179.97438 * 4 3 2 6 6 C 1.42899 * 113.99609 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46690 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47506 * 64.99620 * 7 6 5 9 9 S 1.65603 * 120.00269 * 164.99575 * 8 7 6 10 10 O 1.42101 * 106.40420 * 311.46503 * 9 8 7 11 11 O 1.42093 * 106.40486 * 178.54249 * 9 8 7 12 12 C 1.76202 * 107.21304 * 65.00274 * 9 8 7 13 13 C 1.38656 * 119.87802 * 270.24806 * 12 9 8 14 14 C 1.38611 * 120.50290 * 180.30014 * 13 12 9 15 15 C 1.37646 * 120.24720 * 359.45638 * 14 13 12 16 16 C 1.40700 * 119.74049 * 0.26612 * 15 14 13 17 17 C 1.41394 * 120.23887 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99918 * 204.39256 * 17 16 15 19 19 C 1.39939 * 120.00458 * 24.38628 * 17 16 15 20 20 N 1.30826 * 119.99815 * 17.86380 * 19 17 16 21 21 Si 1.86807 * 120.00442 * 197.86044 * 19 17 16 22 22 H 1.48504 * 109.46582 * 94.69503 * 21 19 17 23 23 H 1.48499 * 109.47234 * 214.69507 * 21 19 17 24 24 H 1.48502 * 109.46792 * 334.69880 * 21 19 17 25 25 C 1.37595 * 119.87364 * 90.00510 * 12 9 8 26 26 H 1.08994 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46543 * 300.00528 * 1 2 3 28 28 H 1.09005 * 109.46921 * 59.99877 * 1 2 3 29 29 H 1.09006 * 109.46674 * 239.99705 * 2 1 3 30 30 H 1.09000 * 109.47310 * 120.00363 * 2 1 3 31 31 H 1.08993 * 109.47275 * 59.99866 * 3 2 1 32 32 H 1.08997 * 109.47009 * 299.99709 * 3 2 1 33 33 H 1.08999 * 109.47119 * 60.00531 * 4 3 2 34 34 H 1.08992 * 109.47404 * 299.99931 * 4 3 2 35 35 H 1.08993 * 109.47397 * 60.00627 * 6 5 4 36 36 H 1.08996 * 109.47156 * 299.99785 * 6 5 4 37 37 H 1.08996 * 109.47119 * 304.99676 * 7 6 5 38 38 H 1.09000 * 109.47134 * 185.00269 * 7 6 5 39 39 H 0.97003 * 120.00209 * 345.00253 * 8 7 6 40 40 H 1.08005 * 119.75084 * 0.05438 * 13 12 9 41 41 H 1.07994 * 119.87907 * 179.72408 * 14 13 12 42 42 H 1.07991 * 120.12819 * 180.25140 * 15 14 13 43 43 H 0.97002 * 120.00124 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.13108 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 8 4.0466 2.7896 -0.0012 6 6 5.4711 2.9023 -0.0025 7 6 5.8657 4.3805 -0.0024 8 7 5.4287 5.0026 1.2499 9 16 6.0319 6.4790 1.6957 10 8 7.4430 6.3968 1.5493 11 8 5.3962 6.8192 2.9202 12 6 5.4754 7.6512 0.5037 13 6 6.2393 7.9038 -0.6255 14 6 5.8169 8.8278 -1.5685 15 6 4.6264 9.4974 -1.3982 16 6 3.8403 9.2449 -0.2590 17 6 2.6158 9.9272 -0.0733 18 1 2.2125 10.0519 0.9208 19 6 1.9266 10.4410 -1.1775 20 7 2.2039 10.0087 -2.3807 21 14 0.6104 11.7440 -0.9334 22 1 1.2074 13.0911 -1.1186 23 1 -0.4754 11.5429 -1.9263 24 1 0.0532 11.6338 0.4387 25 6 4.2819 8.3089 0.6945 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6769 1.9563 -0.8900 33 1 3.9331 0.9287 -0.8909 34 1 3.9338 0.9284 0.8890 35 1 5.8731 2.4187 -0.8927 36 1 5.8745 2.4189 0.8872 37 1 5.3892 4.8838 -0.8436 38 1 6.9484 4.4676 -0.0929 39 1 4.7860 4.5497 1.8181 40 1 7.1725 7.3795 -0.7696 41 1 6.4220 9.0200 -2.4421 42 1 4.2972 10.2140 -2.1361 43 1 1.7259 10.3646 -3.1461 44 1 3.6864 8.1075 1.5727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619479256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:16 Heat of formation + Delta-G solvation = -147.568753 kcal Electronic energy + Delta-G solvation = -25382.473934 eV Core-core repulsion = 21617.851348 eV Total energy + Delta-G solvation = -3764.622587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.44241 -39.27700 -38.25275 -36.90268 -36.53764 -35.66951 -35.35072 -31.90984 -31.57686 -30.64888 -28.95142 -27.34724 -24.23642 -23.70021 -23.50750 -22.77656 -21.91643 -20.63477 -19.65884 -18.49831 -17.78551 -17.58742 -17.53985 -17.00246 -16.79178 -16.52860 -16.03635 -15.76250 -15.32098 -15.09653 -15.02107 -14.60308 -14.30513 -13.94198 -13.89122 -13.68817 -13.38615 -13.30944 -13.16480 -13.07457 -13.04150 -13.00547 -12.80071 -12.60053 -12.30888 -12.22115 -12.18254 -11.85783 -11.80850 -11.54933 -11.51119 -11.35133 -11.15135 -10.51814 -10.43335 -9.83976 -9.55711 -8.73391 -6.45364 -0.46390 0.41649 0.84738 1.36553 1.45656 1.50132 2.14439 2.17453 2.55445 2.69996 2.80780 3.47405 3.53869 3.89951 4.01310 4.12764 4.21274 4.25402 4.32348 4.43198 4.45345 4.49433 4.51494 4.58627 4.71743 4.78994 4.84909 4.90847 4.92547 4.96694 5.02892 5.06192 5.09130 5.20720 5.25042 5.35971 5.41767 5.45273 5.57188 5.88991 5.94214 6.09761 6.12504 6.33227 6.52793 6.79596 6.84990 8.24651 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008619 B = 0.003665 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.946696 B = 7638.796070 C = 9834.403156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.123 4.123 4 C 0.058 3.942 5 O -0.413 6.413 6 C 0.058 3.942 7 C 0.111 3.889 8 N -1.103 6.103 9 S 2.723 3.277 10 O -0.983 6.983 11 O -0.998 6.998 12 C -0.639 4.639 13 C -0.147 4.147 14 C -0.123 4.123 15 C -0.142 4.142 16 C 0.061 3.939 17 C -0.500 4.500 18 H 0.076 0.924 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.260 1.260 25 C -0.146 4.146 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.425 0.575 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -17.489 0.044 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.161 4.161 4 C -0.018 4.018 5 O -0.333 6.333 6 C -0.019 4.019 7 C -0.015 4.015 8 N -0.866 5.866 9 S 2.815 3.185 10 O -0.973 6.973 11 O -0.988 6.988 12 C -0.728 4.728 13 C -0.167 4.167 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.058 3.942 17 C -0.529 4.529 18 H 0.095 0.905 19 C -0.178 4.178 20 N -0.447 5.447 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.189 1.189 24 H -0.184 1.184 25 C -0.167 4.167 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.261 0.739 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.848 -17.086 0.399 17.191 hybrid contribution -1.277 0.750 -0.473 1.554 sum 0.571 -16.336 -0.074 16.346 Atomic orbital electron populations 1.21783 0.95489 1.02223 1.01738 1.21409 0.96216 0.94773 1.02910 1.21590 0.93882 0.98228 1.02413 1.22658 0.94961 0.82873 1.01266 1.87932 1.21805 1.27909 1.95673 1.22769 0.81332 0.94808 1.03034 1.21588 1.00981 0.93814 0.85130 1.55146 1.61487 1.36335 1.33622 1.00686 0.72836 0.72545 0.72435 1.93491 1.30041 1.86726 1.87009 1.93495 1.77563 1.83840 1.43936 1.30284 1.06110 1.20077 1.16308 1.20501 0.99832 1.02447 0.93965 1.21164 0.96380 0.97491 0.99132 1.21653 0.94058 1.00978 0.99535 1.18051 0.93333 0.90663 0.92135 1.19863 1.05177 1.32787 0.95070 0.90539 1.26733 0.99915 0.97266 0.93837 1.69816 1.38380 1.35863 1.00592 0.85171 0.77023 0.77912 0.79520 1.18534 1.18893 1.18422 1.20843 0.96155 0.98879 1.00842 0.91502 0.93005 0.93112 0.91038 0.90956 0.92213 0.92475 0.92062 0.92006 0.89385 0.90751 0.91714 0.87286 0.73884 0.84582 0.85363 0.86885 0.89735 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.12 -1.53 5.93 30.60 0.18 -1.35 16 3 C -0.12 -2.24 5.58 30.59 0.17 -2.07 16 4 C 0.06 1.01 5.94 71.98 0.43 1.44 16 5 O -0.41 -9.72 10.14 -148.98 -1.51 -11.23 16 6 C 0.06 1.08 6.13 71.98 0.44 1.52 16 7 C 0.11 2.66 6.61 86.38 0.57 3.23 16 8 N -1.10 -31.63 5.96 -187.50 -1.12 -32.75 16 9 S 2.72 100.39 5.73 -56.49 -0.32 100.06 16 10 O -0.98 -37.57 16.75 -128.00 -2.14 -39.71 16 11 O -1.00 -42.39 17.26 -128.00 -2.21 -44.60 16 12 C -0.64 -28.18 5.94 22.22 0.13 -28.04 16 13 C -0.15 -6.19 9.53 22.46 0.21 -5.98 16 14 C -0.12 -5.47 10.02 22.22 0.22 -5.24 16 15 C -0.14 -7.34 8.70 22.73 0.20 -7.15 16 16 C 0.06 3.34 5.58 -21.29 -0.12 3.22 16 17 C -0.50 -27.14 9.05 23.46 0.21 -26.93 16 18 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 19 C 0.04 1.90 5.14 85.25 0.44 2.33 16 20 N -0.82 -41.77 10.95 21.82 0.24 -41.54 16 21 Si 0.98 37.86 29.60 68.60 2.03 39.89 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 C -0.15 -7.39 9.26 22.73 0.21 -7.18 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 29 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 2.26 7.75 -2.39 -0.02 2.24 16 39 H 0.43 11.01 8.51 -96.74 -0.82 10.19 16 40 H 0.14 4.85 7.61 -2.91 -0.02 4.83 16 41 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.11 5.97 6.15 -2.92 -0.02 5.95 16 43 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 44 H 0.11 5.30 7.60 -2.91 -0.02 5.28 16 Total: -1.00 -67.98 380.64 -0.86 -68.84 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.17 Total: 34.60 kcal Atomic # 6 Polarization: -77.59 SS G_CDS: 4.01 Total: -73.58 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -0.88 Total: -74.28 kcal Atomic # 8 Polarization: -89.67 SS G_CDS: -5.86 Total: -95.54 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Atomic # 16 Polarization: 100.39 SS G_CDS: -0.32 Total: 100.06 kcal Total: -67.98 -0.86 -68.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619479256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.730 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds