Wall clock time and date at job start Tue Mar 31 2020 15:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47148 * 2 1 4 4 C 1.53008 * 109.47015 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46979 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00015 * 275.00060 * 5 4 3 7 7 C 1.52997 * 109.46568 * 274.99800 * 6 5 4 8 8 O 1.42904 * 109.47296 * 65.00100 * 7 6 5 9 9 S 1.65603 * 119.99981 * 94.99397 * 5 4 3 10 10 O 1.42101 * 106.40420 * 336.46207 * 9 5 4 11 11 O 1.42093 * 106.40486 * 203.53953 * 9 5 4 12 12 C 1.76202 * 107.21304 * 89.99978 * 9 5 4 13 13 C 1.38656 * 119.87802 * 270.24806 * 12 9 5 14 14 C 1.38611 * 120.50290 * 180.30014 * 13 12 9 15 15 C 1.37646 * 120.24720 * 359.45638 * 14 13 12 16 16 C 1.40700 * 119.74049 * 0.26612 * 15 14 13 17 17 C 1.41394 * 120.23887 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99918 * 204.39256 * 17 16 15 19 19 C 1.39939 * 120.00458 * 24.38628 * 17 16 15 20 20 N 1.30826 * 119.99815 * 17.86380 * 19 17 16 21 21 Si 1.86807 * 120.00442 * 197.86044 * 19 17 16 22 22 H 1.48504 * 109.46582 * 94.69503 * 21 19 17 23 23 H 1.48499 * 109.47234 * 214.69507 * 21 19 17 24 24 H 1.48502 * 109.46792 * 334.69880 * 21 19 17 25 25 C 1.37595 * 119.87364 * 90.00510 * 12 9 5 26 26 H 1.08994 * 109.46758 * 60.00290 * 1 2 3 27 27 H 1.08998 * 109.46785 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46713 * 299.99870 * 1 2 3 29 29 H 1.09004 * 109.46778 * 239.99586 * 2 1 3 30 30 H 1.09005 * 109.47204 * 119.99931 * 2 1 3 31 31 H 1.08994 * 109.47635 * 59.99956 * 3 2 1 32 32 H 1.09005 * 109.47012 * 300.00049 * 3 2 1 33 33 H 1.08992 * 109.47191 * 59.99899 * 4 3 2 34 34 H 1.08994 * 109.46524 * 299.99485 * 4 3 2 35 35 H 1.08997 * 109.47059 * 34.99975 * 6 5 4 36 36 H 1.09002 * 109.46908 * 155.00378 * 6 5 4 37 37 H 1.09002 * 109.46896 * 184.99966 * 7 6 5 38 38 H 1.09006 * 109.47498 * 304.99833 * 7 6 5 39 39 H 0.96695 * 114.00039 * 179.97438 * 8 7 6 40 40 H 1.08005 * 119.75084 * 0.05438 * 13 12 9 41 41 H 1.07994 * 119.87907 * 179.72408 * 14 13 12 42 42 H 1.07991 * 120.12819 * 180.25140 * 15 14 13 43 43 H 0.97002 * 120.00124 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.13108 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.1978 3.5507 -1.2655 7 6 5.5545 3.2258 -1.8937 8 8 5.5966 1.8417 -2.2469 9 16 4.4528 3.5631 1.4271 10 8 3.7278 2.8847 2.4437 11 8 4.3462 4.9614 1.1979 12 6 6.1577 3.2370 1.7298 13 6 6.5288 2.1075 2.4433 14 6 7.8658 1.8416 2.6942 15 6 8.8416 2.6925 2.2268 16 6 8.4769 3.8387 1.4967 17 6 9.4705 4.7202 1.0121 18 1 9.2257 5.7532 0.8137 19 6 10.7712 4.2543 0.7895 20 7 10.9973 2.9698 0.6869 21 14 12.1847 5.4664 0.6390 22 1 12.8415 5.6273 1.9611 23 1 13.1721 4.9555 -0.3455 24 1 11.6638 6.7798 0.1819 25 6 7.1160 4.1015 1.2529 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9331 0.9287 -0.8908 34 1 3.9337 0.9285 0.8891 35 1 3.4010 3.2516 -1.9464 36 1 4.1319 4.6224 -1.0774 37 1 5.6959 3.8333 -2.7875 38 1 6.3476 3.4424 -1.1780 39 1 6.4297 1.5644 -2.6520 40 1 5.7701 1.4318 2.8098 41 1 8.1433 0.9613 3.2549 42 1 9.8829 2.4814 2.4200 43 1 11.8988 2.6468 0.5323 44 1 6.8251 4.9784 0.6937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619485486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:59 Heat of formation + Delta-G solvation = -124.327486 kcal Electronic energy + Delta-G solvation = -26859.218426 eV Core-core repulsion = 23095.603656 eV Total energy + Delta-G solvation = -3763.614770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -37.75115 -37.59065 -36.79329 -35.88592 -35.27033 -34.01594 -33.86913 -30.13051 -29.94512 -29.76176 -27.45900 -25.50624 -23.46234 -22.30590 -21.69655 -21.04946 -20.93628 -18.59643 -17.95782 -17.38917 -16.65021 -16.18581 -15.88400 -15.31189 -15.20493 -14.77418 -14.67936 -14.21506 -13.79678 -13.49562 -13.36791 -13.32788 -13.06672 -12.61778 -12.55906 -12.37930 -11.92634 -11.83453 -11.60154 -11.58150 -11.42475 -11.40842 -11.24599 -11.19868 -11.01147 -10.95356 -10.91888 -10.83285 -10.62884 -10.40388 -9.80795 -9.70882 -9.59094 -9.38521 -8.70736 -8.02074 -7.72353 -6.95829 -4.56749 1.01422 2.19084 2.60568 2.97366 3.01609 3.04204 3.48464 3.79835 4.27027 4.39863 4.45797 4.83397 4.90899 5.00654 5.08305 5.17047 5.34102 5.37968 5.45680 5.55462 5.64093 5.72987 5.76582 5.82523 5.90011 6.01082 6.05358 6.11089 6.15704 6.16761 6.20535 6.44563 6.48257 6.61899 6.73301 6.77645 6.95555 7.03615 7.20302 7.36980 7.71531 7.78363 7.83547 7.91969 8.37858 8.64392 8.69465 9.99442 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.003755 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.106488 B = 7454.461537 C = 7730.358136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.128 3.872 5 N -0.991 5.991 6 C 0.120 3.880 7 C 0.048 3.952 8 O -0.568 6.568 9 S 2.682 3.318 10 O -0.971 6.971 11 O -0.974 6.974 12 C -0.630 4.630 13 C -0.144 4.144 14 C -0.121 4.121 15 C -0.118 4.118 16 C 0.093 3.907 17 C -0.462 4.462 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.129 4.129 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.377 0.623 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -3.913 -5.651 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.003 3.997 5 N -0.827 5.827 6 C -0.005 4.005 7 C -0.031 4.031 8 O -0.374 6.374 9 S 2.779 3.221 10 O -0.961 6.961 11 O -0.964 6.964 12 C -0.721 4.721 13 C -0.165 4.165 14 C -0.140 4.140 15 C -0.137 4.137 16 C 0.089 3.911 17 C -0.491 4.491 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.150 4.150 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.224 0.776 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.667 -3.569 -4.963 12.294 hybrid contribution 2.162 0.136 -0.498 2.223 sum -8.505 -3.432 -5.460 10.673 Atomic orbital electron populations 1.21763 0.96047 1.01296 1.01744 1.21444 0.95690 0.96670 1.02209 1.22077 0.96301 0.97090 1.02497 1.21289 0.92985 0.81484 1.03948 1.57436 1.80035 1.23727 1.21458 1.21413 0.96831 0.97043 0.85261 1.22832 0.98718 0.82712 0.98847 1.86390 1.41579 1.25671 1.83743 1.01925 0.74984 0.72926 0.72239 1.93505 1.71594 1.75488 1.55550 1.93499 1.87408 1.30368 1.85153 1.29837 1.21690 1.06260 1.14341 1.20073 0.96121 0.96669 1.03606 1.20813 0.93152 0.99097 1.00955 1.21641 0.98925 0.95988 0.97180 1.17667 0.91235 0.92357 0.89824 1.19622 0.93250 0.97559 1.38697 0.89945 1.25921 1.00337 0.95691 0.92273 1.69783 1.23375 1.14551 1.34254 0.86254 0.79987 0.81275 0.79024 1.19215 1.20197 1.18388 1.20716 0.93046 0.98701 1.02528 0.92945 0.92959 0.92719 0.91914 0.91697 0.91421 0.91882 0.89081 0.90488 0.89821 0.87834 0.93077 0.91838 0.77636 0.87728 0.88417 0.85771 0.90617 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.28 5.93 -26.73 -0.16 -1.44 16 3 C -0.14 -1.75 5.54 -26.73 -0.15 -1.89 16 4 C 0.13 1.82 5.18 -4.04 -0.02 1.80 16 5 N -0.99 -15.65 2.77 -114.38 -0.32 -15.97 16 6 C 0.12 1.66 6.13 -4.04 -0.02 1.63 16 7 C 0.05 0.68 7.39 37.16 0.27 0.95 16 8 O -0.57 -7.75 11.98 -35.23 -0.42 -8.17 16 9 S 2.68 52.09 5.64 -107.50 -0.61 51.48 16 10 O -0.97 -20.17 16.25 -57.17 -0.93 -21.10 16 11 O -0.97 -20.50 15.82 -57.17 -0.90 -21.41 16 12 C -0.63 -13.82 5.96 -39.66 -0.24 -14.06 16 13 C -0.14 -3.15 9.53 -39.29 -0.37 -3.52 16 14 C -0.12 -2.71 10.02 -39.66 -0.40 -3.11 16 15 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 16 C 0.09 2.34 5.58 -106.82 -0.60 1.75 16 17 C -0.46 -11.57 9.05 -37.75 -0.34 -11.91 16 18 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 19 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 20 N -0.79 -19.15 10.95 55.55 0.61 -18.54 16 21 Si 0.91 17.72 29.60 -169.99 -5.03 12.68 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 25 C -0.13 -3.02 8.11 -38.87 -0.32 -3.34 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.24 6.60 -51.93 -0.34 0.89 16 34 H 0.08 1.14 7.61 -51.93 -0.40 0.75 16 35 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.10 1.40 6.91 -51.93 -0.36 1.04 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.07 6.95 -51.93 -0.36 0.71 16 39 H 0.38 4.02 9.12 45.56 0.42 4.43 16 40 H 0.10 2.09 7.61 -52.48 -0.40 1.69 16 41 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 43 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 44 H 0.11 2.45 7.60 -52.49 -0.40 2.05 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -29.66 372.56 -10.32 -39.98 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.94 Total: 11.14 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: -2.40 Total: -35.71 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.29 Total: -34.51 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -2.26 Total: -50.68 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 52.09 SS G_CDS: -0.61 Total: 51.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.66 -10.32 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.348 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds