Wall clock time and date at job start Tue Mar 31 2020 15:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47148 * 2 1 4 4 C 1.53008 * 109.47015 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46979 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00015 * 275.00060 * 5 4 3 7 7 C 1.52997 * 109.46568 * 274.99800 * 6 5 4 8 8 O 1.42904 * 109.47296 * 65.00100 * 7 6 5 9 9 S 1.65603 * 119.99981 * 94.99397 * 5 4 3 10 10 O 1.42101 * 106.40420 * 336.46207 * 9 5 4 11 11 O 1.42093 * 106.40486 * 203.53953 * 9 5 4 12 12 C 1.76202 * 107.21304 * 89.99978 * 9 5 4 13 13 C 1.38656 * 119.87802 * 270.24806 * 12 9 5 14 14 C 1.38611 * 120.50290 * 180.30014 * 13 12 9 15 15 C 1.37646 * 120.24720 * 359.45638 * 14 13 12 16 16 C 1.40700 * 119.74049 * 0.26612 * 15 14 13 17 17 C 1.41394 * 120.23887 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99918 * 204.39256 * 17 16 15 19 19 C 1.39939 * 120.00458 * 24.38628 * 17 16 15 20 20 N 1.30826 * 119.99815 * 17.86380 * 19 17 16 21 21 Si 1.86807 * 120.00442 * 197.86044 * 19 17 16 22 22 H 1.48504 * 109.46582 * 94.69503 * 21 19 17 23 23 H 1.48499 * 109.47234 * 214.69507 * 21 19 17 24 24 H 1.48502 * 109.46792 * 334.69880 * 21 19 17 25 25 C 1.37595 * 119.87364 * 90.00510 * 12 9 5 26 26 H 1.08994 * 109.46758 * 60.00290 * 1 2 3 27 27 H 1.08998 * 109.46785 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46713 * 299.99870 * 1 2 3 29 29 H 1.09004 * 109.46778 * 239.99586 * 2 1 3 30 30 H 1.09005 * 109.47204 * 119.99931 * 2 1 3 31 31 H 1.08994 * 109.47635 * 59.99956 * 3 2 1 32 32 H 1.09005 * 109.47012 * 300.00049 * 3 2 1 33 33 H 1.08992 * 109.47191 * 59.99899 * 4 3 2 34 34 H 1.08994 * 109.46524 * 299.99485 * 4 3 2 35 35 H 1.08997 * 109.47059 * 34.99975 * 6 5 4 36 36 H 1.09002 * 109.46908 * 155.00378 * 6 5 4 37 37 H 1.09002 * 109.46896 * 184.99966 * 7 6 5 38 38 H 1.09006 * 109.47498 * 304.99833 * 7 6 5 39 39 H 0.96695 * 114.00039 * 179.97438 * 8 7 6 40 40 H 1.08005 * 119.75084 * 0.05438 * 13 12 9 41 41 H 1.07994 * 119.87907 * 179.72408 * 14 13 12 42 42 H 1.07991 * 120.12819 * 180.25140 * 15 14 13 43 43 H 0.97002 * 120.00124 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.13108 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.1978 3.5507 -1.2655 7 6 5.5545 3.2258 -1.8937 8 8 5.5966 1.8417 -2.2469 9 16 4.4528 3.5631 1.4271 10 8 3.7278 2.8847 2.4437 11 8 4.3462 4.9614 1.1979 12 6 6.1577 3.2370 1.7298 13 6 6.5288 2.1075 2.4433 14 6 7.8658 1.8416 2.6942 15 6 8.8416 2.6925 2.2268 16 6 8.4769 3.8387 1.4967 17 6 9.4705 4.7202 1.0121 18 1 9.2257 5.7532 0.8137 19 6 10.7712 4.2543 0.7895 20 7 10.9973 2.9698 0.6869 21 14 12.1847 5.4664 0.6390 22 1 12.8415 5.6273 1.9611 23 1 13.1721 4.9555 -0.3455 24 1 11.6638 6.7798 0.1819 25 6 7.1160 4.1015 1.2529 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9331 0.9287 -0.8908 34 1 3.9337 0.9285 0.8891 35 1 3.4010 3.2516 -1.9464 36 1 4.1319 4.6224 -1.0774 37 1 5.6959 3.8333 -2.7875 38 1 6.3476 3.4424 -1.1780 39 1 6.4297 1.5644 -2.6520 40 1 5.7701 1.4318 2.8098 41 1 8.1433 0.9613 3.2549 42 1 9.8829 2.4814 2.4200 43 1 11.8988 2.6468 0.5323 44 1 6.8251 4.9784 0.6937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:58 Heat of formation + Delta-G solvation = -143.709808 kcal Electronic energy + Delta-G solvation = -26860.058906 eV Core-core repulsion = 23095.603656 eV Total energy + Delta-G solvation = -3764.455250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.46663 -38.81244 -38.38733 -37.01908 -36.85224 -35.67468 -35.01087 -31.92999 -31.60609 -30.94531 -28.52532 -27.34494 -24.48909 -23.77529 -23.15442 -22.80398 -21.91142 -20.21928 -19.42569 -18.78652 -17.89770 -17.78644 -17.36476 -16.95716 -16.51694 -16.16508 -16.11091 -15.47041 -15.22467 -15.03733 -14.76662 -14.39618 -14.31949 -14.16918 -13.75395 -13.66271 -13.37027 -13.31146 -13.09931 -13.08064 -13.04603 -12.97939 -12.80315 -12.61740 -12.32399 -12.22376 -12.18014 -11.94091 -11.79839 -11.55762 -11.38932 -11.29299 -11.15686 -10.84598 -10.01362 -9.77129 -9.56406 -8.73655 -6.45474 -0.53468 0.40364 0.83445 1.37352 1.45543 1.50228 2.03445 2.16842 2.55887 2.74804 3.34062 3.45501 3.50646 3.76172 4.04651 4.14281 4.24556 4.29167 4.30633 4.41058 4.44543 4.52194 4.61778 4.80174 4.82065 4.82224 4.89129 4.92075 4.93800 5.04306 5.05757 5.16683 5.19805 5.20692 5.34266 5.40123 5.47789 5.52749 5.55903 5.71177 5.88228 5.93092 6.08962 6.52027 6.79426 6.84241 6.88397 8.23949 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.003755 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.106488 B = 7454.461537 C = 7730.358136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.124 3.876 5 N -0.983 5.983 6 C 0.113 3.887 7 C 0.050 3.950 8 O -0.576 6.576 9 S 2.703 3.297 10 O -0.983 6.983 11 O -0.991 6.991 12 C -0.637 4.637 13 C -0.150 4.150 14 C -0.122 4.122 15 C -0.141 4.141 16 C 0.066 3.934 17 C -0.496 4.496 18 H 0.079 0.921 19 C 0.041 3.959 20 N -0.819 5.819 21 Si 0.980 3.020 22 H -0.264 1.264 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.140 4.140 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.389 0.611 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 -4.419 -6.849 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.176 4.176 4 C -0.001 4.001 5 N -0.821 5.821 6 C -0.011 4.011 7 C -0.030 4.030 8 O -0.383 6.383 9 S 2.797 3.203 10 O -0.974 6.974 11 O -0.981 6.981 12 C -0.726 4.726 13 C -0.170 4.170 14 C -0.141 4.141 15 C -0.161 4.161 16 C 0.063 3.937 17 C -0.525 4.525 18 H 0.097 0.903 19 C -0.175 4.175 20 N -0.445 5.445 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.190 1.190 24 H -0.183 1.183 25 C -0.161 4.161 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.238 0.762 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.131 0.869 43 H 0.102 0.898 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.421 -4.093 -6.151 13.602 hybrid contribution 2.307 0.209 -0.175 2.324 sum -9.113 -3.884 -6.326 11.754 Atomic orbital electron populations 1.21758 0.95014 1.02155 1.01842 1.21453 0.96592 0.95320 1.02580 1.22058 0.94721 0.98457 1.02390 1.21491 0.94317 0.80294 1.03997 1.57235 1.79312 1.24529 1.20977 1.21688 0.97802 0.97055 0.84601 1.22778 0.97650 0.83412 0.99149 1.86344 1.42596 1.25441 1.83888 1.01308 0.73642 0.72490 0.72815 1.93482 1.71179 1.75681 1.57027 1.93469 1.87203 1.31773 1.85680 1.30316 1.23378 1.05582 1.13282 1.20397 0.96451 0.96984 1.03218 1.21115 0.93094 0.99461 1.00465 1.21633 0.98931 0.96905 0.98649 1.18003 0.92231 0.93025 0.90416 1.19840 0.94652 0.97564 1.40405 0.90324 1.26691 1.02132 0.97381 0.91335 1.69815 1.24445 1.16022 1.34168 0.85209 0.76688 0.78815 0.79181 1.18881 1.18954 1.18254 1.20770 0.92953 0.99271 1.03132 0.92197 0.91763 0.93306 0.90748 0.92180 0.93042 0.90468 0.88050 0.91409 0.86692 0.87738 0.90467 0.95272 0.76241 0.85722 0.85782 0.86880 0.89752 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.28 5.93 30.59 0.18 -2.10 16 3 C -0.14 -3.13 5.54 30.59 0.17 -2.96 16 4 C 0.12 3.30 5.18 86.38 0.45 3.75 16 5 N -0.98 -29.81 2.77 -515.79 -1.43 -31.24 16 6 C 0.11 2.92 6.13 86.38 0.53 3.45 16 7 C 0.05 1.33 7.39 71.98 0.53 1.86 16 8 O -0.58 -14.72 11.98 -148.98 -1.78 -16.51 16 9 S 2.70 104.03 5.64 -56.49 -0.32 103.71 16 10 O -0.98 -40.22 16.25 -128.00 -2.08 -42.30 16 11 O -0.99 -41.61 15.82 -128.00 -2.02 -43.63 16 12 C -0.64 -28.22 5.96 22.22 0.13 -28.08 16 13 C -0.15 -6.54 9.53 22.46 0.21 -6.33 16 14 C -0.12 -5.51 10.02 22.22 0.22 -5.29 16 15 C -0.14 -7.16 8.70 22.73 0.20 -6.96 16 16 C 0.07 3.48 5.58 -21.29 -0.12 3.36 16 17 C -0.50 -25.64 9.05 23.46 0.21 -25.43 16 18 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 19 C 0.04 1.93 5.14 85.25 0.44 2.37 16 20 N -0.82 -40.08 10.95 21.82 0.24 -39.84 16 21 Si 0.98 36.33 29.60 68.60 2.03 38.36 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 25 C -0.14 -6.80 8.11 22.73 0.18 -6.61 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.10 2.52 6.60 -2.39 -0.02 2.51 16 34 H 0.07 1.93 7.61 -2.39 -0.02 1.91 16 35 H 0.11 2.29 8.11 -2.39 -0.02 2.27 16 36 H 0.10 2.69 6.91 -2.39 -0.02 2.67 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.03 0.99 6.95 -2.38 -0.02 0.97 16 39 H 0.39 7.79 9.12 -74.06 -0.68 7.12 16 40 H 0.12 4.86 7.61 -2.91 -0.02 4.84 16 41 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.11 5.87 6.15 -2.92 -0.02 5.85 16 43 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16 44 H 0.11 5.14 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -63.92 372.56 -0.98 -64.91 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.33 Total: 37.25 kcal Atomic # 6 Polarization: -74.76 SS G_CDS: 4.06 Total: -70.71 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.19 Total: -71.08 kcal Atomic # 8 Polarization: -96.55 SS G_CDS: -5.89 Total: -102.44 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Atomic # 16 Polarization: 104.03 SS G_CDS: -0.32 Total: 103.71 kcal Total: -63.92 -0.98 -64.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.803 kcal (2) G-P(sol) polarization free energy of solvation -63.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds